Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq6 324 4e-85 seq8 235 2e-58 seq3 221 4e-54 seq2 102 2e-18 >seq6 Length=292091736 Score = 324 bits (358), Expect = 4e-85 Identities = 412/553 (75%), Gaps = 17/553 (3%) Strand=Plus/Plus Query 1275 AACATTTTAAAAAATAATA-ATATGAATCCaaaaaaaGTATTTCATGCAATTATGTGCTG 1333 || || || ||| | ||| |||| ||||||| |||||| |||||||| ||| |||| Sbjct 48168086 AAAATATTCAAACACAATGGATAT-AATCCAATCAAAGTAACACATGCAATCATGCGCTG 48168144 Query 1334 TCTAAACAAACAGATGGGAAAAAGAAACACAATTCTACTTTGTGGTCCAGCAAGTACAGG 1393 || ||||||| | ||||||||||||||||| ||| | || |||||||| |||| Sbjct 48168145 CCTTTACAAACACCTAGGAAAAAGAAACACAATACTATTACAAGGGCCAGCAAGCACAGT 48168204 Query 1394 AAAAAGCTTACTAGCACAAAAAATAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGC 1453 |||||| || ||||||||||||| | | |||||||| || | | ||||| ||| | Sbjct 48168205 CAAAAGCCTAATAGCACAAAAAATG--TGAATTAGTTGGTAACATTGTATGCTATAACCC 48168262 Query 1454 TAGCAA-TGTAAACTTTCCATTCAATGATTGTAGCAACAAAAACCTAATATGGATAGAAG 1512 ||||| ||| || |||||||| |||||||| | |||||||| |||| ||||||||| Sbjct 48168263 -AGCAAATGTTAATTTTCCATTTAATGATTGCTGTAACAAAAATATAATTTGGATAGAA- 48168320 Query 1513 AAGCAGGAAACTTTGGAACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAA 1572 ||||||||||| | | ||||||| ||||| |||||||||||| || ||||||| Sbjct 48168321 --GCAGGAAACTTGGCACAAGAAGTAAATCAATTTAAAGCAATCATGTCAGGACAATCAA 48168378 Query 1573 TCAGACTAGACCAAAAAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGA 1632 |||||||| | |||||||| ||||| |||||| | || ||||||||||||||||| |||| Sbjct 48168379 TCAGACTAAATCAAAAAGGAAAAGGAAGCAAATCAATCGAACCAACTCCAGTAATAATGA 48168438 Query 1633 CCACAAATGAAGACATTACTAAGGTCGTGGTAGGGTCAGAACTTAGACCTGAACACA--- 1689 | | |||||||| || || | || |||| | ||| ||| ||||||||||| Sbjct 48168439 CATCCAATGAAGATATAACAATAGTAAGAATAGGATGTGAAATTAAACCTGAACACACAG 48168498 Query 1690 AACA-ACCAATCATGGACAGATGTATACAAATACGCTTAACCACAAGACTT-CCTGG-AG 1746 |||| | |||| | |||||||||| | ||| | | | || | | ||| ||| || Sbjct 48168499 AACAGAACAATTAAACACAGATGTATCAACATAAGACTGA-CAAATGTCTTAAATGGTAG 48168557 Query 1747 ACTTTGGTTTACTTAATAATGGAGAAATTCCAAGCATCTTCAGAAGACTAGAAAGAAAAG 1806 | ||||||||| || | ||| |||||| |||| || |||| || |||||||| | Sbjct 48168558 A-TTTGGTTTAATTGAAAATAAAGAAATACCAAATATTTTCAAAACACTAGAAAACCTTG 48168616 Query 1807 GCTACAAACCAAC 1819 ||||| | ||||| Sbjct 48168617 GCTACCATCCAAC 48168629 Score = 279 bits (308), Expect = 2e-71 Identities = 311/409 (76%), Gaps = 6/409 (1%) Strand=Plus/Plus Query 1285 AAAAT--AATAATATGAATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAA 1342 ||||| |||||| || |||| |||||| |||| ||| ||||| ||||| || Sbjct 113562671 AAAATTAAATAATTACAACCCAATCAAAGTAGAACATGGAATGATGTGTACACTAAATAA 113562730 Query 1343 ACAGATGGGAAAAAGAAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTT 1402 ||| | |||||||||||| |||| || || || |||| ||| |||||||||| | Sbjct 113562731 ACAACTAGGAAAAAGAAACGCAATCCTTCTACAAGGACCAGTAAGCACAGGAAAAATTCT 113562790 Query 1403 ACTAGCACA-AAAAATAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGC-AAT 1460 | || |||| ||||| | | | || ||||| ||||| ||||||||||| | ||| ||| Sbjct 113562791 AATAACACACAAAAAAATGTGAATTTGTTGGTAATGTTAGTTGCTACAAC-CCAGCAAAT 113562849 Query 1461 GTAAACTTTCCATTCAATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGA 1520 |||||||||||||| ||||||||| |||||||||| | |||| |||||||||||| | Sbjct 113562850 GTAAACTTTCCATTTAATGATTGTTGCAACAAAAATATTATATAGATAGAAGAAGCTTGT 113562909 Query 1521 AACTTTGGAACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTA 1580 ||||| || |||||||||||||| || ||||| ||| || ||| |||||| || Sbjct 113562910 AACTTGGGTCAGCAAGTAAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGATTA 113562969 Query 1581 GA-CCAAAAAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAA 1639 || | ||||||| ||||| |||||| | |||||||| |||||||||||||||||| |||| Sbjct 113562970 GATCAAAAAAGGAAAAGGAAGCAAAGCAATAGAACCTACTCCAGTAATTATGACCTCAAA 113563029 Query 1640 TGAAGACATTACTAAGGTCGTGGTAGGGTCAGAACTTAGACCTGAACAC 1688 ||| | ||| || || || | || | ||||| ||||| |||||| Sbjct 113563030 TGAGGGCATAACAAATGTAAGAATTGGCTGTGAACTCAGACCAGAACAC 113563078 >seq8 Length=312544902 Score = 235 bits (260), Expect = 2e-58 Identities = 306/416 (74%), Gaps = 9/416 (2%) Strand=Plus/Plus Query 1299 AATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATG-GGAAAAAG 1357 ||||||| |||||| ||||| | |||| ||| |||||||||| ||| |||||||| Sbjct 230387584 AATCCAATCAAAGTAACACATGCTGTCATGTACTGCTTAAACAAACA-ATGTGGAAAAAG 230387642 Query 1358 AAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAAT 1417 ||||||||| || | | || ||| | || ||||||||| ||||| ||||| | || || Sbjct 230387643 AAACACAATCTTATTGTAAGGACCAACTAGCACAGGAAAAGGCTTAATAGCATAGAATAT 230387702 Query 1418 AGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGC-AATGTAAACTTTCCATTCA 1476 | |||| ||||| || || |||||||| | ||| |||||||||||||| || | Sbjct 230387703 ATTCAAGTTGGTTGGTAACACTGGCTGCTACAA-TCCAGCAAATGTAAACTTTCCTTTTA 230387761 Query 1477 ATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAG 1536 |||| | ||| |||||| ||||||||||||||| ||| ||| | || |||| Sbjct 230387762 ATGACAGATGCAGGAAAAACATAATATGGATAGAAG----AGGTAACCTATGACAACAAG 230387817 Query 1537 TAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAG 1596 ||||| ||||||||||||| ||| || ||| | || ||||||||||||||||| || | Sbjct 230387818 TAAACTAATTCAAAGCAATAATGTCAGGACAAAC-ATTAGACTAGACCAAAAAGGAAATG 230387876 Query 1597 GCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACTAAGG 1656 | || |||| || |||| |||| ||||| |||| || ||||||||||||| || Sbjct 230387877 GAAGTAAAAGTATTTAACCTCCTCCTGTAATAATGATCAGCAATGAAGACATTATTATAA 230387936 Query 1657 TCGTGGTAGGGTCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAGATGT 1712 | | || | || ||||||| ||||||| ||||||| | |||||||| Sbjct 230387937 TTAAAATTGGATGTGACATTAGACCAGAACACAGTGAACCAATTAAACACAGATGT 230387992 >seq3 Length=527952102 Score = 221 bits (244), Expect = 4e-54 Identities = 285/390 (73%), Gaps = 4/390 (1%) Strand=Plus/Minus Query 1302 CCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACAGATGGGAAAAAGAAAC 1361 || ||||| ||| ||||||| ||||| |||| |||| | || |||||||| Sbjct 352566229 CCCAAAAAGGTAACATATGCAATGATGTGTACATTAAATGAACAATTAGGTAAAAGAAAT 352566170 Query 1362 ACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACA-AAAAATAGC 1420 |||| ||||| || |||| || ||||||||||| || ||||||| ||||| | Sbjct 352566169 GCAATACTACTACAAGGATCAGCTAGCACAGGAAAAAGTCTAATAGCACACAAAAAAATG 352566110 Query 1421 TCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAACTTTCCATTCAATGA 1480 | | ||||| || |||| |||||| ||| | | | ||||||| ||||||||| ||||| Sbjct 352566109 TGAATTAGTGGGTTATGTTGGTTGCGACATCCCAACAAATGTAAGCTTTCCATTTAATGA 352566050 Query 1481 TTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAA 1540 | | ||| ||||| |||||||||||||||||||||||||| | || ||||||| Sbjct 352566049 CTATTGCAGTAAAAATATAATATGGATAGAAGAAGCAGGAAACCTAGGCCAAGAAGTAAA 352565990 Query 1541 CCAATTCAAAGCAATCATGAGTGGTC-AATCA--ATCAGACTAGACCAAAAAGGCAAAGG 1597 |||| ||| ||| ||| ||| | || || || |||||||||||||||| ||||| Sbjct 352565989 TAAATTTAAAACAACTATGTCTGGACAAAGCATTATTAGACTAGACCAAAAAGTAAAAGG 352565930 Query 1598 CAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACTAAGGT 1657 || ||| | ||| || |||||||||| | ||||| |||||||||| ||||| || || Sbjct 352565929 AAGTAAATCTATAAAATCAACTCCAGTTGTAATGACATCAAATGAAGATATTACAAATGT 352565870 Query 1658 CGTGGTAGGGTCAGAACTTAGACCTGAACA 1687 | | || | ||| | ||||| ||||| Sbjct 352565869 CACAATTGGTTATGAATTAAGACCAGAACA 352565840 >seq2 Length=541556283 Score = 102 bits (112), Expect = 2e-18 Identities = 219/313 (70%), Gaps = 17/313 (5%) Strand=Plus/Minus Query 1405 TAGCACAAAAAATAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGC-AATGTA 1463 || |||| ||| || |||||| ||||| ||||| ||| ||| | ||| ||| | Sbjct 341710338 TACCACATGAAAAAG-TCAGTTGGTTGGTGATGTA---TGCATCAATCC-AGCTAATATG 341710284 Query 1464 AACTTTCCATTCAATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAAC 1523 || |||||| | ||||| |||| |||||| ||| | || || ||||| || | |||| Sbjct 341710283 AA-TTTCCAATTAATGACTGTACCAACAACAACATTATG-GGTTAGAAAAA-CTGGAAGT 341710227 Query 1524 TTTGGAACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCA-GACTAGA 1582 |||||| || | ||||||||||||| || ||||| ||||| ||| | |||| || Sbjct 341710226 TTTGGACAACAGGCAAACCAATTCAAACAAACTTTGAGTTGTCAAAAAATAAGGACT-GA 341710168 Query 1583 CCAAAAAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGA 1642 |||||| | ||| | | ||| || | | ||| ||||||||| || || | |||| Sbjct 341710167 TCAAAAAAGAAAATGAAACAA----ATTGTATCAAATCCAGTAATAATTACAAGCGATGA 341710112 Query 1643 AGACATTAC-TAAGGTCGTGGTAGGGTCAGAACTTAGACCTGAACACAAACAACCAATCA 1701 ||| | || ||||| | |||| | || | ||| | ||||||| |||||||| | Sbjct 341710111 AGATTTAACTTAAGGAAG-ATTAGGTTGCAAATTGAGAACAGAACACACTCAACCAATAA 341710053 Query 1702 TGGACAGATGTAT 1714 | ||||||||| Sbjct 341710052 AAGGCAGATGTAT 341710040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14715992599560