Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq6 336 6e-89 seq3 246 9e-62 seq8 237 5e-59 >seq6 Length=292091736 Score = 336 bits (372), Expect = 6e-89 Identities = 394/526 (75%), Gaps = 11/526 (2%) Strand=Plus/Plus Query 1191 AACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGA 1250 || ||| ||||||| |||||||| ||| |||| || ||||||| | || |||||| Sbjct 48168110 AATCCAATCAAAGTAACACATGCAATCATGCGCTGCCTTTACAAACACCTAGGAAAAAGA 48168169 Query 1251 AACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATT 1310 |||||||| || | || |||||||| || | ||||||||||||||||||||||| Sbjct 48168170 AACACAATACTATTACAAGGGCCAGCAAGCACAGTCAAAAGCCTAATAGCACAAAAAATG 48168229 Query 1311 GCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAAC 1370 | |||| |||||||| | | |||||| || ||| |||||||| |||||||| || Sbjct 48168230 --TGAATTAGTTGGTAACATTGTATGCTATAACCCAGCAAATGTTAATTTTCCATTTAAT 48168287 Query 1371 GATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTA 1430 ||||| | |||||||| |||| ||||||||| ||||||||||| | | ||||| Sbjct 48168288 GATTGCTGTAACAAAAATATAATTTGGATAGAA---GCAGGAAACTTGGCACAAGAAGTA 48168344 Query 1431 AACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGT 1490 || |||||||||||||||||| || ||| |||| |||||| | |||||||| ||||| Sbjct 48168345 AATCAATTTAAAGCAATCATGTCAGGACAATCAATCAGACTAAATCAAAAAGGAAAAGGA 48168404 Query 1491 AGCAAAACCATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTT 1550 |||||| | ||||||||||||||||| ||||||||| | |||||||| ||||||| ||| Sbjct 48168405 AGCAAATCAATCGAACCAACTCCAGTAATAATGACATCCAATGAAGATATAACAATAGTA 48168464 Query 1551 GTGGTAGGGTCTGAACTTAGACCAGAACATA---AACA-ACCAATCATGGACAGATGTAT 1606 |||| | |||| ||| ||| ||||| | |||| | |||| | |||||||||| Sbjct 48168465 AGAATAGGATGTGAAATTAAACCTGAACACACAGAACAGAACAATTAAACACAGATGTAT 48168524 Query 1607 TCGTGTACATCTGACCACAAGACTT-CCTGGCGACTTTGGTTTACTTGATGATGAAGAGA 1665 || |||| || | | ||| ||| ||||||||| |||| || |||| | Sbjct 48168525 CAACATAAGACTGA-CAAATGTCTTAAATGGTAGATTTGGTTTAATTGAAAATAAAGAAA 48168583 Query 1666 TACCAACTATTTTTAAAAAATTAGACAAACGAGGCTTCAAACCAAC 1711 |||||| |||||| |||| | |||| || | |||| | | ||||| Sbjct 48168584 TACCAAATATTTTCAAAACACTAGAAAACCTTGGCTACCATCCAAC 48168629 Score = 282 bits (312), Expect = 1e-72 Identities = 308/405 (76%), Gaps = 7/405 (2%) Strand=Plus/Plus Query 1178 AAATAATTCCATGAACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACA 1237 |||||||| || ||||| ||||||| |||| ||||||||| ||||| ||||| Sbjct 113562677 AAATAATTACA---ACCCAATCAAAGTAGAACATGGAATGATGTGTACACTAAATAAACA 113562733 Query 1238 AATGGGCAAAAGAAACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAAT 1297 | | || ||||||||| ||||| | || || |||| ||| || ||||||| ||||| Sbjct 113562734 ACTAGGAAAAAGAAACGCAATCCTTCTACAAGGACCAGTAAGCACAGGAAAAATTCTAAT 113562793 Query 1298 AGCACA--AAAAATTGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTT 1355 | |||| ||||| || | |||| ||||||||||| | |||||||| ||| ||||| Sbjct 113562794 AACACACAAAAAAATG-TGAATTTGTTGGTAATGTTAGTTGCTACAACCCAGCAAATGTA 113562852 Query 1356 AACTTTCCATTCAACGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAAC 1415 ||||||||||| || |||||| |||||||||| | |||| |||||||||||| | ||| Sbjct 113562853 AACTTTCCATTTAATGATTGTTGCAACAAAAATATTATATAGATAGAAGAAGCTTGTAAC 113562912 Query 1416 TTTGGAACTCAAGTAAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGA- 1474 || || ||||||||||||||||| ||||| ||| || ||| || ||| |||| Sbjct 113562913 TTGGGTCAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGATTAGAT 113562972 Query 1475 CCAAAAAGGCAAAGGTAGCAAAACCATCGAACCAACTCCAGTTATAATGACAACAAATGA 1534 | ||||||| ||||| |||||| | || ||||| |||||||| || ||||| ||||||| Sbjct 113562973 CAAAAAAGGAAAAGGAAGCAAAGCAATAGAACCTACTCCAGTAATTATGACCTCAAATGA 113563032 Query 1535 AGACATAACAAGAGTTGTGGTAGGGTCTGAACTTAGACCAGAACA 1579 | |||||||| || | || | |||||| ||||||||||| Sbjct 113563033 GGGCATAACAAATGTAAGAATTGGCTGTGAACTCAGACCAGAACA 113563077 Score = 77.0 bits (84), Expect = 1e-10 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 2391 ACTTCAACAACGCAGATAAGACTTTTATAAAAGACACCAACCAAGCAAAAGACTGGGGAG 2450 |||||||||| || || | | |||||| || |||| | | || ||||||||||||| Sbjct 48169220 ACTTCAACAAAGCTGACACTAAATTTATACAAAACACAGAAAACGCCAAAGACTGGGGAG 48169279 Query 2451 GCTGGCTTGGAAACAAATTCTTTAAAATAAAA 2482 | ||| ||||||||||| ||| ||||||||| Sbjct 48169280 GTTGGATTGGAAACAAAGCCTTCAAAATAAAA 48169311 >seq3 Length=527952102 Score = 246 bits (272), Expect = 9e-62 Identities = 283/376 (75%), Gaps = 6/376 (2%) Strand=Plus/Minus Query 1210 ATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAACACAATCTTACTTTGTG 1269 ||||||||||||| |||| ||||| | || |||||||| |||| |||| | Sbjct 352566213 ATGCAATGATGTGTACATTAAATGAACAATTAGGTAAAAGAAATGCAATACTACTACAAG 352566154 Query 1270 GTCCAGCAAGTACTGGAAAAAGCCTAATAGCACA--AAAAATTGCTCAATTGGTTGGTAA 1327 | |||| || || |||||||| ||||||||||| ||||| || | |||| || ||| | Sbjct 352566153 GATCAGCTAGCACAGGAAAAAGTCTAATAGCACACAAAAAAATG-TGAATTAGTGGGTTA 352566095 Query 1328 TGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGCAACAAAAA 1387 ||| || ||| ||| |||| ||||| | ||||||||| || || | | ||| ||||| Sbjct 352566094 TGTTGGTTGCGACATCCCAACAAATGTAAGCTTTCCATTTAATGACTATTGCAGTAAAAA 352566035 Query 1388 CCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTTAAAGCAAT 1447 |||||||||||||||||||||||||| | || ||||||| |||||||| ||| Sbjct 352566034 TATAATATGGATAGAAGAAGCAGGAAACCTAGGCCAAGAAGTAAATAAATTTAAAACAAC 352565975 Query 1448 CATGAGTGG-CCAAGCA--ATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACCATCGA 1504 ||| ||| | ||||| ||||||||||||||||||| ||||| || ||| | || | Sbjct 352565974 TATGTCTGGACAAAGCATTATTAGACTAGACCAAAAAGTAAAAGGAAGTAAATCTATAAA 352565915 Query 1505 ACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGGTCTGA 1564 | ||||||||||| |||||||| |||||||||| || |||| || | || | ||| Sbjct 352565914 ATCAACTCCAGTTGTAATGACATCAAATGAAGATATTACAAATGTCACAATTGGTTATGA 352565855 Query 1565 ACTTAGACCAGAACAT 1580 | | |||||||||||| Sbjct 352565854 ATTAAGACCAGAACAT 352565839 >seq8 Length=312544902 Score = 237 bits (262), Expect = 5e-59 Identities = 304/415 (73%), Gaps = 7/415 (2%) Strand=Plus/Plus Query 1191 AACCCATACAAAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGA 1250 || ||| ||||||| ||||| | |||| ||| ||||||||||| || |||||| Sbjct 230387584 AATCCAATCAAAGTAACACATGCTGTCATGTACTGCTTAAACAAACAATGTGGAAAAAGA 230387643 Query 1251 AACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATT 1310 |||||||||||| | | || ||| | || || |||||| || |||||||| | || | | Sbjct 230387644 AACACAATCTTATTGTAAGGACCAACTAGCACAGGAAAAGGCTTAATAGCATAGAATA-T 230387702 Query 1311 GCTCAA-TTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAA 1369 |||| ||||||||||| || |||||||||||| ||||| |||||||| || || Sbjct 230387703 ATTCAAGTTGGTTGGTAACACTGGCTGCTACAATCCAGCAAATGTAAACTTTCCTTTTAA 230387762 Query 1370 CGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGT 1429 || | ||| |||||| ||||||||||||||| ||| ||| | || ||||| Sbjct 230387763 TGACAGATGCAGGAAAAACATAATATGGATAGAAG----AGGTAACCTATGACAACAAGT 230387818 Query 1430 AAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGG 1489 |||| |||| |||||||| ||| || ||| | |||||||||||||||||||| || || Sbjct 230387819 AAACTAATTCAAAGCAATAATGTCAGGACAAAC-ATTAGACTAGACCAAAAAGGAAATGG 230387877 Query 1490 TAGCAAAACCATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGT 1549 || |||| || |||| |||| || ||||||| | ||||||||||| | | | | Sbjct 230387878 AAGTAAAAGTATTTAACCTCCTCCTGTAATAATGATCAGCAATGAAGACATTATTATAAT 230387937 Query 1550 TGTGGTAGGGTCTGAACTTAGACCAGAACATAAACAACCAATCATGGACAGATGT 1604 | | || | ||| ||||||||||||| | ||||||| | |||||||| Sbjct 230387938 TAAAATTGGATGTGACATTAGACCAGAACACAGTGAACCAATTAAACACAGATGT 230387992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14648796286320