Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq108040 242 1e-60 seq88340 183 1e-42 seq72496 167 8e-38 seq45063 154 5e-34 seq62551 143 9e-31 seq112444 123 8e-25 seq102478 118 4e-23 seq58573 102 3e-18 seq117373 87.8 6e-14 >seq108040 Length=26046 Score = 242 bits (268), Expect = 1e-60 Identities = 284/381 (75%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 1421 TGTGTTTTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTT-TCATGGACCAGCAAG 1479 ||||| ||||| | |||| ||| |||||||| ||| || | | ||| ||||||||||| Sbjct 11765 TGTGTCTTAAACAAACAACTTGGAAAAAGAAACACAATTTTACTCTCA-GGACCAGCAAG 11823 Query 1480 TACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTA 1539 || |||||| | || |||||| || | || |||||||| ||||| || Sbjct 11824 CACTGGAAAAAGCTTAATAGCTCAAAAAATCTGTGAGTTGGTTGGTAATGTCGGTTGCTA 11883 Query 1540 TAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGAT 1599 ||| || |||||||| |||||||| ||||||||| | ||||||| | |||||||| Sbjct 11884 CAATCCAAGCAATGTAAACTTTCCATTCAATGACTGTTGCTCTAAAAATATCATTTGGAT 11943 Query 1600 TGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACA 1659 ||||||||| || || | || || ||||| || ||||| ||||| |||| || ||||| Sbjct 11944 TGAAGAAGCAGGAAATCTAGGACACCAAGTAAACCAATTCAAAGCCATTTTGTCAGGACA 12003 Query 1660 AACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAAT 1719 | | || ||| | || |||||||| ||||| || || || |||||||| |||||||| Sbjct 12004 ATCTATCAGATTAGACCAAAAAGGAAAAGGCAGCAAATCTATAGAACCAACACCAGTAAT 12063 Query 1720 TATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACA 1779 |||||| | |||||| |||||||| || ||||| || || ||| |||||| ||||| Sbjct 12064 AATGACATCCAATGAAGATATAACACAAGTAAGAATAGGCTGCGAACTAAGACCAGAACA 12123 Query 1780 TACACAACCAATAAGAGACAG 1800 || ||||||||| | |||| Sbjct 12124 CACCGAACCAATAAAACACAG 12144 >seq88340 Length=24873 Score = 183 bits (202), Expect = 1e-42 Identities = 244/338 (72%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 1442 GGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCT 1501 ||||||||||| ||| | | || || ||||||| || ||||||||| | | |||||| Sbjct 11212 GGTAAAAGAAACACAATCTTATTACAAGGACCAGTGAGCACAGGAAAAAGTCTAATTGCT 11153 Query 1502 CAAGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTT 1561 ||| ||| | || ||||||||||| || || ||| || | |||||||| ||| Sbjct 11152 CAAAATATATGTGAGTTAGTTGGTAATGTTGGATGCTACAATTCATCCAATGTAAACTTT 11093 Query 1562 CCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGT 1621 || || || || || ||| ||||| | || | |||||| ||||| | ||||| || Sbjct 11092 CCTTTCAACGATTGCTGCAACAAAAACATTATATCGATTGAGGAAGCAAGAAACTTGGGG 11033 Query 1622 CAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAA 1681 || ||||| || |||||||||||||| || |||||| || ||| | | |||||| Sbjct 11032 CAGCAAGTAAACCAATTTAAAGCAATAATGTCAGGACAA--AACAAGATTATACCAAAAA 10975 Query 1682 GGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATA 1741 || || || || ||| ||||||||| ||||| |||| |||||| ||||||| | | Sbjct 10974 GGAAAGGGCAGCAAGTCCATTGAACCACCTCCAATAATAATGACATCTAATGAGGACACT 10915 Query 1742 ACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACA 1779 || | | | || ||| ||||||| ||||||||| || Sbjct 10914 ACTTGTCTCAAAACTGGCTGTGAAGTAAGACCTGAGCA 10877 >seq72496 Length=32857 Score = 167 bits (184), Expect = 8e-38 Identities = 200/270 (74%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 1532 GGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTA 1591 || ||||| ||| || | ||||| |||||| |||||| |||||| ||||||||| || Sbjct 17133 GGATGTTACAATCCATCTAATGTGAATTTTTCATTTA-TGACTGCTGCAATAAAAAGATA 17191 Query 1592 ATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGT 1651 || || ||| | || |||||| | ||||| ||||| || ||||||||| | || Sbjct 17192 ATATGA---GAACAGGCAGGTAACCTAGGTCAGCAAGTAAACCAATTTAAATCGATAATG 17248 Query 1652 TCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACT 1711 || ||||||| || ||| | | |||||| || || || ||||| ||||||||||| Sbjct 17249 TCAGGACAAAGCATAAGACTAGGTCAAAAGGGGAAGGGCAGTAAAACCATTGAACCAACA 17308 Query 1712 CCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGA 1771 || || || |||||| | | |||| | | |||| | || |||||||| ||||| ||| Sbjct 17309 CCTGTCATAATGACATCCAGTGAAGACACAACAGTAGTAAGAATTGGTTGTGAGATCAGA 17368 Query 1772 CCTGAACATACACAACCAATAAGAGACAGA 1801 ||||||| ||| ||| ||||||| ||||| Sbjct 17369 CCTGAACTCACAGAACAAATAAGACACAGA 17398 >seq45063 Length=75060 Score = 154 bits (170), Expect = 5e-34 Identities = 185/248 (75%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579 || |||||||| || ||||| ||| || | | ||| || ||||| || ||||| || | Sbjct 22118 GTTGGTAATGTAGGATGTTACAATCCATCTA-TGTTAACTTTCCTTTCAATGATTGCTGC 22060 Query 1580 AATAAAAA--TTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAAT 1637 || ||||| || || |||| ||||||||||||||||| || || ||||| || |||| Sbjct 22059 AACAAAAAACTTCTATAGGGATAGAAGAAGCTGGTAACTTAGGACAGCAAGTAAACCAAT 22000 Query 1638 TTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGC 1697 |||||| ||| || ||||||| || ||| | ||| ||||| | ||||| | ||| Sbjct 21999 TTAAAGTAATCATGTCAGGACAAAGCATCAGACTAGATGAAAAA-GAAAAGGTAATAAAT 21941 Query 1698 AAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTG 1757 ||||||||||||||| |||| |||||| | |||||| || ||| ||| ||||||| Sbjct 21940 CCATTGAACCAACTCCAATAATAATGACATCCAATGAAGGTACAACTTGTGTCAGAATTG 21881 Query 1758 GATGTGAA 1765 | |||| Sbjct 21880 ACTATGAA 21873 >seq62551 Length=99649 Score = 143 bits (158), Expect = 9e-31 Identities = 197/273 (72%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579 || |||||| ||||||| || |||||||| || || ||||| || |||||||||||| Sbjct 51397 GTTGGTAATATTGGTTGCTACAATGCAGCTAACATATCATTTCCTTTCAATGACTGTACC 51456 Query 1580 AATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTT 1639 | ||| || ||||| |||| || || | || | || | ||| | ||||||| Sbjct 51457 TGCAGAAACATAGTTTGGGTTGAGGAGGCAGAAAATCTAGGATAGCAAATCGATCAATTC 51516 Query 1640 AAAGCAATTTGTTCT-GGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCA 1698 ||| ||| | | || || || ||| ||||||| ||||||||||| ||| |||| || Sbjct 51517 AAA-CAACTAATGCTAGGGCAGACAGTTAGAATAGATCAAAAAGGGAAAAGAAGCAAAAC 51575 Query 1699 AATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGG 1758 || |||||||| | ||||| |||| || ||||| || ||||| || ||||||| Sbjct 51576 CATAGAACCAACACTTGTAATCATGATCACCAATGAGAACATAACTGAAGTCAGAATTGA 51635 Query 1759 ATGTGAAGAAAGACCTGAACATACACAACCAAT 1791 ||||| |||| |||||||||| | ||||| Sbjct 51636 CTGTGAGTTAAGATCTGAACATACTGAGCCAAT 51668 >seq112444 Length=40188 Score = 123 bits (136), Expect = 8e-25 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1612 TAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAAT 1671 |||||| || ||| |||| || ||||||||||||||| || ||||||| |||||| | Sbjct 11165 TAACTTAGGACAATAAGTAAACCAATTTAAAGCAATTATGTCAGGACAAAGCATTAGACT 11224 Query 1672 TGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAA 1731 || | |||||| ||||| || || ||||||||||||| |||||| |||||| |||| Sbjct 11225 AGACCCAAAAGGGAAAGGCAGCAAATCTATTGAACCAACTCTAGTAATAATGACACCTAA 11284 Query 1732 TGAAAATATAACAATTGTGAGAATTGGATGTGA 1764 |||| | ||||| | | ||||||| ||||| Sbjct 11285 TGAAGACATAACTTATTTCAGAATTGACTGTGA 11317 >seq102478 Length=16333 Score = 118 bits (130), Expect = 4e-23 Identities = 199/280 (71%), Gaps = 11/280 (4%) Strand=Plus/Minus Query 1523 GGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAAT 1582 || |||||| |||| || ||| ||| |||||| | |||||||| |||||||| || | Sbjct 9430 GGAAATGTTCGTTGCTACAATCCAGTAAATGTGAGCTTTCCATTCAATGACTGCACTCAC 9371 Query 1583 AAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAA 1642 |||||| |||| ||| | ||| ||| | ||| | ||||||||| || ||||| ||| Sbjct 9370 AAAAATGTAATATGGGT-GAATAAGGAAG--ACTA-GATCAACAAGTCAACCAATTCAAA 9315 Query 1643 GCAATTTGT-TCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAAT 1701 ||| | | | ||||||| ||||||| ||| ||||| |||||||| || || Sbjct 9314 -CAAGTGATATGTGGACAA----TTAGAATAGAT-AAAAAAGTAAAGGATCAAAAACAAC 9261 Query 1702 TGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATG 1761 ||||| | |||||| | ||||| | ||||| |||| |||| | ||||| | | | Sbjct 9260 TGAACTTATTCCAGTGACAATGACTAAAAATGAGGATATTACAAAAATCAGAATAGAACG 9201 Query 1762 TGAAGAAAGACCTGAACATACACAACCAATAAGAGACAGA 1801 |||| || ||||| | | || || || || | ||| ||| Sbjct 9200 TGAACTAAAACCTGCATACACTCAGCCCATTAAAGATAGA 9161 >seq58573 Length=95406 Score = 102 bits (112), Expect = 3e-18 Identities = 94/118 (80%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1662 CAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTA 1721 |||||||||||||| ||||||| ||||||| || |||||||||| |||||| || | Sbjct 61979 CAATTAGAATTGATTAAAAAGGAAAAGGAAACAAAACCATTGAACCAATTCCAGTTATCA 62038 Query 1722 TGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACA 1779 |||||||||||||| ||||||| | |||| |||||||||| || ||| |||| Sbjct 62039 CAACAACTAATGAAAACATAACAA-AATAAGAACTGGATGTGAACTAAAACCACAACA 62095 >seq117373 Length=15221 Score = 87.8 bits (96), Expect = 6e-14 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579 || ||||||||||||| ||| ||| || |||||||||| |||||||| |||||||| | Sbjct 12384 GTTGGTAATGTTGGTTATTACAATCCATCAAATGTAAACTTTCCATTCAATGACTGCTGC 12443 Query 1580 AATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAAC 1625 || ||||| || ||||| ||||| || || ||||| | |||| Sbjct 12444 AACAAAAACACTATCTGGATAGAAGAGGCAGGAAACTTAAGACAAC 12489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16870201248120