Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq23094 302 1e-78 seq93414 167 7e-38 seq71896 122 3e-24 seq67558 98.7 3e-17 seq111540 93.3 1e-15 >seq23094 Length=55390 Score = 302 bits (334), Expect = 1e-78 Identities = 407/563 (72%), Gaps = 24/563 (4%) Strand=Plus/Plus Query 2780 CAGCCCCCTCTGGTCTGGGAACTAATACGATGGCTACAGGCAGTGGCGCACCAATGGCAG 2839 |||||||| || | ||||| || || ||||| ||| |||| | |||||||| Sbjct 39610 CAGCCCCCACTAATTTGGGATCTGGTATCATGGCAGAAGGAGGTGGAGTACCAATGGGCA 39669 Query 2840 ACAATAACGAGGGCGCCGACGGAGTGGGTAATTCCTCGGGAAATTGGCATTGCGATTCCA 2899 | ||| | |||| || || |||| |||||||| | |||||||| |||||| | ||| Sbjct 39670 ATAATCAACAGGGTGCTGATAGAGTAGGTAATTCTTTGGGAAATTAGCATTGTGGTTCTC 39729 Query 2900 CATGGATGGGCGACAGAGTCATCACC--ACCAGCACCCGAACCTGGGCCCTGCCCACCTA 2957 |||||||||| ||||||||| |||| | ||| | | |||| | ||| |||| Sbjct 39730 AATGGATGGGCCACAGAGTCACCACCCGAAAAGCTCTC-----TGGGTCTCGCCTACCTG 39784 Query 2958 CAACAACCACCTCTACAAACA------AAT--TTCCAGCCAATCAGGAGCCTCGAACGAC 3009 |||||||||||||||||| || ||| | ||| ||| |||| | | | Sbjct 39785 CAACAACCACCTCTACAAGCAGTTCAAAATAGTGCCA-CCA--CAGGC------AGTGCC 39835 Query 3010 AATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGACTTCAACAGATTCCACTGC 3069 || |||||||||||| |||| |||| |||||| |||||||||||||||||||||||||| Sbjct 39836 AACAACTACTTTGGCTTCAGCTCCCCCTGGGGGAATTTTGACTTCAACAGATTCCACTGC 39895 Query 3070 CACTTTTCACCACGTGACTGGCAAAGACTCATCAACAACAACTGGGGATTCCGACCCAAG 3129 ||||| || | |||||||||||||| ||||| |||||||||||| | ||||| || Sbjct 39896 CACTTCAGCCCCTGAGACTGGCAAAGACTTATCAATAACAACTGGGGACTGCGACCTAAA 39955 Query 3130 AGACTCAACTTCAAGCTCTTTAACATTCAAGTCAAAGAGGTCACGCAGAATGACGGTACG 3189 | || ||||||| ||||| ||||| |||||||| || ||||| || | | | Sbjct 39956 AACCTGCACTTCAAACTCTTCAACATCCAAGTCAAGGAAGTCACAAGGAGGAATGTTGAA 40015 Query 3190 ACGACGATTGCCAATAACCTTACCAGCACGGTTCAGGTGTTTACTGACTCGGAGTACCAG 3249 || || ||||| |||||||||||||||| | |||| || ||| | ||||| |||| || Sbjct 40016 ACCACAATTGCTAATAACCTTACCAGCATGATTCAAGTCTTTGCGGACTCAGAGTGTCAA 40075 Query 3250 CTCCCGTACGTCCTCGGCTCGGCGCATCAAGGATGCCTCCCGCCGTTCCCAGCAGACGTC 3309 ||||| || || || | || || | | ||||| | || ||||| | || || Sbjct 40076 CTCCCATATGTGATCAGGAGTGCTCAAGAGAGGTGCCTACTCCCCTTCCCTCCTGATGTG 40135 Query 3310 TTCATGGTGCCACAGTATGGATA 3332 || ||| |||| ||||||||||| Sbjct 40136 TTTATGTTGCCTCAGTATGGATA 40158 Score = 277 bits (306), Expect = 5e-71 Identities = 329/446 (74%), Gaps = 0/446 (0%) Strand=Plus/Plus Query 1272 GGATGGGCCACGAAAAAGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAACT 1331 || ||||||| ||| | || ||||| || |||||||||||| | | ||| || ||| Sbjct 38286 GGCTGGGCCAGAAAAGAATTTGGCAAAAGAAACACCATCTGGGTCTATGGAAAGGCCACT 38345 Query 1332 ACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTA 1391 || ||||| || ||||| | ||| ||| | || ||||| |||||||||||||||| || Sbjct 38346 ACTGGGAACACTAACATTGTGGAAGCCGTTGCACACACGGTGCCCTTCTACGGGTATGTG 38405 Query 1392 AACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGG 1451 || ||||| |||||||||||||| |||| || ||||| || || ||| | ||||||||| Sbjct 38406 AATTGGACTAATGAGAACTTTCCATTCAGTGATTGTGTGGATAAAATGCTCATCTGGTGG 38465 Query 1452 GAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGC 1511 ||||| || ||||| ||| | | ||| || ||| | || |||||||| || |||||| Sbjct 38466 GAGGAAGGCAAGATTACCTCTATGGTGGTTGAGACAGCTAAAGCCATCCTTGGAGGAGCT 38525 Query 1512 AAGGTGCGCGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATC 1571 || || | ||||||||| |||| |||||||| | || || || ||||| || ||| Sbjct 38526 AAAGTTCAGGTGGACCAGGAATGTAAGTCCTCTGTTCAAATTGATTGTACTCCAGTCATC 38585 Query 1572 GTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACAC 1631 ||||||||||||||||||||||| | || | || ||||| | | || ||| || || Sbjct 38586 ATCACCTCCAACACCAACATGTGCTACATGGTGGATCGGAACACTATGATCTTTGAGCAT 38645 Query 1632 CAGCAGCCGTTGCAAGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGATCATGAC 1691 ||||| ||| ||||||| ||||| |||| ||| | || | ||||| Sbjct 38646 AAGCAGTTGTTACAAGACCACATGTTTCAATTCATGCTCGTGGAGAGACTTCCTGATGAC 38705 Query 1692 TTTGGGAAGGTCACCAAGCAGGAAGT 1717 ||||| ||||| || ||| |||| || Sbjct 38706 TTTGGCAAGGTGACAAAGGAGGAGGT 38731 Score = 147 bits (162), Expect = 6e-32 Identities = 270/393 (69%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 4006 CCAGGCATGGTCTGGCAGGACAGAGATGTGTACCTTCAGGGGCCCATCTGGGCAAAGATT 4065 || || |||||||||||| | ||||| | | || || || ||||| ||||| |||||| Sbjct 40856 CCTGGAATGGTCTGGCAGAAAAGAGACATCAATCTCCATGGTCCCATTTGGGCTAAGATT 40915 Query 4066 CCACACACGGACGGACATTTTCACCCCTCTCCCCTCATGGGTGGATTCGGACTTAAACAC 4125 || ||||| || || | || || |||||||| || |||||||| || || || ||||| Sbjct 40916 CCTCACACAGATGGTTACTTCCATCCCTCTCCTCTTATGGGTGGCTTTGGTCTCAAACAA 40975 Query 4126 CCTCCTCCACAGATTCTCATCAAGAACACCCCGGTACCTGCGAATCCTTCGACCACCTTC 4185 ||||||| |||| | | || || ||| | || || ||||| || || | |||| |||| Sbjct 40976 TCTCCTCCTCAGAATATGATTAAAAACTCTCCTGTCCCTGCTAACCCCACCACCATCTTC 41035 Query 4186 AGT-GCGGCAAAGTTTGCTTCCTTCATCACACAGTACTCCACGGGACAGGTCAGCGTGGA 4244 | | | |||| | || || ||||| || ||||| | || || || | || || Sbjct 41036 ACTCTTGTCAAACAAAAC-TCTTTTATCACTCAATACTCTATTGGTCAAGTGACTGTAGA 41094 Query 4245 GATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAACGCTGGAATCCCGAAATTCAGTACAC 4304 || || ||||| || || ||||||| ||| |||| ||| ||||| || | || Sbjct 41095 AATTGAATGGGAACTCCATAAGGAAAGTTCCAAGAAATGGACTCCTGAAATCCATTTTAC 41154 Query 4305 TTCCAACTACAACAAGTCTGTTAATGTGGACTTTACTGTGGACACTAATGGCGTGTATTC 4364 |||||| | || || || || | | ||| || ||| | | || || || | Sbjct 41155 TTCCAATTTCAGAAACACTATTGACTTATCTTTTGCTCCCAACAATGAAGGTGTATACTG 41214 Query 4365 AGAGCCTCGCCCCATTGGCACCAGATACCTGAC 4397 | ||||| |||||||| ||| ||||||| || Sbjct 41215 TAAACCTCGTCCCATTGGTACCTGATACCTTAC 41247 >seq93414 Length=10396 Score = 167 bits (184), Expect = 7e-38 Identities = 234/326 (72%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 1339 AGACCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGTAAACTGGA 1398 |||| ||||| || || ||||| || |||||||| || | | | || || | || |||| Sbjct 1405 AGACAAACATTGCAGAAGCCATCGCACACACTGTACCTTCCCATGGCTGTATGAATTGGA 1464 Query 1399 CCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTGGGAGGAGG 1458 ||||||| ||| |||||||| | |||||||| || | ||| | ||| ||| ||| || | Sbjct 1465 CCAATGA-AACCTTCCCTTCCATGACTGTGTAGATGAAATGATCATCCGGTAGGAAGAAG 1523 Query 1459 GGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAGCAAGGTGC 1518 | ||||| || || || |||| | | |||| ||||||| | ||| || || | Sbjct 1524 ACACAATGACTGCTAAAATCATGGAAATGACTAAAGTCATTCTCAGTGGAGCTAAAGTTC 1583 Query 1519 GCGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGACCCGACTCCCGTGATCGTCACCT 1578 | ||||| || |||||||||||||| | || | || | || || ||||| |||| | Sbjct 1584 GTGTGGATCATAAATGCAAGTCCTCTGTTCAACTGGAGTCTACACCAGTGATTATCACTT 1643 Query 1579 CCAACACCAACATGTGCGCCGTGATTGACGGGAACTCAACGACCTTCGAACACCAGCAGC 1638 | |||| |||||||| ||| || ||||| | ||||| || ||| || |||||| Sbjct 1644 CTAACA-GGACATGTGCCGTGTGGAGGATGGGAATACCACGACATTTGAATACAAGCAGC 1702 Query 1639 CGTTGCAAGACCGGATGTTCAAATTT 1664 |||| ||||| | ||||| |||||| Sbjct 1703 TGTTGGAAGACTGCATGTTTAAATTT 1728 >seq71896 Length=30598 Score = 122 bits (134), Expect = 3e-24 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 4012 ATGGTCTGGCAGGACAGAGATGTGTACCTTCAGGGGCCCATCTGGGCAAAGATTCCACAC 4071 ||||||||| | ||||||||||| ||||| || || |||||||| ||||| || ||| Sbjct 11025 ATGGTCTGGGATGACAGAGATGTCTACCTGCAAAAACCTATCTGGGCTAAGATCCCTCAC 11084 Query 4072 ACGGACGGACATTTTCACCCCTCTCCCCTCATGGGTGGATTCGGACTTAAACACCCTCCT 4131 | || |||| || ||||| || || |||||||||||||| ||| ||| | | |||| Sbjct 11085 ATTGATAGACACTTCCACCCTTCGCCTCTCATGGGTGGATTTTTACTGAAAAAGCTTCCT 11144 Query 4132 CCACAGATTCTCATCAAGAACACCCCGGTACCTGCGAATCCT 4173 | ||||| | ||||||||||||| | | ||||| || ||| Sbjct 11145 CTTCAGATCATGATCAAGAACACCCAGATGCCTGCTAACCCT 11186 >seq67558 Length=25472 Score = 98.7 bits (108), Expect = 3e-17 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 4006 CCAGGCATGGTCTGGCAGGACAGAGATGTGTACCTTCAGGGGCCCATCTGGGCAAAGATT 4065 || || ||||||||| |||||||||| | || || || || | || | ||| |||||| Sbjct 10648 CCTGGAATGGTCTGGTAGGACAGAGACATCTATCTACAAGGTCTGATGTAGGCCAAGATT 10589 Query 4066 CCACACACGGACGGACATTTTCACCCCTCTCCCCTCATGGGTGGATTCGGACTTAAACAC 4125 || || | || ||||| || ||| || || || ||||||| || ||||| ||| | Sbjct 10588 CCTCATGCTGATGGACACTTCCACAATTCACCTCTGCTGGGTGGTTTTGGACTGAAAAAT 10529 Query 4126 CCTCCTCCACAGATTCTCATCAAGAACACCCCGGTACCTGCGAATCCTTCGACCACCTTC 4185 |||||||| |||| | ||||||||||| || | ||||| || || | | ||| Sbjct 10528 CCTCCTCCTCAGAACATGATCAAGAACACTCCTATGCCTGCTAACTCTCCAGTGGCTTTC 10469 Query 4186 AGTGCGG-CAAAGTTTGCTTCCTTCATCACACAGTACTCCACGGGACAGGT 4235 | | || |||| | || |||||||| |||||||| || || || || Sbjct 10468 ACTCTGGTCAAACAGAAC-TCTTTCATCACCCAGTACTCAACTGGTCAAGT 10419 >seq111540 Length=9601 Score = 93.3 bits (102), Expect = 1e-15 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 3025 TACAGCACCCCT-TGGGGGTATTTTGACTTCAACAGATTCCACTGCCACTTTTCACCACG 3083 || ||||| || ||||| ||| |||| ||||||||||| | |||| || | Sbjct 9097 TATAGCACAACTCTGGGGATATATTGATTTCAACAGATTATAGCATCACTGGAGTCCTAG 9038 Query 3084 TGACTGGCAAAGACTCATCAACAACAACTGGGGATTCCGACCCAAGAGACTCAACTTCAA 3143 |||||||||||||||||||||| | ||||||| || ||||||| |||| |||| Sbjct 9037 AGACTGGCAAAGACTCATCAACAGCTGCTGGGGACTCAGACCCAAATCCCTCAGTGTCAA 8978 Query 3144 GCTCTTTAACATTCAAGTCAAAGAGGTCACGCAGAATGACGGTACGACGACGATTGCCAA 3203 | |||| ||||| || ||||||| || | | | | | || || | ||| | ||| || Sbjct 8977 GGTCTTCAACATCCATATCAAAGAAGTTATGGAATAAAATGGCACAATGACCACTGCAAA 8918 Query 3204 TAACCTTACCAGCACGGTTCAGGTGTTT 3231 ||||| || ||| | || |||||| Sbjct 8917 CAACCTGACATCCACTATCCAAGTGTTT 8890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14815660854060