Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq23094 221 4e-54 >seq23094 Length=55390 Score = 221 bits (244), Expect = 4e-54 Identities = 341/485 (70%), Gaps = 12/485 (2%) Strand=Plus/Plus Query 2845 CACCCGCCTCTAGTGTGGGATCATCTATCATGGCTGAAGGAGGTGGCGGCCCAGTGGGCG 2904 || || || ||| | ||||||| ||||||||| ||||||||||| | ||| ||||| Sbjct 39610 CAGCCCCCACTAATTTGGGATCTGGTATCATGGCAGAAGGAGGTGGAGTACCAATGGGCA 39669 Query 2905 ATGCAGGCCAGGGTGCCGATGGAGTGGGCAATTCCTCCGGAAATTGGCATTGCGATTCCC 2964 || |||||||| ||| |||| || ||||| | ||||||| |||||| | ||| | Sbjct 39670 ATAATCAACAGGGTGCTGATAGAGTAGGTAATTCTTTGGGAAATTAGCATTGTGGTTCTC 39729 Query 2965 AATGGCTGGAAAACGGAGTCGTCACTCGAACCACCCGAACCTGGGTCTTGCCCAGCTACA 3024 ||||| ||| || ||||| ||| |||| | | |||||||| ||| | || || Sbjct 39730 AATGGATGGGCCACAGAGTCACCACCCGAAAAGCTCT---CTGGGTCTCGCCTACCTGCA 39786 Query 3025 ACAACCACCTGTACAAACGAATCCAAGGAC--CCAGCGGAGGCNNNNNNNNNNNNNNATT 3082 |||||||||| ||||| | || || | ||| | |||| | Sbjct 39787 ACAACCACCTCTACAAGCAGTTCAAAATAGTGCCACCACAGGCAGTGCCAACAAC---TA 39843 Query 3083 CTTTGGATTCAGCACCCCCTGGGGATACTTTGACTACAATCGATTCCACTGCCACTTTTC 3142 |||||| |||||| |||||||||| | ||||||| ||| |||||||||||||||| Sbjct 39844 CTTTGGCTTCAGCTCCCCCTGGGGGAATTTTGACTTCAACAGATTCCACTGCCACTTCAG 39903 Query 3143 CCCGCGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGTCCCAAAGCGATGCG 3202 ||| ||||||||||| |||| ||||| ||||||||||| | || || ||| ||| Sbjct 39904 CCCCTGAGACTGGCAAAGACTTATCAATAACAACTGGGGACTGCGACCTAAAAACCTGCA 39963 Query 3203 CTTTAGACTCTTTAACATCCAGGTTAAAGAGGTCAC--GGTCCAAGACTTCAACACCACC 3260 ||| | |||||| |||||||| || || || ||||| || || || || ||||| Sbjct 39964 CTTCAAACTCTTCAACATCCAAGTCAAGGAAGTCACAAGGAGGAA-TGTTGAA-ACCACA 40021 Query 3261 ATCGGCAACAACCTCACCAGTACGGTCCAGGTCTTTGCGGACAAGGACTACCAACTGCCG 3320 || | || ||||| ||||| | | | || |||||||||||| || | ||||| || Sbjct 40022 ATTGCTAATAACCTTACCAGCATGATTCAAGTCTTTGCGGACTCAGAGTGTCAACTCCCA 40081 Query 3321 TACGT 3325 || || Sbjct 40082 TATGT 40086 Score = 212 bits (234), Expect = 2e-51 Identities = 327/464 (70%), Gaps = 2/464 (0%) Strand=Plus/Plus Query 1190 TGGTCGGGTGGTGCCAGAAGA-AATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACAT 1248 |||| || ||| ||||||| | ||| ||||| ||||||| | ||| | | ||| | Sbjct 38281 TGGTAGGCTGG-GCCAGAAAAGAATTTGGCAAAAGAAACACCATCTGGGTCTATGGAAAG 38339 Query 1249 GCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGA 1308 || || || || || || ||||| | ||| || |||| || | ||||| ||||| || Sbjct 38340 GCCACTACTGGGAACACTAACATTGTGGAAGCCGTTGCACACACGGTGCCCTTCTACGGG 38399 Query 1309 TGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATC 1368 | || || ||||| || ||||||||||| |||| || || || || |||||| | ||| Sbjct 38400 TATGTGAATTGGACTAATGAGAACTTTCCATTCAGTGATTGTGTGGATAAAATGCTCATC 38459 Query 1369 TGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGA 1428 ||||||||||| ||||| || ||| | | ||||| || ||||| || || || || ||| Sbjct 38460 TGGTGGGAGGAAGGCAAGATTACCTCTATGGTGGTTGAGACAGCTAAAGCCATCCTTGGA 38519 Query 1429 GGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCG 1488 ||| || || |||||||| |||| || | || |||| || || || || Sbjct 38520 GGAGCTAAAGTTCAGGTGGACCAGGAATGTAAGTCCTCTGTTCAAATTGATTGTACTCCA 38579 Query 1489 GTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTC 1548 ||||| || ||| |||||||||||||| || | | || ||||||| | | || Sbjct 38580 GTCATCATCACCTCCAACACCAACATGTGCTACATGGTGGATCGGAACACTATGATCTTT 38639 Query 1549 GAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGACTCGGTTGCCT 1608 |||||||||||| ||| | ||| |||||| | || | || | | ||| Sbjct 38640 GAGCATAAGCAGTTGTTACAAGACCACATGTTTCAATTCATGCTCGTGGAGAGACTTCCT 38699 Query 1609 GATGACTTTGGTAAGGTGACCAAACAGGAGGTGCGTCAATTCTT 1652 ||||||||||| |||||||| || ||||||||||||| ||||| Sbjct 38700 GATGACTTTGGCAAGGTGACAAAGGAGGAGGTGCGTCAGTTCTT 38743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14863515055785