Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_020904.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-17 >seq3 Length=527952102 Score = 98.7 bits (108), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 657 TGGATGGCTGCCCTTTGATGACATGTTGAGACTCTGTGATCGGTACCCTCTCAGAGTTGA 716 ||| |||||||| ||||||||| | ||| | ||||| || || ||||| | ||||| Sbjct 262232678 TGGCTGGCTGCCATTTGATGACCTCTTGCATATATGTGACCGCTATCCTCTGTGTGTTGA 262232619 Query 717 GACCAAAGGTGGTACCATGAATTTCTTGGC-ACGTCGGATCTTT--ATTACTTCTAATAG 773 ||| ||||| |||||| ||| |||||||| | | | |||| ||||||||||||| Sbjct 262232618 GACTAAAGGGGGTACCCAGAACTTCTTGGCCAAGACC---CTTTGCATTACTTCTAATAA 262232562 Query 774 ATTGCCTCATGAATGGTATAGTGATGAGATTTCTAACAAGGATGCCCTCTA 824 | || || || ||||| || || || || | || ||||| |||||||| Sbjct 262232561 GCTACCCCAAGACTGGTACAGGGAAGACATCACCAAAAAGGAAGCCCTCTA 262232511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6492453966224