Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq6 336 7e-89 seq8 248 3e-62 seq3 221 4e-54 seq2 107 6e-20 >seq6 Length=292091736 Score = 336 bits (372), Expect = 7e-89 Identities = 391/521 (75%), Gaps = 11/521 (2%) Strand=Plus/Plus Query 1132 AAACTAATCAAAGACAACA-ACATGAATCCATACAAAGTATTCCATGCAATCATGTGCTG 1190 ||| || ||||| |||| | || |||||| ||||||| |||||||||||| |||| Sbjct 48168086 AAAATATTCAAACACAATGGATAT-AATCCAATCAAAGTAACACATGCAATCATGCGCTG 48168144 Query 1191 TCTCAACAAACAAATGGGCAAAAGAAACACCATTCTACTGTGTGGGCCTGCAAGCACTGG 1250 || ||||||| | || ||||||||||| || ||| | ||||| |||||||| | Sbjct 48168145 CCTTTACAAACACCTAGGAAAAAGAAACACAATACTATTACAAGGGCCAGCAAGCACAGT 48168204 Query 1251 CAAAAGCCTAATAGCACAAAAAATATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGC 1310 |||||||||||||||||||||||| || || | |||||||| ||| ||||| || | Sbjct 48168205 CAAAAGCCTAATAGCACAAAAAATGTG--AATTAGTTGGTAACATTGTATGCTATAACCC 48168262 Query 1311 CTCAAATGTAAACTTTCCTTTCAATGACTGCAGCAACAAAAATATAATCTGGGTAGAAGA 1370 ||||||| || ||||| || ||||| ||| | |||||||||||||| ||| |||||| Sbjct 48168263 AGCAAATGTTAATTTTCCATTTAATGATTGCTGTAACAAAAATATAATTTGGATAGAAGC 48168322 Query 1371 AGCTGGCAACTTTGGAGGCCAAGTAAACCAATTCAAAACAATCATGAGTGGCCAATCAAT 1430 || | ||||| | | ||||||| ||||| ||| |||||||| || |||||||| Sbjct 48168323 AG---GAAACTTGGCACAAGAAGTAAATCAATTTAAAGCAATCATGTCAGGACAATCAAT 48168379 Query 1431 CAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAAATCCAACCAACTCCAGTCATAATGAC 1490 |||||| | |||||||||||||| || ||| |||| ||||||||||||| |||||||| Sbjct 48168380 CAGACTAAATCAAAAAGGAAAAGGAAGCAAATCAATCGAACCAACTCCAGTAATAATGAC 48168439 Query 1491 TACAAATGAAGACATAACCAAAGTAATGATAGGATGTGAACTCAAACCAGAACACA---A 1547 | |||||||| ||||| | ||||| |||||||||||| | ||||| ||||||| | Sbjct 48168440 ATCCAATGAAGATATAACAATAGTAAGAATAGGATGTGAAATTAAACCTGAACACACAGA 48168499 Query 1548 ACA-ACCTATAATGGACAGATGTGTAAGAATAGAACTCaaaaaaaGACTACAAGGTGACT 1606 ||| | | || | |||||||| | | ||| ||| | ||| || | ||| | Sbjct 48168500 ACAGAACAATTAAACACAGATGTATCAACATAAGACTGACAAATGTCTTAAATGGTAGAT 48168559 Query 1607 TTGGTTTGCTTGAAGATGGTGAAATCCCAGACATATTCAAA 1647 ||||||| ||||| || ||||| ||| | || |||||| Sbjct 48168560 TTGGTTTAATTGAAAATAAAGAAATACCAAATATTTTCAAA 48168600 Score = 279 bits (308), Expect = 2e-71 Identities = 314/418 (75%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 1156 AATCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGA 1215 || ||| ||||||| |||| ||| ||||| || || |||||| | || |||||| Sbjct 113562687 AACCCAATCAAAGTAGAACATGGAATGATGTGTACACTAAATAAACAACTAGGAAAAAGA 113562746 Query 1216 AACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACA-AAAAAT 1274 ||| | || || || || || | |||||| || |||| |||||| |||| ||||| Sbjct 113562747 AACGCAATCCTTCTACAAGGACCAGTAAGCACAGGAAAAATTCTAATAACACACAAAAAA 113562806 Query 1275 ATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAA 1334 ||| || | |||||||||||| |||||||||| | |||||||||||||||| || || Sbjct 113562807 ATGTGAATTTGTTGGTAATGTTAGTTGCTACAACCCAGCAAATGTAAACTTTCCATTTAA 113562866 Query 1335 TGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGT 1394 ||| || ||||||||||||| || | | ||||||||||| | ||||| || ||||| Sbjct 113562867 TGATTGTTGCAACAAAAATATTATATAGATAGAAGAAGCTTGTAACTTGGGTCAGCAAGT 113562926 Query 1395 AAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGA-CCAAAAAGGAAAAG 1453 ||||||||| || |||| ||| || ||| |||||| | || | |||||||||||| Sbjct 113562927 AAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGATTAGATCAAAAAAGGAAAAG 113562986 Query 1454 GCAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAG 1513 | || |||| ||| |||| |||||||| || ||||| ||||||| | |||||| || | Sbjct 113562987 GAAGCAAAGCAATAGAACCTACTCCAGTAATTATGACCTCAAATGAGGGCATAACAAATG 113563046 Query 1514 TAATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGT 1571 ||| || || |||||||||| |||||||||| | |||| | |||||||||| Sbjct 113563047 TAAGAATTGGCTGTGAACTCAGACCAGAACACTCTGAGTCTATTAAACACAGATGTGT 113563104 >seq8 Length=312544902 Score = 248 bits (274), Expect = 3e-62 Identities = 305/415 (73%), Gaps = 5/415 (1%) Strand=Plus/Plus Query 1156 AATCCATACAAAGTATTCCATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGA 1215 |||||| ||||||| ||||| |||||| ||| | ||||||||| || |||||| Sbjct 230387584 AATCCAATCAAAGTAACACATGCTGTCATGTACTGCTTAAACAAACAATGTGGAAAAAGA 230387643 Query 1216 AACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATA 1275 ||||| || || ||| || || | ||||| || ||| || |||||||| | || ||| Sbjct 230387644 AACACAATCTTATTGTAAGGACCAACTAGCACAGGAAAAGGCTTAATAGCATAGAATATA 230387703 Query 1276 TGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAAT 1335 | | | |||||||||| ||| ||||||||| | ||||||||||||||||||| ||| Sbjct 230387704 TTCAAGTTGGTTGGTAACACTGGCTGCTACAATCCAGCAAATGTAAACTTTCCTTTTAAT 230387763 Query 1336 GACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTA 1395 ||| | ||| ||||| ||||| ||| ||||||| || ||| | || |||||| Sbjct 230387764 GACAGATGCAGGAAAAACATAATATGGATAGAAGA----GGTAACCTATGACAACAAGTA 230387819 Query 1396 AACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGC 1455 ||| |||||||| |||| ||| || ||| | || ||||| |||||||||||||| || Sbjct 230387820 AACTAATTCAAAGCAATAATGTCAGGACAAAC-ATTAGACTAGACCAAAAAGGAAATGGA 230387878 Query 1456 AGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTA 1515 |||||| || |||| |||| || ||||||| | ||||||||||| | | | | Sbjct 230387879 AGTAAAAGTATTTAACCTCCTCCTGTAATAATGATCAGCAATGAAGACATTATTATAATT 230387938 Query 1516 ATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTG 1570 | || |||||||| | | ||||||||||| |||| || | ||||||||| Sbjct 230387939 AAAATTGGATGTGACATTAGACCAGAACACAGTGAACCAATTAAACACAGATGTG 230387993 >seq3 Length=527952102 Score = 221 bits (244), Expect = 4e-54 Identities = 278/377 (74%), Gaps = 10/377 (3%) Strand=Plus/Minus Query 1175 ATGCAATCATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCATTCTACTGTGTG 1234 ||||||| ||||| | || ||||| | || |||||||| | || ||||| | Sbjct 352566213 ATGCAATGATGTGTACATTAAATGAACAATTAGGTAAAAGAAATGCAATACTACTACAAG 352566154 Query 1235 GGCCTGCAAGCACTGGCAAAAGCCTAATAGCACA-AAAAATATGCCAACTGGTTGGTAAT 1293 | | || ||||| || ||||| ||||||||||| ||||| ||| || | || ||| || Sbjct 352566153 GATCAGCTAGCACAGGAAAAAGTCTAATAGCACACAAAAAAATGTGAATTAGTGGGTTAT 352566094 Query 1294 GTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGCAACAAAAAT 1353 ||||||||| ||| | ||||||||| |||||| || ||||||| ||| |||||| Sbjct 352566093 GTTGGTTGCGACATCCCAACAAATGTAAGCTTTCCATTTAATGACTATTGCAGTAAAAAT 352566034 Query 1354 ATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCC---AAGTAAACCAATTCAAAACA 1410 ||||| ||| |||||||||| || ||| | ||||| ||||||| |||| |||||| Sbjct 352566033 ATAATATGGATAGAAGAAGCAGGAAACCT---AGGCCAAGAAGTAAATAAATTTAAAACA 352565977 Query 1411 ATCATGAGTGG-CCAATCA--ATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAAATC 1467 | ||| ||| | || || || ||||| |||||||||| |||||| |||||| || Sbjct 352565976 ACTATGTCTGGACAAAGCATTATTAGACTAGACCAAAAAGTAAAAGGAAGTAAATCTATA 352565917 Query 1468 CAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGGATGT 1527 || |||||||||| ||||||| |||||||||| || || || || | || || | | Sbjct 352565916 AAATCAACTCCAGTTGTAATGACATCAAATGAAGATATTACAAATGTCACAATTGGTTAT 352565857 Query 1528 GAACTCAAACCAGAACA 1544 ||| | | ||||||||| Sbjct 352565856 GAATTAAGACCAGAACA 352565840 >seq2 Length=541556283 Score = 107 bits (118), Expect = 6e-20 Identities = 199/287 (69%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 1283 TGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCA 1342 |||||||| |||| ||| |||| | | ||| | || ||||| | |||||||| | Sbjct 341710318 TGGTTGGTGATGTA---TGCATCAATCCAGCTAATATGAA-TTTCCAATTAATGACTGTA 341710263 Query 1343 GCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAAT 1402 |||||| || || || || ||||| || |||| | |||||| || | |||||||| Sbjct 341710262 CCAACAACAACATTATG-GGTTAGAAAAA-CTGGAAGTTTTGGACAACAGGCAAACCAAT 341710205 Query 1403 TCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAG 1462 ||||| || ||||| | ||| ||| || ||| |||||| ||||| | ||| Sbjct 341710204 TCAAACAAACTTTGAGTTGTCAAAAAATAAGGACTGATCAAAAAAGAAAATG----AAAC 341710149 Query 1463 AAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAG 1522 |||| | ||| |||||| ||||| || | ||||||| |||| ||| || ||| Sbjct 341710148 AAATTGTATCAAATCCAGTAATAATTACAAGCGATGAAGATTTAACTTAAGGAAGATTAG 341710089 Query 1523 GATGTGAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGT 1569 | || || | | | ||||||||| ||||| |||| | ||||||| Sbjct 341710088 GTTGCAAATTGAGAACAGAACACACTCAACCAATAAAAGGCAGATGT 341710042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15135169601200