Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq6 325 1e-85 seq3 235 2e-58 seq8 190 6e-45 >seq6 Length=292091736 Score = 325 bits (360), Expect = 1e-85 Identities = 436/598 (73%), Gaps = 15/598 (3%) Strand=Plus/Plus Query 1156 ACAGCATACCAACTAATCATAGAACATGAAGGCCCACAACTAGACAAACCAAGAAAATGC 1215 |||||||| ||||||| ||||||| ||| | | || | | | || ||||||| | Sbjct 48168020 ACAGCATATGAACTAATTGTAGAACA---AGGACAAGAAATTGG-ACACTTAGAAAATAC 48168075 Query 1216 -AAAGCATGGAAACTAATCAAAAACAACAAAATGAATCCATACAAAGTTTACCATGCAAT 1274 ||| | ||| || ||||| |||| | |||||| |||||| |||||||| Sbjct 48168076 CAAAATGTTTAAAATATTCAAACACAATGGATATAATCCAATCAAAGTAACACATGCAAT 48168135 Query 1275 GAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATCCTACTATGTGGACCTGC 1334 | | |||||| ||||||| ||||| ||| |||||||||| ||| || || || || Sbjct 48168136 CATGCGCTGCCTTTACAAACACCTAGGAAAAAGAAACACAATACTATTACAAGGGCCAGC 48168195 Query 1335 AAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAATGTTGGATG 1394 ||| |||| |||||||||| |||||||| |||| || |||||||||| ||| ||| Sbjct 48168196 AAGCACAGTCAAAAGCCTAATAGCACAAAAAATGTGAAT--TAGTTGGTAACATTGTATG 48168253 Query 1395 CTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAACCTAATCTG 1454 |||||| |||||||| || |||||||| ||||| || | |||||||| |||| || Sbjct 48168254 CTATAACCCAGCAAATGTTAATTTTCCATTTAATGATTGCTGTAACAAAAATATAATTTG 48168313 Query 1455 GGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCAATTATGAGTGG 1514 | |||||| || | ||||| | | ||||||| |||||||||||||| ||| || Sbjct 48168314 GATAGAAGCAG---GAAACTTGGCACAAGAAGTAAATCAATTTAAAGCAATCATGTCAGG 48168370 Query 1515 CCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGT 1574 || ||||||||||| | |||||||| ||||| ||||||||||| |||||||||||||| Sbjct 48168371 ACAATCAATCAGACTAAATCAAAAAGGAAAAGGAAGCAAATCAATCGAACCAACTCCAGT 48168430 Query 1575 CATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAACTAAAACCAGA 1634 || ||||| | ||||||||||| |||| ||| | | || | |||| | ||||| || Sbjct 48168431 AATAATGACATCCAATGAAGATATAACAATAGTAAGAATAGGATGTGAAATTAAACCTGA 48168490 Query 1635 ACACA---AACA-ACCTATCATGGACAGATGTGTCAGAATCTATCTAAACAATAGACTAA 1690 ||||| |||| | | || | |||||||| ||| || || | ||| ||| Sbjct 48168491 ACACACAGAACAGAACAATTAAACACAGATGTATCAACATAAGACTGACAAATGTCTTAA 48168550 Query 1691 ATGGTGACTTTGGTTTGCTTGAACACAATGAAATTCCAAGCATATTC-AAACACTTGA 1747 ||||| |||||||| ||||| | || ||||| |||| || ||| ||||||| || Sbjct 48168551 ATGGTAGATTTGGTTTAATTGAAAATAAAGAAATACCAAATATTTTCAAAACACTAGA 48168608 Score = 279 bits (308), Expect = 2e-71 Identities = 314/418 (75%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 1249 AATCCATACAAAGTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGA 1308 || ||| |||||| | |||| ||||| ||| || || ||||||||||| ||| || Sbjct 113562687 AACCCAATCAAAGTAGAACATGGAATGATGTGTACACTAAATAAACAACTAGGAAAAAGA 113562746 Query 1309 AACACAATCCTACTATGTGGACCTGCAAGTACAGGCAAAAGCCTACTAGCACA-AGAAAT 1367 ||| ||||||| ||| ||||| | ||| ||||| |||| ||| || |||| | ||| Sbjct 113562747 AACGCAATCCTTCTACAAGGACCAGTAAGCACAGGAAAAATTCTAATAACACACAAAAAA 113562806 Query 1368 AGCAAAACTAGTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAA 1427 | || | |||||||||||| | ||||| || |||||||| |||||||||||| || Sbjct 113562807 ATGTGAATTTGTTGGTAATGTTAGTTGCTACAACCCAGCAAATGTAAACTTTCCATTTAA 113562866 Query 1428 TGACTGTAGCAACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGT 1487 ||| ||| |||||||||| | || | | ||||||||||| ||||||| ||| ||||| Sbjct 113562867 TGATTGTTGCAACAAAAATATTATATAGATAGAAGAAGCTTGTAACTTGGGTCAGCAAGT 113562926 Query 1488 AAACCAATTTAAAGCAATTATGAGTGGCCAGGCAATCAGACTAGA-CCAAAAAGGCAAAG 1546 |||||||||||| ||||||||| || || |||||| |||| | ||||||| |||| Sbjct 113562927 AAACCAATTTAAGGCAATTATGTCAGGACAAAGTATCAGATTAGATCAAAAAAGGAAAAG 113562986 Query 1547 GCAGCAAATCAATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAG 1606 | |||||| |||| ||||| |||||||| |||||||| | ||||| | || |||| | Sbjct 113562987 GAAGCAAAGCAATAGAACCTACTCCAGTAATTATGACCTCAAATGAGGGCATAACAAATG 113563046 Query 1607 TCATGGTTGGTTCTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGATGTGT 1664 | | |||| | |||||| | |||||||||| | |||| | |||||||||| Sbjct 113563047 TAAGAATTGGCTGTGAACTCAGACCAGAACACTCTGAGTCTATTAAACACAGATGTGT 113563104 Score = 98.7 bits (108), Expect = 3e-17 Identities = 172/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 2501 TATAGGTTGGACTCTACCTGGATACAACTATCTAGGACCGGGTAACAACAACTTTAAGAA 2560 |||||| ||||| |||||||||||||| ||||| |||| |||||||| ||| | || Sbjct 48169071 TATAGGCTGGACACTACCTGGATACAAATATCTTGGACTGGGTAACA--GTCTTGACCAA 48169128 Query 2561 G--AAACCTACAAATCCATCTGACAAAGCCGCACGCAAACACGATTTAGAATACAGCAAA 2618 | |||| ||||| ||| ||| ||||| || |||||||| ||| || | Sbjct 48169129 GGAGAACCAACAAACCCAAATGATAAAGCTGCCAAAGAACACGAT---GAACACTATCAT 48169185 Query 2619 CTTATCCAACAA---GGACACAATCCATACATCTACTTCAACCAAGCCGACGACGACTTC 2675 ||| | |||||| || | || || || ||||||||||| |||| ||| | || Sbjct 48169186 CTTCTGCAACAATCTGGTTATAACCCTCACTTCTACTTCAACAAAGCTGACACTAAATTT 48169245 Query 2676 ATCAAAAACACTGACCAAGCACCAGACTGGGGTGGTAAGTTCGGTAACTTTGCCTTCAGA 2735 || ||||||| || | || ||||||||| ||| | | || ||| ||||||| | Sbjct 48169246 ATACAAAACACAGAAAACGCCAAAGACTGGGGAGGTTGGATTGGAAACAAAGCCTTCAAA 48169305 Query 2736 CTAAAAA 2742 |||||| Sbjct 48169306 ATAAAAA 48169312 >seq3 Length=527952102 Score = 235 bits (260), Expect = 2e-58 Identities = 343/479 (72%), Gaps = 8/479 (2%) Strand=Plus/Minus Query 1268 ATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATCCTACTATGTG 1327 ||||||||| ||| | || ||||| |||| ||| |||| |||| |||||| | Sbjct 352566213 ATGCAATGATGTGTACATTAAATGAACAATTAGGTAAAAGAAATGCAATACTACTACAAG 352566154 Query 1328 GACCTGCAAGTACAGGCAAAAGCCTACTAGCACA-AGAAATAGCAAAACTAGTTGGTAAT 1386 || | || || ||||| ||||| ||| ||||||| | ||| | || |||| ||| || Sbjct 352566153 GATCAGCTAGCACAGGAAAAAGTCTAATAGCACACAAAAAAATGTGAATTAGTGGGTTAT 352566094 Query 1387 GTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAAC 1446 ||||| ||| | | || ||||| || ||||||||| ||||||| | ||| ||||| Sbjct 352566093 GTTGGTTGCGACATCCCAACAAATGTAAGCTTTCCATTTAATGACTATTGCAGTAAAAAT 352566034 Query 1447 CTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCAATT 1506 |||| ||| |||||||||| || ||| | || | ||||||| |||||||| ||| | Sbjct 352566033 ATAATATGGATAGAAGAAGCAGGAAACCTAGGCCAAGAAGTAAATAAATTTAAAACAACT 352565974 Query 1507 ATGAGTGGCCAG-GCA--ATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAA 1563 ||| ||| || ||| || |||||||||||||||| ||||| || ||||| || || Sbjct 352565973 ATGTCTGGACAAAGCATTATTAGACTAGACCAAAAAGTAAAAGGAAGTAAATCTATAAAA 352565914 Query 1564 CCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAA 1623 |||||||||| | ||||| | ||||||||||| |||| |||| |||||| |||| Sbjct 352565913 TCAACTCCAGTTGTAATGACATCAAATGAAGATATTACAAATGTCACAATTGGTTATGAA 352565854 Query 1624 CTAAAACCAGAACA--CAAACAACCTATCATGGACAGATGTGTCAGAATCTATCTAAACA 1681 ||| ||||||||| | | |||| | |||||||||| | || | |||| Sbjct 352565853 TTAAGACCAGAACATTCTGAGCTCCTA--AAACACAGATGTGTTAACATAAGATTTAACA 352565796 Query 1682 ATAGACTAAATGGTGACTTTGGTTTGCTTGAACACAATGAAATTCCAAGCATATTCAAA 1740 || || |||| | |||||| | |||| |||| ||||| | || ||||||||| Sbjct 352565795 CTACTTTAGGTGGTCAGTTTGGTATCATTGACAACAAAGAAATACTAAATATATTCAAA 352565737 Score = 91.5 bits (100), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 2619 CTTATCCAACAA---GGACACAATCCATACATCTACTTCAACCAAGCCGACGACGACTTC 2675 ||||| |||||| ||| | || | ||| |||||| |||| |||| | || || Sbjct 352565118 CTTATACAACAATTGGGAAATAACTCTTACTTCTACTACAACAAAGCTAATCCTGAATTT 352565059 Query 2676 ATCAAAAACACTGACCAAGCACCAGACTGGGGTGGTAAGTTCGGTAACTTTGCCTTCAGA 2735 |||||| | || | ||||| |||||||||||| |||| || ||| ||||||| | Sbjct 352565058 ATCAAAGAAACCAATGAAGCAAAAGACTGGGGTGGATAGTTAGGAAACAAAGCCTTCACA 352564999 Query 2736 CTAAAAAAGGCAATAGCACCTGAACTGGCACCTCC-AGCaaaaaaaccaaaaa 2787 | || || ||||||||||| |||||| | || || | ||||||| |||||| Sbjct 352564998 ATCAAGAAAGCAATAGCACCAGAACTGACTCCACCAAAAAAAAAAAGCAAAAA 352564946 >seq8 Length=312544902 Score = 190 bits (210), Expect = 6e-45 Identities = 292/415 (70%), Gaps = 5/415 (1%) Strand=Plus/Plus Query 1249 AATCCATACAAAGTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGA 1308 |||||| |||||| ||||| | | | ||| | ||||||||| || ||| || Sbjct 230387584 AATCCAATCAAAGTAACACATGCTGTCATGTACTGCTTAAACAAACAATGTGGAAAAAGA 230387643 Query 1309 AACACAATCCTACTATGTGGACCTGCAAGTACAGGCAAAAGCCTACTAGCACAAGAAATA 1368 ||||||||| || | | ||||| | || ||||| ||| || || ||||| | | ||| Sbjct 230387644 AACACAATCTTATTGTAAGGACCAACTAGCACAGGAAAAGGCTTAATAGCATAGAATATA 230387703 Query 1369 GCAAAACTAGTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAAT 1428 || | |||||||| ||| ||||| ||| |||||||| ||||||||| || ||| Sbjct 230387704 TTCAAGTTGGTTGGTAACACTGGCTGCTACAATCCAGCAAATGTAAACTTTCCTTTTAAT 230387763 Query 1429 GACTGTAGCAACAAAAACCTAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTA 1488 ||| | ||| |||||| |||| ||| ||||||| |||||| | | ||||||| Sbjct 230387764 GACAGATGCAGGAAAAACATAATATGGATAGAAGA----GGTAACCTATGACAACAAGTA 230387819 Query 1489 AACCAATTTAAAGCAATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGC 1548 ||| |||| |||||||| ||| || || | || ||||||||||||||||| || || Sbjct 230387820 AACTAATTCAAAGCAATAATGTCAGGACAAAC-ATTAGACTAGACCAAAAAGGAAATGGA 230387878 Query 1549 AGCAAATCAATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAGTC 1608 || ||| ||| |||| |||| || || |||| | |||||||| || | | | | Sbjct 230387879 AGTAAAAGTATTTAACCTCCTCCTGTAATAATGATCAGCAATGAAGACATTATTATAATT 230387938 Query 1609 ATGGTTGGTTCTGAACTAAAACCAGAACACAAACAACCTATCATGGACAGATGTG 1663 | |||| | ||| | | ||||||||||| |||| || | ||||||||| Sbjct 230387939 AAAATTGGATGTGACATTAGACCAGAACACAGTGAACCAATTAAACACAGATGTG 230387993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14731991721760