Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq23094 226 8e-56 seq93414 141 3e-30 seq67558 123 7e-25 seq71896 118 3e-23 >seq23094 Length=55390 Score = 226 bits (250), Expect = 8e-56 Identities = 491/739 (66%), Gaps = 29/739 (4%) Strand=Plus/Plus Query 1020 AGAAATACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGT 1079 ||| |||||||| ||| |||| ||||| ||||| ||| ||| || || ||||||| Sbjct 38016 AGAGATACATGGAGCTTGTAAATTGGCTTGTGGA-----GCAGCACCTCTGAAAAGCAGT 38070 Query 1080 GGATTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAACTCTCGGAGCC 1139 ||||| || |||||||| || || || | | | ||||| | || | || Sbjct 38071 GGATTATTGAAAATCAGGAAAGTTATCTCTGTCACCAATCCACTAGCAATGCAGCCAGGA 38130 Query 1140 AGATTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAG 1199 ||||||||| || || ||||| || || |||||||||| |||||||||| ||| | Sbjct 38131 AGATTAAAGTTGCTCTGGACAATGCTTCTAAAATTATGAATCTGACCAAAAATGCAGATG 38190 Query 1200 ACTATCTCGTGG-GACAGACTGTTCCAG-----AGGACATTTCTGAAAACAGAATCTGGC 1253 | || || | || ||| | | ||| | ||||| |||||||| | Sbjct 38191 ATTACCTTATCCCGAAAGAATTTGTCAGTTTTGACAACATT-----AAACAGAACCAT-- 38243 Query 1254 AGATTTTTGATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGT 1313 | | || ||||| | | | | ||||| | ||| | || |||||| Sbjct 38244 ATCTATTGGATCTTTAAGAAT--------GGATACG---GATCTATCCTGGTAGGCTGGG 38292 Query 1314 GCACTCGCGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAA 1373 || | ||||| || || |||||| ||||| | |||||| || || || || | Sbjct 38293 CCAGAAAAGAATTTGGCAAAAGAAACACCATCTGGGTCTATGGAAAGGCCACTACTGGGA 38352 Query 1374 AGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGA 1433 | || ||||| | ||||||| | | ||||| |||||||| || || | |||||| |||| Sbjct 38353 ACACTAACATTGTGGAAGCCGTTGCACACACGGTGCCCTTCTACGGGTATGTGAATTGGA 38412 Query 1434 CTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGG 1493 ||||||||||||| || |||||| | |||||||||||||| | Sbjct 38413 CTAATGAGAACTTTCCATTCAGTGATTGTGTGGATAAAATGCTCATCTGGTGGGAGGAAG 38472 Query 1494 GAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTAC 1553 | ||||| ||| | |||||| || | || || |||||| | || || ||| ||| | Sbjct 38473 GCAAGATTACCTCTATGGTGGTTGAGACAGCTAAAGCCATCCTTGGAGGAGCTAAAGTTC 38532 Query 1554 GAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCT 1613 ||||| || ||||||| |||||||| ||| | || | ||| || || || ||||||| Sbjct 38533 AGGTGGACCAGGAATGTAAGTCCTCTGTTCAAATTGATTGTACTCCAGTCATCATCACCT 38592 Query 1614 CCAATACTAACATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGC 1673 |||| || |||||||| |||||||| ||||| | | || |||||| || ||||| Sbjct 38593 CCAACACCAACATGTGCTACATGGTGGATCGGAACACTATGATCTTTGAGCATAAGCAGT 38652 Query 1674 CGCTGGAAGACCGCATGTTCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCA 1733 | | |||||| |||||| ||| ||| || | | || || || ||||||| Sbjct 38653 TGTTACAAGACCACATGTTTCAATTCATGCTCGTGGAGAGACTTCCTGATGACTTTGGCA 38712 Query 1734 AGATTACCAAGCAGGAAGT 1752 || | || ||| |||| || Sbjct 38713 AGGTGACAAAGGAGGAGGT 38731 Score = 172 bits (190), Expect = 2e-39 Identities = 340/495 (69%), Gaps = 25/495 (5%) Strand=Plus/Plus Query 2848 ACAAGGTGCCGAGGGAGTGGGTAATGCCTCCGGTGATTGGCATTGCGATTC-CACTTGGT 2906 ||| ||||| || |||| |||||| | | || ||| |||||| | ||| || | | | Sbjct 39677 ACAGGGTGCTGATAGAGTAGGTAATTCTTTGGGAAATTAGCATTGTGGTTCTCAATGGAT 39736 Query 2907 CAGAGAGCCAC---GTCACCACCACCTCAACCCGCACCTGGGTCCTGCCGACCTACAACA 2963 | ||||| ||||||||| | || | | | |||||| ||| |||| ||||| Sbjct 39737 ----GGGCCACAGAGTCACCACC--CGAAAAGCTCTC-TGGGTCTCGCCTACCTGCAACA 39789 Query 2964 ACCACCTGTACCTGCGGCTCGGC-TCGAGCAACGCCAG-------CGACACCTTCAACGG 3015 ||||||| ||| || | || | | || || ||| | ||| || | || Sbjct 39790 ACCACCTCTACAAGCAGTTCAAAATAGTGCCACCACAGGCAGTGCCAACAACTACTTTGG 39849 Query 3016 ATTCTCCACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGCCAAG 3075 ||| | |||||||||| | |||||||| ||| | ||||||||||||||| || | Sbjct 39850 CTTCAGCTCCCCCTGGGGGAATTTTGACTTCAACAGATTCCACTGCCACTTCAGCCCCTG 39909 Query 3076 AGACTGGCAAAGGCTCATCAACAACCACTGGGGACTGCGCCCCAAAAGCATGCAAGTCCG 3135 |||||||||||| || ||||| ||| ||||||||||||| || |||| | |||| || Sbjct 39910 AGACTGGCAAAGACTTATCAATAACAACTGGGGACTGCGACCTAAAAACCTGCACTTCAA 39969 Query 3136 CATCTTCAACATCCAAGTTAAGGAGGTCACGACGTCTAACGGGGAGACGACCGTATCCAA 3195 |||||||||||||||| ||||| ||||| | | || | || || || | | || Sbjct 39970 ACTCTTCAACATCCAAGTCAAGGAAGTCACAAGGAGGAATGTTGAAACCACAATTGCTAA 40029 Query 3196 CAACCTCACCAGCACGGTCCAGATCTTTGCGGACAGCACGTACGAGCTCCCGTACGTGAT 3255 ||||| ||||||| | | || ||||||||||| || | ||||| || ||||| Sbjct 40030 TAACCTTACCAGCATGATTCAAGTCTTTGCGGACTCAGAGTGTCAACTCCCATATGTGAT 40089 Query 3256 --GGA-TGCAGGTCAGGAGGGCAGCTTGCCTCCTTTCCCCAACGACGTGTTCATGGTGCC 3312 ||| ||| ||| ||| | || | | || ||||| || ||||| ||| |||| Sbjct 40090 CAGGAGTGC---TCAAGAGAGGTGCCTACTCCCCTTCCCTCCTGATGTGTTTATGTTGCC 40146 Query 3313 TCAGTACGGGTACTG 3327 |||||| || || || Sbjct 40147 TCAGTATGGATATTG 40161 Score = 167 bits (184), Expect = 7e-38 Identities = 222/306 (73%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 4022 CCGGGAATGGTGTGGCAGGACAGAGACATTTACTACCAAGGGCCCATTTGGGCCAAAATT 4081 || |||||||| |||||| | |||||||| | ||| || ||||||||||| || ||| Sbjct 40856 CCTGGAATGGTCTGGCAGAAAAGAGACATCAATCTCCATGGTCCCATTTGGGCTAAGATT 40915 Query 4082 CCACACACGGATGGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAAAAGC 4141 || ||||| ||||| |||| || || |||||||| || || || ||||| || ||| Sbjct 40916 CCTCACACAGATGGTTACTTCCATCCCTCTCCTCTTATGGGTGGCTTTGGTCTCAAACAA 40975 Query 4142 CCGCCTCCACA-AATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGACCTT 4200 | ||||| || |||| | || |||||| ||||||| || || || ||| | || | ||| Sbjct 40976 TCTCCTCCTCAGAATA-TGATTAAAAACTCTCCTGTCCCTGCTAACCCCACCACCATCTT 41034 Query 4201 CTCTCCGGCCAGAATCAACAGCTTCATCACCCAGTACAGCACCGGACAGGTGGCTGTCAA 4260 | ||| | || | ||| || ||||| || ||| | || || ||| |||| | Sbjct 41035 CACTCTTGTCAAACAAAACTCTTTTATCACTCAATACTCTATTGGTCAAGTGACTGTAGA 41094 Query 4261 AATAGAATGGGAAATCCAGAAGGAGCGGTCCAAGAGATGGAACCCAGAGGTCCAGTTCAC 4320 ||| ||||||||| |||| ||||| | ||||||| ||||| || || |||| || || Sbjct 41095 AATTGAATGGGAACTCCATAAGGAAAGTTCCAAGAAATGGACTCCTGAAATCCATTTTAC 41154 Query 4321 GTCCAA 4326 ||||| Sbjct 41155 TTCCAA 41160 >seq93414 Length=10396 Score = 141 bits (156), Expect = 3e-30 Identities = 230/335 (69%), Gaps = 2/335 (1%) Strand=Plus/Plus Query 1374 AGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGA 1433 |||| ||||| || ||||||||| | ||||| || || | |||||||| |||| |||| Sbjct 1405 AGACAAACATTGCAGAAGCCATCGCACACACTGTACCTTCCCATGGCTGTATGAATTGGA 1464 Query 1434 CTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGG 1493 | ||||| ||| | || ||||| | ||| ||| ||| || | Sbjct 1465 CCAATGA-AACCTTCCCTTCCATGACTGTGTAGATGAAATGATCATCCGGTAGGAAGAAG 1523 Query 1494 GAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTAC 1553 | ||||| || | ||||| | || | ||| | | || ||| ||| | Sbjct 1524 ACACAATGACTGCTAAAATCATGGAAATGACTAAAGTCATTCTCAGTGGAGCTAAAGTTC 1583 Query 1554 GAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGACTCTACCCCGGTGATTATCACCT 1613 | |||||||| ||||| || |||||||| ||| | || ||||| || ||||||||||| | Sbjct 1584 GTGTGGATCATAAATGCAAGTCCTCTGTTCAACTGGAGTCTACACCAGTGATTATCACTT 1643 Query 1614 CCAATACTAACATGTGTGTGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGC 1673 | || | ||||||| |||| ||||||||| ||||||| |||||| || |||||| Sbjct 1644 CTAACA-GGACATGTGCCGTGTGGAGGATGGGAATACCACGACATTTGAATACAAGCAGC 1702 Query 1674 CGCTGGAAGACCGCATGTTCAGATTTGAACTCATG 1708 | |||||||| ||||||| | |||| |||||| Sbjct 1703 TGTTGGAAGACTGCATGTTTAAATTTCTTCTCATG 1737 >seq67558 Length=25472 Score = 123 bits (136), Expect = 7e-25 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 4022 CCGGGAATGGTGTGGCAGGACAGAGACATTTA-CTACCAAGGGCCCATTTGGGCCAAAAT 4080 || |||||||| ||| ||||||||||||| || |||| |||| | || | |||||| || Sbjct 10648 CCTGGAATGGTCTGGTAGGACAGAGACATCTATCTAC-AAGGTCTGATGTAGGCCAAGAT 10590 Query 4081 TCCACACACGGATGGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAAAAG 4140 ||| || | ||||||||||| ||| || ||||| | || || ||||||||||||| Sbjct 10589 TCCTCATGCTGATGGACACTTCCACAATTCACCTCTGCTGGGTGGTTTTGGACTGAAAAA 10530 Query 4141 CCCGCCTCCACAAATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGACCTT 4200 || ||||| || | | ||||| ||||||||| | || || || | || | | || Sbjct 10529 TCCTCCTCCTCAGAACATGATCAAGAACACTCCTATGCCTGCTAACTCTCCAGTGGCTTT 10470 Query 4201 CTCTCCGGCCAGAATCAACAGCTTCATCACCCAGTACAGCACCGGACAGGTGGCT 4255 | ||| || || | ||| ||||||||||||||| || || || ||| || Sbjct 10469 CACTCTGGTCAAACAGAACTCTTTCATCACCCAGTACTCAACTGGTCAAGTGACT 10415 >seq71896 Length=30598 Score = 118 bits (130), Expect = 3e-23 Identities = 208/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 4026 GAATGGTGTGGCAGGACAGAGACATTTACTACCAAGGGCCCATTTGGGCCAAAATTCCAC 4085 ||||||| ||| | |||||||| | ||| ||| || || ||||| || || || | Sbjct 11023 GAATGGTCTGGGATGACAGAGATGTCTACCTGCAAAAACCTATCTGGGCTAAGATCCCTC 11082 Query 4086 ACACGGATGGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAAAAGCCCGC 4145 ||| ||| ||||||| ||||| || |||||||| || |||||| |||||||| | | Sbjct 11083 ACATTGATAGACACTTCCACCCTTCGCCTCTCATGGGTGGATTTTTACTGAAAAAGCTTC 11142 Query 4146 CTCCACAAATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGACCTTCTCTC 4205 ||| || || | ||||| ||||| | | || || || || | | ||| | | Sbjct 11143 CTCTTCAGATCATGATCAAGAACACCCAGATGCCTGCTAACCCTCTGGTGGCTTTCACCC 11202 Query 4206 CGGCCAGAATCAACAGCTTCATCACCCAGTACAGCACCGGACAGGTGGCTGTCAAAATAG 4265 | |||| ||| ||||||||| ||||| || | || ||| || || || | Sbjct 11203 CCATCAGACAAAACTCTTTCATCACCAAGTACTCTACTAGTCAATTGGTGGTAAAGATTG 11262 Query 4266 AATGGGAAATCCAGAAGGAGCGGTCCAAGAGATGGAACCCAGAGGTCCAGTTCACGTCCA 4325 |||| ||| ||||||||||| ||||||| ||||| || || ||| ||| || |||| Sbjct 11263 AATGAGAACTCCAGAAGGAGTCTTCCAAGAAGTGGAATCCTGAAGTCTAGTCTACTTCCA 11322 Query 4326 ACT 4328 || Sbjct 11323 GCT 11325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14860324775670