Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq23094 215 2e-52 seq111540 129 2e-26 seq93414 93.3 1e-15 seq33192 87.8 6e-14 >seq23094 Length=55390 Score = 215 bits (238), Expect = 2e-52 Identities = 493/733 (67%), Gaps = 23/733 (3%) Strand=Plus/Plus Query 3033 ATGGCAGAGGGAGGAGGCGGAGCTATGGGCGACTCTTCAGGGGGTGCCGATGGAGTGGGT 3092 |||||||| ||||| || | | | |||||| | | | |||||| ||| |||| ||| Sbjct 39639 ATGGCAGAAGGAGGTGGAGTACCAATGGGCAATAATCAACAGGGTGCTGATAGAGTAGGT 39698 Query 3093 AATGCCTCGGGAAATTGGCATTGCGATTCCCAATGGATGGGAAACACAGTCATCACAAAG 3152 ||| | | |||||||| |||||| | ||| ||||||||||| ||| ||||| ||| Sbjct 39699 AATTCTTTGGGAAATTAGCATTGTGGTTCTCAATGGATGGGCCACAGAGTCACCACC--- 39755 Query 3153 ACCACCAGAAC-CTGGGTCCTGCCAAGCTACAACAACCACATCTACAAAGCAATT---AC 3208 | | || | ||||||| ||| | || |||||||||| ||||||| ||| || | Sbjct 39756 -CGAAAAGCTCTCTGGGTCTCGCCTACCTGCAACAACCACCTCTACAA-GCAGTTCAAAA 39813 Query 3209 CAGCGGAACCTCTCAAGATGCAAATGTCCAGTATGCAGGATACAGTACCCCCTGGGGGTA 3268 || | ||| | ||| || | | | || | | ||| ||||||||||| | Sbjct 39814 TAGTGCCACCACAGGCAGTGCCAACAACTACTTTG---GCTTCAGCTCCCCCTGGGGGAA 39870 Query 3269 CTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACTGGCAGAGACTTATCAA 3328 ||||| |||||| | ||||||||||||||| ||| |||||||||| ||||||||||| Sbjct 39871 TTTTGACTTCAACAGATTCCACTGCCACTTCAGCCCCTGAGACTGGCAAAGACTTATCAA 39930 Query 3329 CAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCTTCAATGTCCAAGTCAA 3388 ||| | |||||| | |||| || || | ||||| ||||||| |||||||||| Sbjct 39931 TAACAACTGGGGACTGCGACCTAAAAACCTGCACTTCAAACTCTTCAACATCCAAGTCAA 39990 Query 3389 AGAAGTCACAACGCAGGATCAGACAAAGACCATTGCAAACAATCTCACCTCAACAATTCA 3448 |||||||||| | | || || || ||||| || || || ||| | ||||| Sbjct 39991 GGAAGTCACAAGGAGGAATGTTGAAACCACAATTGCTAATAACCTTACCAGCATGATTCA 40050 Query 3449 AGTCTTTACGGATGATGAGCATCAACTCCCGTATGTCCTGGGCTCGGCT-ACGGAAGGCA 3507 ||||||| |||| ||| ||||||||| ||||| | | ||| | | ||| Sbjct 40051 AGTCTTTGCGGACTCAGAGTGTCAACTCCCATATGTGATCAGGAGTGCTCAAGAGAGGTG 40110 Query 3508 CCATGCCGCCGTTCCCGTCGGATGTCTATGCCCTGCCGCAGTACGGGTACTGCACAATGC 3567 || | | || ||||| | ||||| | | |||| ||||| || || || || || Sbjct 40111 CC-TACTCCCCTTCCCTCCTGATGTGTTTATGTTGCCTCAGTATGGATATTGTACTTTGG 40169 Query 3568 ACACCAACCAGAATGGAGCACGGTTCAATGACCGTAGTGCATTCTACTGCTTAGAGTACT 3627 ||| | |||| | | ||| | || | || |||||||||| |||| | | Sbjct 40170 ACA------ATGATGG-GAAAAGTTTA--GAGAGGAGCGCATTCTACTTTCTAGAACATT 40220 Query 3628 TCCCTAGTCAGATGCTAAGAACAGGCAACAACTTTGAGTTCACATTTGACTTTGAAGAAG 3687 | |||| || || | |||| || |||||||||| || | | || |||||| | Sbjct 40221 TTCCTAACCAAATATTGAGAATGGGTAACAACTTTGCATTTTCCTATGCTTTTGAATCTG 40280 Query 3688 TTCCTTTCCATAGCATGTTCGCTCATTCACAGGACTTAGACAGGCTGATGAACCCCCTAG 3747 | || || |||||||||| ||| ||| ||| || || ||||||| || | Sbjct 40281 TCCCCTTTCATAGCATGTGGATACATAATCAGAGCTTGGATAGATTGATGAATCCATTGA 40340 Query 3748 TGGATCAATACCT 3760 | |||||||| || Sbjct 40341 TTGATCAATATCT 40353 Score = 194 bits (214), Expect = 5e-46 Identities = 232/315 (74%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 1484 TATCCTGTGCGGCTGGGTGAAGAGAGAGTTCAACAAAAGAAACGCCATATGGCTCTACGG 1543 ||||||| ||||||| | | ||| || |||||||||| |||| ||| |||| || Sbjct 38276 TATCCTGGTAGGCTGGGCCAGAAAAGAATTTGGCAAAAGAAACACCATCTGGGTCTATGG 38335 Query 1544 ACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTA 1603 | ||||| || ||||| || ||||||| ||||| |||| || | || |||||||| Sbjct 38336 AAAGGCCACTACTGGGAACACTAACATTGTGGAAGCCGTTGCACACACGGTGCCCTTCTA 38395 Query 1604 TGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCT 1663 || | ||| || |||||||||||||||||||| || | ||||||||| ||||||||||| Sbjct 38396 CGGGTATGTGAATTGGACTAATGAGAACTTTCCATTCAGTGATTGTGTGGATAAAATGCT 38455 Query 1664 GATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTT 1723 || ||||||||||| || || || || || ||| ||||| | || ||||| || | Sbjct 38456 CATCTGGTGGGAGGAAGGCAAGATTACCTCTATGGTGGTTGAGACAGCTAAAGCCATCCT 38515 Query 1724 GGGAGGGTCTGCTGTCCGGGTAGACCAGAAATGTAAAGGATCTGTTTGTATTGAACCTAC 1783 ||||| || || | ||| |||||| ||||||| |||||| ||||| ||| Sbjct 38516 TGGAGGAGCTAAAGTTCAGGTGGACCAGGAATGTAAGTCCTCTGTTCAAATTGATTGTAC 38575 Query 1784 TCCTGTAATTATTAC 1798 ||| || || || || Sbjct 38576 TCCAGTCATCATCAC 38590 >seq111540 Length=9601 Score = 129 bits (142), Expect = 2e-26 Identities = 293/433 (68%), Gaps = 21/433 (5%) Strand=Plus/Minus Query 3260 CTGGGGGTACTTTGATTTCAACCGCTTCCACTGCCACTTCTCCCCTAGAGACTGGCAGAG 3319 |||||| || ||||||||||| | || | |||| |||||||||||||| || Sbjct 9085 CTGGGGATATATTGATTTCAACAGATTATAGCATCACTGGAGTCCTAGAGACTGGCAAAG 9026 Query 3320 ACTTATCAACAACCATTGGGGAATCAGACCCAAGTCTCTTAAATTCAAGATCTTCAATGT 3379 ||| ||||||| | |||||| |||||||||| || || | ||||| ||||||| | Sbjct 9025 ACTCATCAACAGCTGCTGGGGACTCAGACCCAAATCCCTCAGTGTCAAGGTCTTCAACAT 8966 Query 3380 CCAAGTCAAAGAAGTCACAACGCAGGATCAGACAAAGACCATTGCAAACAATCTCACCTC 3439 ||| |||||||||| | | || |||| ||||| ||||||||| || || || Sbjct 8965 CCATATCAAAGAAGTTATGGAATAAAATGGCACAATGACCACTGCAAACAACCTGACATC 8906 Query 3440 AACAATTCAAGTCTTTACGGATGATGAGC-ATCAACTCCCGTATGTCCTGGGCTCGGCTA 3498 || || ||||| ||| | || || |||| ||| || | |||||||| || ||| Sbjct 8905 CACTATCCAAGTGTTTGCAGAGGA-GAGCTGTCAGCTTTCTTATGTCCTAGGGAACACTA 8847 Query 3499 CGGAAGGCACCATGCCGCCGTTCC--CGTCGGATGTCTATGCCCTGCCGCAGTACGGGTA 3556 | ||||| | | | | |||| | || | ||| ||| | | ||| || ||||| Sbjct 8846 CAGAAGGGTGCTTCTCCTCTTTCCTGCATCCG-TGTTCATG--TTCCTGCAATATGGGTA 8790 Query 3557 CTGCACAATGC---ACACCAACCAGA--ATGGAG--CACGGTTCAATGACCGTAGTGCAT 3609 |||||| | | || | |||||| ||| || ||| | || | | | | Sbjct 8789 CTGCACTCTTCATGACTTCTACCAGAATATGAAGTCCACCCTACAGTCA-------ACTT 8737 Query 3610 TCTACTGCTTAGAGTACTTCCCTAGTCAGATGCTAAGAACAGGCAACAACTTTGAGTTCA 3669 |||||| |||||| || | ||||| ||||| |||| || | ||||||||||| || Sbjct 8736 TCTACTTCTTAGAATATTGCCCTACTCAGAATTTAAGGACTAGGAACAACTTTGAATTTG 8677 Query 3670 CATTTGACTTTGA 3682 | ||||| ||||| Sbjct 8676 CCTTTGATTTTGA 8664 >seq93414 Length=10396 Score = 93.3 bits (102), Expect = 1e-15 Identities = 100/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Plus Query 1561 AGACCAACATTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGA 1620 |||| |||||||||||||| || || || ||||||| | | |||||||| | || |||| Sbjct 1405 AGACAAACATTGCAGAAGCCATCGCACACACTGTACCTTCCCATGGCTGTATGAATTGGA 1464 Query 1621 CTAATGAGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGG 1680 | ||||| ||| |||| || |||| ||||| ||| ||||| | || ||| ||| || | Sbjct 1465 CCAATGA-AACCTTCCCTTCCATGACTGTGTAGATGAAATGATCATCCGGTAGGAAGAAG 1523 Query 1681 GAAAAATGACT 1691 | ||||||| Sbjct 1524 ACACAATGACT 1534 >seq33192 Length=73296 Score = 87.8 bits (96), Expect = 6e-14 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 1593 GTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTT 1652 ||||||||||| |||||| |||| || || | | || || ||||||||||| | Sbjct 33386 GTACCCTTCTACTGCTGTGGGAACTAGATCAACAAAAGTTTCCCATTTAATGATTGCATG 33445 Query 1653 GATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACTAATAAGGTTGTTGAATCTGCA 1712 | |||||| | |||||||| | ||||| ||||||||||| | | || | || ||| Sbjct 33446 GCCAAAATGATCATTTGGTGAGGGGAGGACAAAATGACTAACACGATTATGGAGGCTGGC 33505 Query 1713 AAAGCAATTTTGGGAGGGTCTGCTGT 1738 |||||||| ||||| || || |||| Sbjct 33506 AAAGCAATATTGGGGGGCTCCTCTGT 33531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16177910463165