Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq6 248 3e-62 seq3 217 5e-53 seq8 176 2e-40 seq2 113 2e-21 >seq6 Length=292091736 Score = 248 bits (274), Expect = 3e-62 Identities = 269/354 (76%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 1428 TAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAA 1487 |||||| |||| || |||||||| || | ||| | || ||||||| ||| ||||||| Sbjct 113562724 TAAATAAACAACTAGGAAAAAGAAACGCAATCCTTCTACAAGGACCAGTAAGCACAGGAA 113562783 Query 1488 AATCTATCATTGCTCA-AGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCA 1546 || | | || | || | | | || ||| ||||||||| |||| || || || Sbjct 113562784 AAATTCTAATAACACACAAAAAAATGTGAATTTGTTGGTAATGTTAGTTGCTACAACCCA 113562843 Query 1547 GCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAA 1606 ||||||||||| |||||||||||||| ||| ||| |||||| | || | ||| |||||| Sbjct 113562844 GCAAATGTAAACTTTCCATTTAATGATTGTTGCAACAAAAATATTATATAGATAGAAGAA 113562903 Query 1607 GCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATT 1666 ||| ||||||| ||||| ||||| || |||||||| |||||| || ||||||| || Sbjct 113562904 GCTTGTAACTTGGGTCAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATC 113562963 Query 1667 AGAATTGATC-AAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGAC 1725 ||| | |||| ||||||| |||||||| || ||| ||||| ||||||||||||||||| Sbjct 113562964 AGATTAGATCAAAAAAGGAAAAGGAAGCAAAGCAATAGAACCTACTCCAGTAATTATGAC 113563023 Query 1726 AACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACA 1779 | ||||| ||||||| ||| |||||||| |||||| ||||| ||||| Sbjct 113563024 CTCAAATGAGGGCATAACAAATGTAAGAATTGGCTGTGAACTCAGACCAGAACA 113563077 Score = 242 bits (268), Expect = 1e-60 Identities = 282/376 (75%), Gaps = 11/376 (3%) Strand=Plus/Plus Query 1442 GGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCT 1501 || |||||||| ||| | || || || || |||||||| |||| ||| | || || Sbjct 48168161 GGAAAAAGAAACACAATACTATTACAAGGGCCAGCAAGCACAGTCAAAAGCCTAATAGCA 48168220 Query 1502 CAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTT 1561 ||| || | | || ||||| ||| || ||||| |||||||||| |||||| Sbjct 48168221 CAAAAAATGTGA--ATTAGTTGGTAACATTGTATGCTATAACCCAGCAAATGTTAATTTT 48168278 Query 1562 CCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGT 1621 ||||||||||| || || |||||| |||||||||| |||||| || ||||| | Sbjct 48168279 CCATTTAATGATTGCTGTAACAAAAATATAATTTGGAT---AGAAGCAGGAAACTTGGCA 48168335 Query 1622 CAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAA 1681 ||| |||| ||||||||||||||||| || |||||| |||| ||| | |||||||| Sbjct 48168336 CAAGAAGTAAATCAATTTAAAGCAATCATGTCAGGACAATCAATCAGACTAAATCAAAAA 48168395 Query 1682 GGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATA 1741 || |||||||| || ||| ||||||||||||||||| |||||| | |||||| ||||| Sbjct 48168396 GGAAAAGGAAGCAAATCAATCGAACCAACTCCAGTAATAATGACATCCAATGAAGATATA 48168455 Query 1742 ACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAAC----CAATAAGAGA 1797 ||||| || ||||| ||||||||| | ||||||||| ||| ||| |||| | | | Sbjct 48168456 ACAATAGTAAGAATAGGATGTGAAATTAAACCTGAACACACAGAACAGAACAATTAAACA 48168515 Query 1798 CAGAATGT-TGAACAT 1812 ||| |||| | ||||| Sbjct 48168516 CAG-ATGTATCAACAT 48168530 Score = 86.0 bits (94), Expect = 2e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 2399 CCAGGTTATAAATATCTTGGGCCTGGGAACAGTCTTGACCAAGGAGAACCAACTAACCCT 2458 || || || ||||||||||| | || |||||||||||||||||||||||||| ||||| Sbjct 48169087 CCTGGATACAAATATCTTGGACTGGGTAACAGTCTTGACCAAGGAGAACCAACAAACCCA 48169146 Query 2459 TCTGACGCCGCTGCAAAAGAACACGACGAA 2488 ||| ||||| ||||||||||| ||| Sbjct 48169147 AATGATAAAGCTGCCAAAGAACACGATGAA 48169176 >seq3 Length=527952102 Score = 217 bits (240), Expect = 5e-53 Identities = 265/358 (74%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 1427 TTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGA 1486 |||||| |||| |||||||||||| || | || | || ||| |||| || |||||| Sbjct 352566196 TTAAATGAACAATTAGGTAAAAGAAATGCAATACTACTACAAGGATCAGCTAGCACAGGA 352566137 Query 1487 AAATCTATCATTGCTCA-AGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGC 1545 ||| | | || || || | | | || |||||| |||||||||| | | | Sbjct 352566136 AAAAGTCTAATAGCACACAAAAAAATGTGAATTAGTGGGTTATGTTGGTTGCGACATCCC 352566077 Query 1546 AGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGA 1605 | ||||||||| |||||||||||||||| | || ||||||| |||| ||||| ||||| Sbjct 352566076 AACAAATGTAAGCTTTCCATTTAATGACTATTGCAGTAAAAATATAATATGGATAGAAGA 352566017 Query 1606 AGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAA-CA- 1663 ||| || ||| | || ||| |||| ||| |||||||| ||| | |||||||||| || Sbjct 352566016 AGCAGGAAACCTAGGCCAAGAAGTAAATAAATTTAAAACAACTATGTCTGGACAAAGCAT 352565957 Query 1664 -ATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTAT 1722 |||||| | || ||||||| ||||||||||| || || |||||||||| | || Sbjct 352565956 TATTAGACTAGACCAAAAAGTAAAAGGAAGTAAATCTATAAAATCAACTCCAGTTGTAAT 352565897 Query 1723 GACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACAT 1780 |||| | |||||| |||| |||| ||| | |||||| | |||| |||||| |||||| Sbjct 352565896 GACATCAAATGAAGATATTACAAATGTCACAATTGGTTATGAATTAAGACCAGAACAT 352565839 >seq8 Length=312544902 Score = 176 bits (194), Expect = 2e-40 Identities = 267/376 (71%), Gaps = 7/376 (2%) Strand=Plus/Plus Query 1427 TTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGA 1486 ||||| | |||| |||| |||||||| ||| | | || | |||||| | || |||||| Sbjct 230387620 TTAAACAAACAATGTGGAAAAAGAAACACAATCTTATTGTAAGGACCAACTAGCACAGGA 230387679 Query 1487 AAATCTATCATTGCTCAAGCCATAGCACAAGCTG-TGGGTAATGTTGGTTGTTATAATGC 1545 ||| | || || | ||| |||| || | ||||| ||| || || ||| | Sbjct 230387680 AAAGGCTTAATAGCATAGAATATATT-CAAGTTGGTTGGTAACACTGGCTGCTACAATCC 230387738 Query 1546 AGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGA 1605 |||||||||||| ||||| ||||||||| | || ||||| |||| ||||| ||||| Sbjct 230387739 AGCAAATGTAAACTTTCCTTTTAATGACAGATGCAGGAAAAACATAATATGGATAGAAGA 230387798 Query 1606 AGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAAT 1665 |||||| | | |||||||| || |||| |||||||| || ||||||||| | Sbjct 230387799 ----GGTAACCTATGACAACAAGTAAACTAATTCAAAGCAATAATGTCAGGACAAACA-T 230387853 Query 1666 TAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGAC 1725 |||| | || |||||||| || |||||||| ||| |||| |||| ||||| |||| Sbjct 230387854 TAGACTAGACCAAAAAGGAAATGGAAGTAAAAGTATTTAACCTCCTCCTGTAATAATGAT 230387913 Query 1726 AACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACA 1785 | |||||| | || | || | | |||||||||||| ||||| ||||| | | Sbjct 230387914 CAGCAATGAAGACATTATTATAATTAAAATTGGATGTGACATTAGACCAGAACACAGTGA 230387973 Query 1786 ACCAATAAGAGACAGA 1801 |||||| | | ||||| Sbjct 230387974 ACCAATTAAACACAGA 230387989 >seq2 Length=541556283 Score = 113 bits (124), Expect = 2e-21 Identities = 183/261 (70%), Gaps = 7/261 (3%) Strand=Plus/Minus Query 1541 AATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATT 1600 ||| |||| ||| | ||||| ||| |||||||||||||||| || || | | ||| || Sbjct 341710298 AATCCAGCTAATATGAATTT-CCAATTAATGACTGTACCAACAACAA--CATTATGGGTT 341710242 Query 1601 GAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAA 1660 | || |||| | ||||| ||||| | || ||||| ||| || || | | ||| Sbjct 341710241 AGAAAAACTGGAAGTTTTGGACAACAGGCAAACCAATTCAAACAAACTTTGAGTTGTCAA 341710182 Query 1661 ACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATT 1720 | ||| || | |||||||||| | ||| | || ||||||| | ||| ||||||||| Sbjct 341710181 AAAATAAGGACTGATCAAAAAAGAAAATG----AAACAAATTGTATCAAATCCAGTAATA 341710126 Query 1721 ATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACAT 1780 || |||| ||||| || |||| | ||| | || || || ||| | ||||| Sbjct 341710125 ATTACAAGCGATGAAGATTTAACTTAAGGAAGATTAGGTTGCAAATTGAGAACAGAACAC 341710066 Query 1781 ACACAACCAATAAGAGACAGA 1801 || |||||||||| || |||| Sbjct 341710065 ACTCAACCAATAAAAGGCAGA 341710045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16920671638720