Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq6 255 2e-64 seq8 228 3e-56 seq3 206 9e-50 seq2 138 4e-29 >seq6 Length=292091736 Score = 255 bits (282), Expect = 2e-64 Identities = 289/380 (76%), Gaps = 13/380 (3%) Strand=Plus/Plus Query 1455 AGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGAAAAAGTATAATTGC 1514 |||||||||||| ||||| ||||| || ||||||||| |||| ||||| |||| || Sbjct 48168160 AGGAAAAAGAAACACAATACTATTACAAGGGCCAGCAAGCACAGTCAAAAGCCTAATAGC 48168219 Query 1515 TCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTT 1574 ||| | || || ||||||||||| ||| ||||| || |||| ||||| || || Sbjct 48168220 ACAAAAAATGTGAA--TTAGTTGGTAACATTGTATGCTATAACCCAGCAAATGTTAATTT 48168277 Query 1575 TCCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTC 1634 |||||||||||| || || ||||| |||| ||||| ||||||||||||||| | Sbjct 48168278 TCCATTTAATGATTGCTGTAACAAAAATATAATTTGGAT---AGAAGCAGGAAACTTGGC 48168334 Query 1635 TAACCAAGTAAACCAATTCAAAGCCAT-ATGTTCAGGTCAAACAATTAGAATTGACCAAA 1693 | ||||||| ||||| ||||| || ||| ||||| ||| |||| ||| | | |||| Sbjct 48168335 ACAAGAAGTAAATCAATTTAAAGCAATCATG-TCAGGACAATCAATCAGACTAAATCAAA 48168393 Query 1694 AAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACA 1753 |||| |||||||||||| ||| ||||||||||| ||||||||||| | |||||||| | Sbjct 48168394 AAGGAAAAGGAAGCAAATCAATCGAACCAACTCCAGTAATAATGACATCCAATGAAGATA 48168453 Query 1754 TAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGAACATACACAAC----CAATAAGA 1809 |||| | ||| ||||||||||| || | ||| ||||| ||| ||| |||| | | Sbjct 48168454 TAACAATAGTAAGAATAGGATGTGAAATTAAACCTGAACACACAGAACAGAACAATTAAA 48168513 Query 1810 GACAGAATGT-TAAACATAA 1828 |||| |||| | ||||||| Sbjct 48168514 CACAG-ATGTATCAACATAA 48168532 Score = 237 bits (262), Expect = 5e-59 Identities = 276/365 (76%), Gaps = 8/365 (2%) Strand=Plus/Plus Query 1435 TGTGTAC--TAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCAT 1492 ||||||| |||| | |||| |||||||||||| |||| || | || || |||| | Sbjct 113562715 TGTGTACACTAAATAAACAACTAGGAAAAAGAAACGCAATCCTTCTACAAGGACCAGTAA 113562774 Query 1493 CAACAGGAAAAAGTATAATTGCTCA--ACACATTGCAAACTTAGTTGGTAATGTTGGTTG 1550 |||||||||| | |||| | || | | | || || || |||||||||||| |||| Sbjct 113562775 GCACAGGAAAAATTCTAATAACACACAAAAAAATGTGAATTT-GTTGGTAATGTTAGTTG 113562833 Query 1551 CTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTGTACAAATAAAAACTTAATATG 1610 |||||| |||| ||||| ||||||||||||||||| ||| || ||||| | |||| Sbjct 113562834 CTACAACCCAGCAAATGTAAACTTTCCATTTAATGATTGTTGCAACAAAAATATTATATA 113562893 Query 1611 GATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAGCCA-TATGTTCAG 1669 ||| |||||||| | ||||| | | |||||||||||||| || || | |||| |||| Sbjct 113562894 GATAGAAGAAGCTTGTAACTTGGGTCAGCAAGTAAACCAATTTAAGGCAATTATG-TCAG 113562952 Query 1670 GTCAAACAATTAGAATTGA-CCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCT 1728 | |||| || ||| | || | ||||||| |||||||||||| ||| ||||| ||||| Sbjct 113562953 GACAAAGTATCAGATTAGATCAAAAAAGGAAAAGGAAGCAAAGCAATAGAACCTACTCCA 113563012 Query 1729 GTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCA 1788 ||||| ||||| ||||||| | |||||| || || ||||| || || || |||||| Sbjct 113563013 GTAATTATGACCTCAAATGAGGGCATAACAAATGTAAGAATTGGCTGTGAACTCAGACCA 113563072 Query 1789 GAACA 1793 ||||| Sbjct 113563073 GAACA 113563077 Score = 100 bits (110), Expect = 9e-18 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 2375 TTATATATTACAGGACTAACTCTACCAGGATACAAATACCTTGGTCCAGGAAACTCACTA 2434 || ||| ||| ||| || ||||| ||||||||||| ||||| | || ||| || Sbjct 48169063 TTGTATCTTATAGGCTGGACACTACCTGGATACAAATATCTTGGACTGGGTAACAGTCTT 48169122 Query 2435 GACCAAGGAGAACCAACTAATCCATCAGACGCCGCAGCAAAAGAACACGACGAAGCCTA- 2493 ||||||||||||||||| || ||| || || || ||||||||||| ||| ||| Sbjct 48169123 GACCAAGGAGAACCAACAAACCCAAATGATAAAGCTGCCAAAGAACACGATGAACACTAT 48169182 Query 2494 CGACAAATACATAAAATCTGGAAAAAATCCATACTTCTACTTCTCAGCAGCTGATGAAAA 2553 | | | || | ||||||| | || || ||||||||||| |||||| || Sbjct 48169183 CATCTTCTGCA-ACAATCTGGTTATAACCCTCACTTCTACTTCAACAAAGCTGACACTAA 48169241 Query 2554 ATTCATAAAAGAAACTGAACACGCAAAAGACTACGGAGGTAAAATTGGA 2602 ||| ||| || | || ||| |||| ||||||| |||||| |||||| Sbjct 48169242 ATTTATACAAAACACAGAAAACGCCAAAGACTGGGGAGGTTGGATTGGA 48169290 >seq8 Length=312544902 Score = 228 bits (252), Expect = 3e-56 Identities = 276/374 (74%), Gaps = 5/374 (1%) Strand=Plus/Plus Query 1442 TAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCATCAACAGGAA 1501 |||||| |||| | ||||||||||| ||||| |||| | || ||| | ||||||| Sbjct 230387621 TAAACAAACAATGTGGAAAAAGAAACACAATCTTATTGTAAGGACCAACTAGCACAGGAA 230387680 Query 1502 AAAGTATAATTGCTCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAG 1561 || | |||| || | | || || || |||||||| ||| ||||||||| ||| Sbjct 230387681 AAGGCTTAATAGCATAGAATATATTCAAGTTGGTTGGTAACACTGGCTGCTACAATCCAG 230387740 Query 1562 CCAATGTGAACTTTCCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAAG 1621 | ||||| |||||||| ||||||||| | | |||||| |||||||||| |||| Sbjct 230387741 CAAATGTAAACTTTCCTTTTAATGACAGATGCAGGAAAAACATAATATGGATAGAAG--- 230387797 Query 1622 CAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAGCCATATGTTCAGGTCAAACAATTA 1681 ||| ||| | | | ||||||||| |||||||||| ||| ||||| ||||| |||| Sbjct 230387798 -AGGTAACCTATGACAACAAGTAAACTAATTCAAAGCAATAATGTCAGGACAAAC-ATTA 230387855 Query 1682 GAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGACTA 1741 || | ||||||||||| || ||||| ||| ||| |||| ||||||||||||||| | Sbjct 230387856 GACTAGACCAAAAAGGAAATGGAAGTAAAAGTATTTAACCTCCTCCTGTAATAATGATCA 230387915 Query 1742 CAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGAACATACACAAC 1801 ||||||||||| | || | ||| ||| ||||| || ||||||||||| | ||| Sbjct 230387916 GCAATGAAGACATTATTATAATTAAAATTGGATGTGACATTAGACCAGAACACAGTGAAC 230387975 Query 1802 CAATAAGAGACAGA 1815 |||| | | ||||| Sbjct 230387976 CAATTAAACACAGA 230387989 Score = 96.9 bits (106), Expect = 1e-16 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 2382 TTACAGGACTAACTCTACCAGGATACAAATACCTTGGTCCAGGAAACTCACTAGACCAAG 2441 |||||||| | || || |||||||||||||||| || |||||||||||||| |||||| Sbjct 230394722 TTACAGGATTCACCTTATCAGGATACAAATACCTGGGACCAGGAAACTCACTCAACCAAG 230394781 Query 2442 GAGAACCAACTAATCCATCAGACGCCGCAGCAAAAGAACACGACGAAGCCT-ACGACAAA 2500 | ||||||||||| ||| || | || |||||||| ||| || || | | | Sbjct 230394782 GTGAACCAACTAACCCAAGTGATAAATCTGCCAAAGAACAGGACAAACACTGTCATCTTA 230394841 Query 2501 TACATAAAATCTGGAAAAAATCCATACTTCTACTTCTCAGCAGCTGATGAAAAATTCATA 2560 | || | ||||||| || | || | |||||||||| | |||| ||||| ||| Sbjct 230394842 TTCA-ACAATCTGGTAATGACCCTTTCTTCTACTTCAACAAAACTGACTCTAAATTTATA 230394900 Query 2561 AAAGAAACTGAACACGCAAAAGACTACGGAGG 2592 ||| | | ||| |||| ||| || |||| Sbjct 230394901 TAAGCAGCAGAAGGAGCAACTGACAACAGAGG 230394932 >seq3 Length=527952102 Score = 206 bits (228), Expect = 9e-50 Identities = 294/403 (73%), Gaps = 12/403 (3%) Strand=Plus/Minus Query 1435 TGTGTAC--TAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGCCAGCAT 1492 ||||||| |||| |||| ||| ||||||||| |||| ||| | || || |||| Sbjct 352566204 TGTGTACATTAAATGAACAATTAGGTAAAAGAAATGCAATACTACTACAAGGATCAGCTA 352566145 Query 1493 CAACAGGAAAAAGTATAATTGCTCA--ACACATTGCAAACTTAGTTGGTAATGTTGGTTG 1550 |||||||||||| |||| || || | | | || || ||||| ||| |||||||||| Sbjct 352566144 GCACAGGAAAAAGTCTAATAGCACACAAAAAAATGTGAA-TTAGTGGGTTATGTTGGTTG 352566086 Query 1551 CTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTGTACAAATAAAAACTTAATATG 1610 | ||| || | ||||| | ||||||||||||||||| | | |||||| ||||||| Sbjct 352566085 CGACATCCCAACAAATGTAAGCTTTCCATTTAATGACTATTGCAGTAAAAATATAATATG 352566026 Query 1611 GATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAGCCA-TATGTTCAG 1669 ||| ||||||||||||||| | | ||||||| |||| ||| | | |||| || | Sbjct 352566025 GATAGAAGAAGCAGGAAACCTAGGCCAAGAAGTAAATAAATTTAAAACAACTATG-TCTG 352565967 Query 1670 GTCAAA-CA--ATTAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTC 1726 | |||| || |||||| | |||||||||| |||||||| ||| || || |||||| Sbjct 352565966 GACAAAGCATTATTAGACTAGACCAAAAAGTAAAAGGAAGTAAATCTATAAAATCAACTC 352565907 Query 1727 CTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGAC 1786 | || ||||||| |||||||||| || || || || | ||| || | || ||||| Sbjct 352565906 CAGTTGTAATGACATCAAATGAAGATATTACAAATGTCACAATTGGTTATGAATTAAGAC 352565847 Query 1787 CAGAACATACACAACCAATAAGAGACAGAATGT-TAAACATAA 1828 |||||||| | | | ||| | |||| |||| | ||||||| Sbjct 352565846 CAGAACATTCTGAGCTCCTAAAACACAG-ATGTGTTAACATAA 352565805 >seq2 Length=541556283 Score = 138 bits (152), Expect = 4e-29 Identities = 206/287 (72%), Gaps = 14/287 (5%) Strand=Plus/Minus Query 1531 TTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTGT 1590 || |||||| |||| ||| |||| |||| ||| |||| |||||| ||||||||||| Sbjct 341710319 TTGGTTGGTGATGTA---TGCATCAATCCAGCTAATATGAA-TTTCCAATTAATGACTGT 341710264 Query 1591 ACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAA 1650 || || || ||| | ||||| || | || | |||| || | || | ||||||| Sbjct 341710263 ACCAACAACAAC--ATTATGGGTTAGAAAAACTGGAAGTTTTGGACAACAGGCAAACCAA 341710206 Query 1651 TTCAAAGCCATATGTTCAG--GTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCA 1708 |||||| || | || || |||||| ||| || | ||| |||||| | ||| | | Sbjct 341710205 TTCAAA--CAAACTTTGAGTTGTCAAAAAATAAGGACTGATCAAAAAAGAAAATG----A 341710152 Query 1709 AACAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAA 1768 ||||||||| | ||| ||| |||||||| || | ||||||| ||||| ||| ||| Sbjct 341710151 AACAAATTGTATCAAATCCAGTAATAATTACAAGCGATGAAGATTTAACTTAAGGAAGAT 341710092 Query 1769 TAGGATGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACAGA 1815 |||| ||| | ||| ||||||| || |||||||||| || |||| Sbjct 341710091 TAGGTTGCAAATTGAGAACAGAACACACTCAACCAATAAAAGGCAGA 341710045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16127115177600