Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= NC_029797.1
Length=4765
Score E
Sequences producing significant alignments: (Bits) Value
seq6 336 7e-89
seq8 248 3e-62
seq3 221 4e-54
seq2 107 6e-20
>seq6
Length=292091736
Score = 336 bits (372), Expect = 7e-89
Identities = 391/521 (75%), Gaps = 11/521 (2%)
Strand=Plus/Plus
Query 1132 AAACTAATCAAAGACAACA-ACATGAATCCATACAAAGTATTCCATGCAATCATGTGCTG 1190
||| || ||||| |||| | || |||||| ||||||| |||||||||||| ||||
Sbjct 48168086 AAAATATTCAAACACAATGGATAT-AATCCAATCAAAGTAACACATGCAATCATGCGCTG 48168144
Query 1191 TCTCAACAAACAAATGGGCAAAAGAAACACCATTCTACTGTGTGGGCCTGCAAGCACTGG 1250
|| ||||||| | || ||||||||||| || ||| | ||||| |||||||| |
Sbjct 48168145 CCTTTACAAACACCTAGGAAAAAGAAACACAATACTATTACAAGGGCCAGCAAGCACAGT 48168204
Query 1251 CAAAAGCCTAATAGCACAAAAAATATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGC 1310
|||||||||||||||||||||||| || || | |||||||| ||| ||||| || |
Sbjct 48168205 CAAAAGCCTAATAGCACAAAAAATGTG--AATTAGTTGGTAACATTGTATGCTATAACCC 48168262
Query 1311 CTCAAATGTAAACTTTCCTTTCAATGACTGCAGCAACAAAAATATAATCTGGGTAGAAGA 1370
||||||| || ||||| || ||||| ||| | |||||||||||||| ||| ||||||
Sbjct 48168263 AGCAAATGTTAATTTTCCATTTAATGATTGCTGTAACAAAAATATAATTTGGATAGAAGC 48168322
Query 1371 AGCTGGCAACTTTGGAGGCCAAGTAAACCAATTCAAAACAATCATGAGTGGCCAATCAAT 1430
|| | ||||| | | ||||||| ||||| ||| |||||||| || ||||||||
Sbjct 48168323 AG---GAAACTTGGCACAAGAAGTAAATCAATTTAAAGCAATCATGTCAGGACAATCAAT 48168379
Query 1431 CAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAAATCCAACCAACTCCAGTCATAATGAC 1490
|||||| | |||||||||||||| || ||| |||| ||||||||||||| ||||||||
Sbjct 48168380 CAGACTAAATCAAAAAGGAAAAGGAAGCAAATCAATCGAACCAACTCCAGTAATAATGAC 48168439
Query 1491 TACAAATGAAGACATAACCAAAGTAATGATAGGATGTGAACTCAAACCAGAACACA---A 1547
| |||||||| ||||| | ||||| |||||||||||| | ||||| ||||||| |
Sbjct 48168440 ATCCAATGAAGATATAACAATAGTAAGAATAGGATGTGAAATTAAACCTGAACACACAGA 48168499
Query 1548 ACA-ACCTATAATGGACAGATGTGTAAGAATAGAACTCaaaaaaaGACTACAAGGTGACT 1606
||| | | || | |||||||| | | ||| ||| | ||| || | ||| |
Sbjct 48168500 ACAGAACAATTAAACACAGATGTATCAACATAAGACTGACAAATGTCTTAAATGGTAGAT 48168559
Query 1607 TTGGTTTGCTTGAAGATGGTGAAATCCCAGACATATTCAAA 1647
||||||| ||||| || ||||| ||| | || ||||||
Sbjct 48168560 TTGGTTTAATTGAAAATAAAGAAATACCAAATATTTTCAAA 48168600
Score = 279 bits (308), Expect = 2e-71
Identities = 314/418 (75%), Gaps = 2/418 (0%)
Strand=Plus/Plus
Query 1156 AATCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGA 1215
|| ||| ||||||| |||| ||| ||||| || || |||||| | || ||||||
Sbjct 113562687 AACCCAATCAAAGTAGAACATGGAATGATGTGTACACTAAATAAACAACTAGGAAAAAGA 113562746
Query 1216 AACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACA-AAAAAT 1274
||| | || || || || || | |||||| || |||| |||||| |||| |||||
Sbjct 113562747 AACGCAATCCTTCTACAAGGACCAGTAAGCACAGGAAAAATTCTAATAACACACAAAAAA 113562806
Query 1275 ATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAA 1334
||| || | |||||||||||| |||||||||| | |||||||||||||||| || ||
Sbjct 113562807 ATGTGAATTTGTTGGTAATGTTAGTTGCTACAACCCAGCAAATGTAAACTTTCCATTTAA 113562866
Query 1335 TGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGT 1394
||| || ||||||||||||| || | | ||||||||||| | ||||| || |||||
Sbjct 113562867 TGATTGTTGCAACAAAAATATTATATAGATAGAAGAAGCTTGTAACTTGGGTCAGCAAGT 113562926
Query 1395 AAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGA-CCAAAAAGGAAAAG 1453
||||||||| || |||| ||| || ||| |||||| | || | ||||||||||||
Sbjct 113562927 AAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGATTAGATCAAAAAAGGAAAAG 113562986
Query 1454 GCAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAG 1513
| || |||| ||| |||| |||||||| || ||||| ||||||| | |||||| || |
Sbjct 113562987 GAAGCAAAGCAATAGAACCTACTCCAGTAATTATGACCTCAAATGAGGGCATAACAAATG 113563046
Query 1514 TAATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGT 1571
||| || || |||||||||| |||||||||| | |||| | ||||||||||
Sbjct 113563047 TAAGAATTGGCTGTGAACTCAGACCAGAACACTCTGAGTCTATTAAACACAGATGTGT 113563104
>seq8
Length=312544902
Score = 248 bits (274), Expect = 3e-62
Identities = 305/415 (73%), Gaps = 5/415 (1%)
Strand=Plus/Plus
Query 1156 AATCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGA 1215
|||||| ||||||| ||||| |||||| ||| | ||||||||| || ||||||
Sbjct 230387584 AATCCAATCAAAGTAACACATGCTGTCATGTACTGCTTAAACAAACAATGTGGAAAAAGA 230387643
Query 1216 AACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATA 1275
||||| || || ||| || || | ||||| || ||| || |||||||| | || |||
Sbjct 230387644 AACACAATCTTATTGTAAGGACCAACTAGCACAGGAAAAGGCTTAATAGCATAGAATATA 230387703
Query 1276 TGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAAT 1335
| | | |||||||||| ||| ||||||||| | ||||||||||||||||||| |||
Sbjct 230387704 TTCAAGTTGGTTGGTAACACTGGCTGCTACAATCCAGCAAATGTAAACTTTCCTTTTAAT 230387763
Query 1336 GACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTA 1395
||| | ||| ||||| ||||| ||| ||||||| || ||| | || ||||||
Sbjct 230387764 GACAGATGCAGGAAAAACATAATATGGATAGAAGA----GGTAACCTATGACAACAAGTA 230387819
Query 1396 AACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGC 1455
||| |||||||| |||| ||| || ||| | || ||||| |||||||||||||| ||
Sbjct 230387820 AACTAATTCAAAGCAATAATGTCAGGACAAAC-ATTAGACTAGACCAAAAAGGAAATGGA 230387878
Query 1456 AGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTA 1515
|||||| || |||| |||| || ||||||| | ||||||||||| | | | |
Sbjct 230387879 AGTAAAAGTATTTAACCTCCTCCTGTAATAATGATCAGCAATGAAGACATTATTATAATT 230387938
Query 1516 ATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTG 1570
| || |||||||| | | ||||||||||| |||| || | |||||||||
Sbjct 230387939 AAAATTGGATGTGACATTAGACCAGAACACAGTGAACCAATTAAACACAGATGTG 230387993
>seq3
Length=527952102
Score = 221 bits (244), Expect = 4e-54
Identities = 278/377 (74%), Gaps = 10/377 (3%)
Strand=Plus/Minus
Query 1175 ATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATTCTACTGTGTG 1234
||||||| ||||| | || ||||| | || |||||||| | || ||||| |
Sbjct 352566213 ATGCAATGATGTGTACATTAAATGAACAATTAGGTAAAAGAAATGCAATACTACTACAAG 352566154
Query 1235 GGCCTGCAAGCACTGGCAAAAGCCTAATAGCACA-AAAAATATGCCAACTGGTTGGTAAT 1293
| | || ||||| || ||||| ||||||||||| ||||| ||| || | || ||| ||
Sbjct 352566153 GATCAGCTAGCACAGGAAAAAGTCTAATAGCACACAAAAAAATGTGAATTAGTGGGTTAT 352566094
Query 1294 GTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGCAACAAAAAT 1353
||||||||| ||| | ||||||||| |||||| || ||||||| ||| ||||||
Sbjct 352566093 GTTGGTTGCGACATCCCAACAAATGTAAGCTTTCCATTTAATGACTATTGCAGTAAAAAT 352566034
Query 1354 ATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCC---AAGTAAACCAATTCAAAACA 1410
||||| ||| |||||||||| || ||| | ||||| ||||||| |||| ||||||
Sbjct 352566033 ATAATATGGATAGAAGAAGCAGGAAACCT---AGGCCAAGAAGTAAATAAATTTAAAACA 352565977
Query 1411 ATCATGAGTGG-CCAATCA--ATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAAATC 1467
| ||| ||| | || || || ||||| |||||||||| |||||| |||||| ||
Sbjct 352565976 ACTATGTCTGGACAAAGCATTATTAGACTAGACCAAAAAGTAAAAGGAAGTAAATCTATA 352565917
Query 1468 CAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGGATGT 1527
|| |||||||||| ||||||| |||||||||| || || || || | || || | |
Sbjct 352565916 AAATCAACTCCAGTTGTAATGACATCAAATGAAGATATTACAAATGTCACAATTGGTTAT 352565857
Query 1528 GAACTCAAACCAGAACA 1544
||| | | |||||||||
Sbjct 352565856 GAATTAAGACCAGAACA 352565840
>seq2
Length=541556283
Score = 107 bits (118), Expect = 6e-20
Identities = 199/287 (69%), Gaps = 10/287 (3%)
Strand=Plus/Minus
Query 1283 TGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCA 1342
|||||||| |||| ||| |||| | | ||| | || ||||| | |||||||| |
Sbjct 341710318 TGGTTGGTGATGTA---TGCATCAATCCAGCTAATATGAA-TTTCCAATTAATGACTGTA 341710263
Query 1343 GCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAAT 1402
|||||| || || || || ||||| || |||| | |||||| || | ||||||||
Sbjct 341710262 CCAACAACAACATTATG-GGTTAGAAAAA-CTGGAAGTTTTGGACAACAGGCAAACCAAT 341710205
Query 1403 TCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAG 1462
||||| || ||||| | ||| ||| || ||| |||||| ||||| | |||
Sbjct 341710204 TCAAACAAACTTTGAGTTGTCAAAAAATAAGGACTGATCAAAAAAGAAAATG----AAAC 341710149
Query 1463 AAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAG 1522
|||| | ||| |||||| ||||| || | ||||||| |||| ||| || |||
Sbjct 341710148 AAATTGTATCAAATCCAGTAATAATTACAAGCGATGAAGATTTAACTTAAGGAAGATTAG 341710089
Query 1523 GATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGT 1569
| || || | | | ||||||||| ||||| |||| | |||||||
Sbjct 341710088 GTTGCAAATTGAGAACAGAACACACTCAACCAATAAAAGGCAGATGT 341710042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15135169601200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |