Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq6 264 3e-67 seq8 210 7e-51 seq3 181 3e-42 >seq6 Length=292091736 Score = 264 bits (292), Expect = 3e-67 Identities = 443/625 (71%), Gaps = 23/625 (4%) Strand=Plus/Plus Query 1039 GCCTATGACCTAATCAAAGAACATCCAGG-CAA--ACTTAAACATATaaaaaaaaCCAAA 1095 || ||||| ||||| |||||| ||| ||| | || ||| || |||| |||||| Sbjct 48168023 GCATATGAACTAATTGTAGAACA---AGGACAAGAAATTGGACACTTAGAAAATACCAAA 48168079 Query 1096 GCCTGGAAACTAATCAAAAACAACA-ACATGAATCCACAAAAAGTCTACCATGCAATAAT 1154 | ||| || ||||| |||| | || |||||| ||||| |||||||| || Sbjct 48168080 ATGTTTAAAATATTCAAACACAATGGATAT-AATCCAATCAAAGTAACACATGCAATCAT 48168138 Query 1155 GTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATCTTACTCTGTGGACCTGCAAG 1214 | |||||||| ||||||| | || |||||||| || || || | || || ||||| Sbjct 48168139 GCGCTGCCTTTACAAACACCTAGGAAAAAGAAACACAATACTATTACAAGGGCCAGCAAG 48168198 Query 1215 CACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAACACAGGCTGCTA 1274 ||||| ||||||||| |||| |||||||| || ||||||||||||| | ||||| Sbjct 48168199 CACAGTCAAAAGCCTAATAGCACAAAAAATGTGAA--TTAGTTGGTAACATTGTATGCTA 48168256 Query 1275 CAATCCAAGCAATGCCAACTTCCCATTCAATGACTG-TGTAAACAAAAACCTAATCTGGA 1333 || ||| |||| || || ||||| ||||| || ||||| |||||| |||| |||| Sbjct 48168257 TAACCCAGCAAATGTTAATTTTCCATTTAATGATTGCTGTAA-CAAAAATATAATTTGGA 48168315 Query 1334 TAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCT-TTCAAAGCCATCATGAGTGGC 1392 |||||| |||| ||| | ||||| | ||| || || ||||| |||||| || Sbjct 48168316 TAGAAG---CAGGAAACTT-GGCACAAGAAGTAAATCAATTTAAAGCAATCATGTCAGGA 48168371 Query 1393 CAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGTA 1452 ||| |||||||||| | |||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 48168372 CAATCAATCAGACTAAATCAAAAAGGAAAAGGAAGCAAATCAATCGAACCAACTCCAGTA 48168431 Query 1453 ATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTGGCACAGAACTCAAAACAGAA 1512 || |||||| |||||||||| || || | ||||| | | || ||| | ||| | ||| Sbjct 48168432 ATAATGACATCCAATGAAGATATAACAATAGTAAGAATAGGATGTGAAATTAAACCTGAA 48168491 Query 1513 CACAGACAAC----CAATAATGGATAGATGCTTAAGAATTGAACTCAAAAACAAACTAAG 1568 |||| | ||| |||| | | ||||| | | || ||| | ||| ||| Sbjct 48168492 CACACAGAACAGAACAATTAAACACAGATGTATCAACATAAGACTGACAAATGTCTTAAA 48168551 Query 1569 TGGT-GATCATGGCTTGTTAGAAGATACTGAACTACCAGCTATCTTCAAATACCTAGAAG 1627 |||| ||| ||| || | ||| ||| ||| ||||| ||| |||||| |||||| Sbjct 48168552 TGGTAGAT-TTGGTTTAATTGAAAATAAAGAAATACCAAATATTTTCAAAACACTAGAAA 48168610 Query 1628 GACATGGATTTTATCCAACCATGTG 1652 | ||| | ||||||| ||||| Sbjct 48168611 ACCTTGGCTACCATCCAACAATGTG 48168635 Score = 192 bits (212), Expect = 2e-45 Identities = 274/383 (72%), Gaps = 2/383 (1%) Strand=Plus/Plus Query 1135 AAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATC 1194 ||||| | |||| ||| ||||| || || |||||| | || |||||||| | ||| Sbjct 113562696 AAAGTAGAACATGGAATGATGTGTACACTAAATAAACAACTAGGAAAAAGAAACGCAATC 113562755 Query 1195 TTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCA-AAAAATAGCAAAATT 1253 | || ||||| | |||||||||||||| ||| || | || ||||| | |||| Sbjct 113562756 CTTCTACAAGGACCAGTAAGCACAGGAAAAATTCTAATAACACACAAAAAAATGTGAATT 113562815 Query 1254 AGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGT 1313 |||||||| | |||||||| ||| |||| ||||| ||||| ||||| ||| Sbjct 113562816 TGTTGGTAATGTTAGTTGCTACAACCCAGCAAATGTAAACTTTCCATTTAATGATTGTTG 113562875 Query 1314 AAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTT 1373 |||||||| | || | |||||||||||| | ||| | || ||||| ||| || Sbjct 113562876 CAACAAAAATATTATATAGATAGAAGAAGCTTGTAACTTGGGTCAGCAAGTAAACCAATT 113562935 Query 1374 CAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAA-GGCAAAGGCAGCAAAT 1432 || || || ||| || ||| |||||| | || |||||| || ||||| |||||| Sbjct 113562936 TAAGGCAATTATGTCAGGACAAAGTATCAGATTAGATCAAAAAAGGAAAAGGAAGCAAAG 113562995 Query 1433 CAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTG 1492 |||| ||||| ||||||||||| ||||| | ||||| | ||| || || |||| | ||| Sbjct 113562996 CAATAGAACCTACTCCAGTAATTATGACCTCAAATGAGGGCATAACAAATGTAAGAATTG 113563055 Query 1493 GCACAGAACTCAAAACAGAACAC 1515 || ||||||| | |||||||| Sbjct 113563056 GCTGTGAACTCAGACCAGAACAC 113563078 >seq8 Length=312544902 Score = 210 bits (232), Expect = 7e-51 Identities = 288/401 (72%), Gaps = 5/401 (1%) Strand=Plus/Plus Query 1126 AATCCACAAAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGA 1185 |||||| ||||| ||||| | |||| |||| | ||||||||| || |||||| Sbjct 230387584 AATCCAATCAAAGTAACACATGCTGTCATGTACTGCTTAAACAAACAATGTGGAAAAAGA 230387643 Query 1186 AATACCATCTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATA 1245 || || |||||| | | ||||| | |||||||||||| || || |||| | || ||| Sbjct 230387644 AACACAATCTTATTGTAAGGACCAACTAGCACAGGAAAAGGCTTAATAGCATAGAATATA 230387703 Query 1246 GCAAAATTAGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAAT 1305 || || ||||||||||| ||||||||||||||| |||| ||||| || || ||| Sbjct 230387704 TTCAAGTTGGTTGGTAACACTGGCTGCTACAATCCAGCAAATGTAAACTTTCCTTTTAAT 230387763 Query 1306 GACTGTGTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTT 1365 ||| | | |||||| |||| |||||||||| ||| |||||| | ||||| Sbjct 230387764 GACAGATGCAGGAAAAACATAATATGGATAGAAG----AGGTAACCTATGACAACAAGTA 230387819 Query 1366 AACTCTTTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGC 1425 |||| |||||||| || ||| || ||| | || ||||| ||||||||||| || || Sbjct 230387820 AACTAATTCAAAGCAATAATGTCAGGACAAAC-ATTAGACTAGACCAAAAAGGAAATGGA 230387878 Query 1426 AGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCAAAGTA 1485 || ||| ||| |||| |||| ||||| |||| | |||||||||||| | | | | Sbjct 230387879 AGTAAAAGTATTTAACCTCCTCCTGTAATAATGATCAGCAATGAAGACATTATTATAATT 230387938 Query 1486 ATAGTTGGCACAGAACTCAAAACAGAACACAGACAACCAAT 1526 | | |||| || | | | |||||||||| ||||||| Sbjct 230387939 AAAATTGGATGTGACATTAGACCAGAACACAGTGAACCAAT 230387979 >seq3 Length=527952102 Score = 181 bits (200), Expect = 3e-42 Identities = 290/408 (71%), Gaps = 9/408 (2%) Strand=Plus/Minus Query 1113 AAACAACAACATGAATCCACAAAAAGTCTACC-ATGCAATAATGTGCTGCCTTAACA-AA 1170 ||||||| ||| | || ||||||| || ||||||| ||||| | | |||| || Sbjct 352566244 AAACAACTACA--ACCCCCCAAAAAGGTAACATATGCAATGATGTG-TACATTAAATGAA 352566188 Query 1171 CAAATGGGCAAAAGAAATACCATCTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTA 1230 ||| | || ||||||||| | || |||| ||| | || |||||||||||||| ||| Sbjct 352566187 CAATTAGGTAAAAGAAATGCAATACTACTACAAGGATCAGCTAGCACAGGAAAAAGTCTA 352566128 Query 1231 CTAGCTCA-AAAAATAGCAAAATTAGTTGGTAACACAGGCTGCTACAATCCAAGCAATGC 1289 |||| || ||||| | ||||||| ||| | || ||| ||| |||| |||| Sbjct 352566127 ATAGCACACAAAAAAATGTGAATTAGTGGGTTATGTTGGTTGCGACATCCCAACAAATGT 352566068 Query 1290 CAACTTCCCATTCAATGACTGTGTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAA 1349 | ||| ||||| ||||||| | | ||||| |||| ||||||||||||||||| || Sbjct 352566067 AAGCTTTCCATTTAATGACTATTGCAGTAAAAATATAATATGGATAGAAGAAGCAGGAAA 352566008 Query 1350 CCTAGGCACTCAAGTTAACTCTTTCAAAGCCATCATGAGTGG-CCAAGCA--ATCAGACT 1406 ||||||| |||| || || ||| | | ||| ||| | ||||| || ||||| Sbjct 352566007 CCTAGGCCAAGAAGTAAATAAATTTAAAACAACTATGTCTGGACAAAGCATTATTAGACT 352565948 Query 1407 TGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAA 1466 |||||||||| ||||| || ||||| || || |||||||||| | |||||| | || Sbjct 352565947 AGACCAAAAAGTAAAAGGAAGTAAATCTATAAAATCAACTCCAGTTGTAATGACATCAAA 352565888 Query 1467 TGAAGACATCACCAAAGTAATAGTTGGCACAGAACTCAAAACAGAACA 1514 |||||| || || || || | | |||| ||| | | | ||||||| Sbjct 352565887 TGAAGATATTACAAATGTCACAATTGGTTATGAATTAAGACCAGAACA 352565840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15032775219120