Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq23094 329 1e-86 seq67558 136 1e-28 seq71896 134 4e-28 seq93414 127 6e-26 seq111540 84.2 7e-13 >seq23094 Length=55390 Score = 329 bits (364), Expect = 1e-86 Identities = 535/762 (70%), Gaps = 26/762 (3%) Strand=Plus/Plus Query 2786 CAGCCCCCACAAGTTTGGGATCTAATACAATGGCTTCAGGCGGTGGCGCACCAATGGCAG 2845 |||||||||| | |||||||||| || ||||| ||| ||||| | |||||||| Sbjct 39610 CAGCCCCCACTAATTTGGGATCTGGTATCATGGCAGAAGGAGGTGGAGTACCAATGGGCA 39669 Query 2846 ACAATAACGAGGGTGCCGATGGAGTGGGTAATTCCTCAGGAAATTGGCATTGCGATTCCC 2905 | ||| | ||||||| ||| |||| |||||||| | ||||||| |||||| | ||| | Sbjct 39670 ATAATCAACAGGGTGCTGATAGAGTAGGTAATTCTTTGGGAAATTAGCATTGTGGTTCTC 39729 Query 2906 AATGGCTGGGCGACAGAGTCATCACCACCAGCACCAGAAC-CTGGGCCCTGCCCACTTAC 2964 ||||| ||||| ||||||||| ||||| | | || | ||||| | ||| || | | Sbjct 39730 AATGGATGGGCCACAGAGTCA---CCACCCGAAA-AGCTCTCTGGGTCTCGCCTACCTGC 39785 Query 2965 AACAACCATCTCTACAAGCAAATCTCCA----GCCAATCAGGAGCTTCAAACGACAACCA 3020 |||||||| ||||||||||| || | |||| || || | | |||| | Sbjct 39786 AACAACCACCTCTACAAGCAGTTCAAAATAGTGCCAC-CACAGGC----AGTGCCAACAA 39840 Query 3021 CTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTT 3080 ||||||||||| |||| |||| |||||| |||||||||| |||||||||||||||||||| Sbjct 39841 CTACTTTGGCTTCAGCTCCCCCTGGGGGAATTTTGACTTCAACAGATTCCACTGCCACTT 39900 Query 3081 CTCACCACGTGACTGGCAGCGACTCATTAACAACAACTGGGGATTCCGGCCCAAGAAACT 3140 | || | |||||||| |||| || || |||||||||||| | || || || || || Sbjct 39901 CAGCCCCTGAGACTGGCAAAGACTTATCAATAACAACTGGGGACTGCGACCTAAAAACCT 39960 Query 3141 CAGCTTCAAGCTCTTCAACATCCAAGTTAGAGGGGTCACGCAGAACGATGGCACGACGAC 3200 |||||| ||||||||||||||||| | | ||||| || ||| || || Sbjct 39961 GCACTTCAAACTCTTCAACATCCAAGTCAAGGAAGTCACAAGGAGGAATGTTGAAACCAC 40020 Query 3201 TATTGCCAATAACCTTACCAGCACGGTTCAAGTGTTTACGGACTCGGAGTATCAGCTCCC 3260 ||||| |||||||||||||||| | ||||||| ||| ||||||| |||| ||| ||||| Sbjct 40021 AATTGCTAATAACCTTACCAGCATGATTCAAGTCTTTGCGGACTCAGAGTGTCAACTCCC 40080 Query 3261 GTACGTGCTCGGGTCGGCGCACCAAGGCTGTCTCCCGCCGTTTCCAGCGGACGTCTTCAT 3320 || ||| || || || || | | || || | || || || | || || || || Sbjct 40081 ATATGTGATCAGGAGTGCTCAAGAGAGGTGCCTACTCCCCTTCCCTCCTGATGTGTTTAT 40140 Query 3321 GGTCCCTCAGTATGGATACCTCACCCTGAACAACG------GAAGTCAAGCGGTGGGACG 3374 | | |||||||||||||| || || |||| | |||| || | ||| | Sbjct 40141 GTTGCCTCAGTATGGATATTGTACTTTGGACAATGATGGGAAAAGTTTAGAG--AGGA-G 40197 Query 3375 CTCATCCTTTTACTGCCTGGAGTACTTCCCTTCGCAGATGCTAAGGACTGGAAATAACTT 3434 | || || |||| || || | || ||| || || | || | || || ||||| Sbjct 40198 CGCA---TTCTACTTTCTAGAACATTTTCCTAACCAAATATTGAGAATGGGTAACAACTT 40254 Query 3435 CCAATTCAGCTATACCTTCGAGGATGTACCTTTTCACAGCAGCTACGCTCACAGCCAGAG 3494 ||| |||| | || || ||| || ||||| |||| | || | ||||| Sbjct 40255 TGCATTTTCCTATGCTTTTGAATCTGTCCCCTTTCATAGCATGTGGATACATAATCAGAG 40314 Query 3495 TTTGGATCGCTTGATGAATCCTCTTATTGATCAGTATCTGTA 3536 |||||| | ||||||||||| | |||||||| |||||||| Sbjct 40315 CTTGGATAGATTGATGAATCCATTGATTGATCAATATCTGTA 40356 Score = 246 bits (272), Expect = 9e-62 Identities = 292/393 (74%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 1269 GGCTGGGCGC-AAAAGAAGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCAC 1327 |||||||| ||||||| || || || || |||||||||||| ||| ||| |||||| Sbjct 38286 GGCTGGGCCAGAAAAGAATTT-GGCAAAAGAAACACCATCTGGGTCTATGGAAAGGCCAC 38344 Query 1328 GACGGGTAAAACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGT 1387 || || || || ||||| | ||||||| | || ||| | |||||||||||||| | || Sbjct 38345 TACTGGGAACACTAACATTGTGGAAGCCGTTGCACACACGGTGCCCTTCTACGGGTATGT 38404 Query 1388 AAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTG 1447 || ||||| |||||||||||||| |||| ||||| || || || ||| | |||||||| Sbjct 38405 GAATTGGACTAATGAGAACTTTCCATTCAGTGATTGTGTGGATAAAATGCTCATCTGGTG 38464 Query 1448 GGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAG 1507 |||||| |||||||| || | | ||| || |||| || || ||||| || || ||| Sbjct 38465 GGAGGAAGGCAAGATTACCTCTATGGTGGTTGAGACAGCTAAAGCCATCCTTGGAGGAGC 38524 Query 1508 CAAGGTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGAT 1567 || || | |||||||| | || ||||| || | || || || ||||| || || Sbjct 38525 TAAAGTTCAGGTGGACCAGGAATGTAAGTCCTCTGTTCAAATTGATTGTACTCCAGTCAT 38584 Query 1568 CGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCA 1627 | ||||||||||||||||||||||| | || | || |||||| | | ||| ||||| Sbjct 38585 CATCACCTCCAACACCAACATGTGCTACATGGTGGATCGGAACACTATGATCTTTGAGCA 38644 Query 1628 TCAGCAGCCGCTGCAGGACCGGATGTTTGAATT 1660 | ||||| | | || |||| |||||| |||| Sbjct 38645 TAAGCAGTTGTTACAAGACCACATGTTTCAATT 38677 Score = 161 bits (178), Expect = 3e-36 Identities = 271/392 (69%), Gaps = 0/392 (0%) Strand=Plus/Plus Query 4015 CCTGGCATGGTGTGGCAAGATCGTGACGTGTACCTTCAAGGACCTATCTGGGCAAAGATT 4074 ||||| ||||| ||||| | | ||| | | || || || || || ||||| |||||| Sbjct 40856 CCTGGAATGGTCTGGCAGAAAAGAGACATCAATCTCCATGGTCCCATTTGGGCTAAGATT 40915 Query 4075 CCTCACACGGATGGACACTTTCATCCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACAT 4134 |||||||| ||||| |||| ||||| |||||||| ||||| |||||||| || ||||| Sbjct 40916 CCTCACACAGATGGTTACTTCCATCCCTCTCCTCTTATGGGTGGCTTTGGTCTCAAACAA 40975 Query 4135 CCGCCTCCTCAAATCATGATCAAAAATACTCCGGTACCGGCAAATCCTCCGACGACTTTC 4194 | |||||||| | ||||| ||||| |||| || || || || || | || | ||| Sbjct 40976 TCTCCTCCTCAGAATATGATTAAAAACTCTCCTGTCCCTGCTAACCCCACCACCATCTTC 41035 Query 4195 AGCCCGGCCAAGTTTGCTTCATTTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAA 4254 | | | ||| || ||||||||||| ||||| | ||| || || | || ||| Sbjct 41036 ACTCTTGTCAAACAAAACTCTTTTATCACTCAATACTCTATTGGTCAAGTGACTGTAGAA 41095 Query 4255 ATTGAGTGGGAGCTACAGAAAGAAAACAGCAAACGTTGGAATCCAGAGATTCAGTACACT 4314 ||||| ||||| || || || |||| ||| |||| ||| || || || | ||| Sbjct 41096 ATTGAATGGGAACTCCATAAGGAAAGTTCCAAGAAATGGACTCCTGAAATCCATTTTACT 41155 Query 4315 TCCAACTACAACAAGTCTGTTAATGTGGACTTTACTGTAGACACTAATGGTGTTTATAGT 4374 ||||| | || || || || | | ||| || ||| | | ||||| || || Sbjct 41156 TCCAATTTCAGAAACACTATTGACTTATCTTTTGCTCCCAACAATGAAGGTGTATACTGT 41215 Query 4375 GAACCTCGCCCTATTGGAACCCGGTATCTCAC 4406 ||||||| || ||||| ||| | || || || Sbjct 41216 AAACCTCGTCCCATTGGTACCTGATACCTTAC 41247 >seq67558 Length=25472 Score = 136 bits (150), Expect = 1e-28 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 4015 CCTGGCATGGTGTGGCAAGATCGTGACGTGTACCTTCAAGGACCTATCTGGGCAAAGATT 4074 ||||| ||||| ||| | || | ||| | || || ||||| | || | ||| |||||| Sbjct 10648 CCTGGAATGGTCTGGTAGGACAGAGACATCTATCTACAAGGTCTGATGTAGGCCAAGATT 10589 Query 4075 CCTCACACGGATGGACACTTTCATCCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACAT 4134 ||||| | ||||||||||| || ||| |||||| |||| || |||||||||||| || Sbjct 10588 CCTCATGCTGATGGACACTTCCACAATTCACCTCTGCTGGGTGGTTTTGGACTGAAAAAT 10529 Query 4135 CCGCCTCCTCAAATCATGATCAAAAATACTCCGGTACCGGCAAATCCTCCGACGACTTTC 4194 || |||||||| | ||||||||| || ||||| | || || || |||| | ||||| Sbjct 10528 CCTCCTCCTCAGAACATGATCAAGAACACTCCTATGCCTGCTAACTCTCCAGTGGCTTTC 10469 Query 4195 AGCCCGGCCAAGTTTGCTTCATTTATCACTCAGTACTCCACTGGACAGGT 4244 | | || ||| || || ||||| |||||||| ||||| || || Sbjct 10468 ACTCTGGTCAAACAGAACTCTTTCATCACCCAGTACTCAACTGGTCAAGT 10419 >seq71896 Length=30598 Score = 134 bits (148), Expect = 4e-28 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 4011 CTTACCTGGCATGGTGTGGCAAGATCGTGACGTGTACCTTCAAGGACCTATCTGGGCAAA 4070 ||||||| | ||||| ||| | || | || || ||||| ||| |||||||||||| || Sbjct 11015 CTTACCTTGAATGGTCTGGGATGACAGAGATGTCTACCTGCAAAAACCTATCTGGGCTAA 11074 Query 4071 GATTCCTCACACGGATGGACACTTTCATCCTTCTCCTCTGATGGGAGGCTTTGGACTGAA 4130 ||| ||||||| ||| ||||||| || ||||| ||||| ||||| || ||| |||||| Sbjct 11075 GATCCCTCACATTGATAGACACTTCCACCCTTCGCCTCTCATGGGTGGATTTTTACTGAA 11134 Query 4131 ACATCCGCCTCCTCAAATCATGATCAAAAATACTCCGGTACCGGCAAATCCTCCGACGAC 4190 | | | |||| ||| ||||||||||| || || | | | || || || |||| | | | Sbjct 11135 AAAGCTTCCTCTTCAGATCATGATCAAGAACACCCAGATGCCTGCTAACCCTCTGGTGGC 11194 Query 4191 TTTCAGCCC 4199 ||||| ||| Sbjct 11195 TTTCACCCC 11203 >seq93414 Length=10396 Score = 127 bits (140), Expect = 6e-26 Identities = 224/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 1338 ACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACC 1397 || ||||| || ||||||||||| ||| | || || | | | ||||| | || |||||| Sbjct 1407 ACAAACATTGCAGAAGCCATCGCACACACTGTACCTTCCCATGGCTGTATGAATTGGACC 1466 Query 1398 AATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGC 1457 ||||| ||| |||||||| | || || || || | ||| | ||| ||| ||| || | | Sbjct 1467 AATGA-AACCTTCCCTTCCATGACTGTGTAGATGAAATGATCATCCGGTAGGAAGAAGAC 1525 Query 1458 AAGATGACGGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGC 1517 | ||||| || || || |||| | | || | |||||| | ||| || || || Sbjct 1526 ACAATGACTGCTAAAATCATGGAAATGACTAAAGTCATTCTCAGTGGAGCTAAAGTTCGT 1585 Query 1518 GTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCC 1577 ||||| || || |||||||| || | || | || | || || ||||| |||| || Sbjct 1586 GTGGATCATAAATGCAAGTCCTCTGTTCAACTGGAGTCTACACCAGTGATTATCACTTCT 1645 Query 1578 AACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCG 1637 |||| |||||||| ||| || ||||| | ||| || || || | |||||| | Sbjct 1646 AACA-GGACATGTGCCGTGTGGAGGATGGGAATACCACGACATTTGAATACAAGCAGCTG 1704 Query 1638 CTGCAGGACCGGATGTTTGAATTT 1661 || | ||| | |||||| ||||| Sbjct 1705 TTGGAAGACTGCATGTTTAAATTT 1728 >seq111540 Length=9601 Score = 84.2 bits (92), Expect = 7e-13 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 3031 TACAGCACCCCT-TGGGGGTATTTTGACTTTAACAGATTCCACTGCCACTTCTCACCACG 3089 || ||||| || ||||| ||| |||| || |||||||| | |||| || | Sbjct 9097 TATAGCACAACTCTGGGGATATATTGATTTCAACAGATTATAGCATCACTGGAGTCCTAG 9038 Query 3090 TGACTGGCAGCGACTCATTAACAACAACTGGGGATTCCGGCCCAAGAAACTCAGCTTCAA 3149 |||||||| ||||||| |||| | ||||||| || | ||||| ||||| |||| Sbjct 9037 AGACTGGCAAAGACTCATCAACAGCTGCTGGGGACTCAGACCCAAATCCCTCAGTGTCAA 8978 Query 3150 GCTCTTCAACATCCAAGTTAGAGGGGTCACGCAGAACGATGGCACGACGACTATTGCCAA 3209 | ||||||||||||| | | || || | | | | ||||||| | ||| | ||| || Sbjct 8977 GGTCTTCAACATCCATATCAAAGAAGTTATGGAATAAAATGGCACAATGACCACTGCAAA 8918 Query 3210 TAACCTTACCAGCACGGTTCAAGTGTTT 3237 ||||| || ||| | ||||||||| Sbjct 8917 CAACCTGACATCCACTATCCAAGTGTTT 8890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14965604019465