Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq23094 212 2e-51 seq67558 86.0 2e-13 >seq23094 Length=55390 Score = 212 bits (234), Expect = 2e-51 Identities = 365/514 (71%), Gaps = 26/514 (5%) Strand=Plus/Plus Query 2831 CCCTGGGGGTACTTTGACTTCAATCGATTCCATTGCCACTTCTCCCCCCGAGACTGGCAA 2890 ||||||||| | ||||||||||| ||||||| ||||||||| |||| ||||||||||| Sbjct 39860 CCCTGGGGGAATTTTGACTTCAACAGATTCCACTGCCACTTCAGCCCCTGAGACTGGCAA 39919 Query 2891 AGACTCATCAACAACCACACAGGCATCAGGCCGAAAGGACTCAAAATCAAAGTCTTTAAC 2950 ||||| ||||| ||| || || | | || ||| || | ||||| |||| ||| Sbjct 39920 AGACTTATCAATAACAACTGGGGACTGCGACCTAAAAACCTGCACTTCAAACTCTTCAAC 39979 Query 2951 GTCCAAGTCAAAGAAGTTACAA--CACAAGATTCAACGAAAACAATTGCCAACAATCTCA 3008 |||||||||| ||||| |||| || || || | |||||||| || || || | Sbjct 39980 ATCCAAGTCAAGGAAGTCACAAGGAGGAATGTTGAA--ACCACAATTGCTAATAACCTTA 40037 Query 3009 CCAGCACCGTACAGATCTTTGCGGAC-GAGAACTACGACTTACCATATGT-ATTAGGCAG 3066 |||||| | || ||||||||||| ||| | || | |||||||| || ||| || Sbjct 40038 CCAGCATGATTCAAGTCTTTGCGGACTCAGAGTGTCAAC-TCCCATATGTGATCAGG-AG 40095 Query 3067 TGCTACACA-AGGCACATTTCCTCCATTTCCC-AATGATGTATTTATGTTACCACAATAT 3124 |||| | | ||| | | |||| ||||| |||||| |||||||| || || ||| Sbjct 40096 TGCTCAAGAGAGGTGC--CTACTCCCCTTCCCTCCTGATGTGTTTATGTTGCCTCAGTAT 40153 Query 3125 GCTTATTGTACACTTCAAGGA-AATTCGGGGAAATTTGTAGATAGAAGTGCCTTTTATTG 3183 | |||||| |||| ||| ||| |||||| | |||| || || || || || | Sbjct 40154 GGATATTGT--ACTT--TGGACAATGATGGGAAAAGTTTAGAGAGGAGCGCATTCTACTT 40209 Query 3184 TTTAGAATATTTTCCTTCACAAATGCTGAGAACAGGAAACAATTTTGAGTTCCAGTTTAA 3243 | ||||| |||||||| ||||| |||||| || ||||| |||| || | | Sbjct 40210 TCTAGAACATTTTCCTAACCAAATATTGAGAATGGGTAACAACTTTGCATTTTCCTATGC 40269 Query 3244 ATTTGAAGAAGTTCCCTTTCAT----TCTGGATGGGCACAGAGTCAAAGCCTAGACAGAT 3299 |||||| || ||||||||| | ||||| ||| | ||| ||| | || |||| Sbjct 40270 TTTTGAATCTGTCCCCTTTCATAGCATGTGGAT----ACATAATCAGAGCTTGGATAGAT 40325 Query 3300 TGATGAATCCGTTGCTTGATCAATATCTG-ATAG 3332 |||||||||| ||| |||||||||||||| |||| Sbjct 40326 TGATGAATCCATTGATTGATCAATATCTGTATAG 40359 Score = 141 bits (156), Expect = 3e-30 Identities = 218/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 3791 ATGCCAGGTATGGTGTGGTCTAATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAA 3850 ||||| || ||||| ||| || |||||||| | | || || || ||||||||||| Sbjct 40853 ATGCCTGGAATGGTCTGGCAGAAAAGAGACATCAATCTCCATGGTCCCATTTGGGCTAAG 40912 Query 3851 ATTCCAAATACAGATGGACATTTTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAA 3910 ||||| | |||||||| | || ||||| ||||| |||||||| ||||| | ||| Sbjct 40913 ATTCCTCACACAGATGGTTACTTCCATCCCTCTCCTCTTATGGGTGGCTTTGGTCTCAAA 40972 Query 3911 CATCCTCCGCCTATGATTCTGATCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACC 3970 || |||| ||| || | |||| ||||| | || || |||||| | || | || | | Sbjct 40973 CAATCTCCTCCTCAGAATATGATTAAAAACTCTCCTGTCCCTGCTAACCCCACCACCATC 41032 Query 3971 TTCAATCCAATGCCACAGACTAGTTTCATTACTGAATACAGTACAGGACAAGTAACTGTT 4030 |||| || | ||| | ||| || ||| ||||| || || ||||| ||||| Sbjct 41033 TTCACTCTTGTCAAACAAAACTCTTTTATCACTCAATACTCTATTGGTCAAGTGACTGTA 41092 Query 4031 GAAATGTTGTGGGAGGTACAGAAAGAATCCTCCAAAAGATGGAATCCAGAAGTACAGTTT 4090 ||||| ||||| | || || ||| ||||| | ||||| ||| ||| | || ||| Sbjct 41093 GAAATTGAATGGGAACTCCATAAGGAAAGTTCCAAGAAATGGACTCCTGAAATCCATTTT 41152 Query 4091 ACTTCCAATTT 4101 ||||||||||| Sbjct 41153 ACTTCCAATTT 41163 Score = 116 bits (128), Expect = 1e-22 Identities = 173/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 1257 GGCTGGACCTGCAAGAACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACT 1316 |||||| || | || | |||||||| ||||||||||||||| | ||||| || ||| Sbjct 38286 GGCTGGGCCAGAAAAGAATTTGGCAAAAGAAACACCATCTGGGTCTATGGAAAGGCCACT 38345 Query 1317 ACCGGCAAAACCATCATCGCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGT--G 1374 || || || || | ||| | |||| ||||||| | || || | | | ||| | Sbjct 38346 ACTGGGAACACTAACATTGTGGAAGCCGTTGCACACACGGTGCC-CT-TCTACGGGTATG 38403 Query 1375 TTAATTGGACTAATGAAAACTTTCCCTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGT 1434 | |||||||||||||| |||||||| ||| || | ||| | ||| |||| ||||||| Sbjct 38404 TGAATTGGACTAATGAGAACTTTCCATTCAGTGATTGTGTGGATAAAATGCTCATCTGGT 38463 Query 1435 GGGAGGAGGGCAAGATGACAAACAAAATGGTGGAGACGGCTAAATGTATACTGGGGGGAT 1494 ||||||| |||||||| || | |||| ||||| |||||| || || || ||| Sbjct 38464 GGGAGGAAGGCAAGATTACCTCTATGGTGGTTGAGACAGCTAAAGCCATCCTTGGAGGAG 38523 Query 1495 CT 1496 || Sbjct 38524 CT 38525 >seq67558 Length=25472 Score = 86.0 bits (94), Expect = 2e-13 Identities = 169/249 (68%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 3791 ATGCCAGGTATGGTGTGGTCTAATAGAGACATTTACTTACAGGGGCCTATTTGGGCTAAA 3850 ||||| || ||||| |||| | |||||||| || |||| || | || | ||| || Sbjct 10651 ATGCCTGGAATGGTCTGGTAGGACAGAGACATCTATCTACAAGGTCTGATGTAGGCCAAG 10592 Query 3851 ATTCCAAATACAGATGGACATTTTCATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAA 3910 ||||| || | |||||||| || || ||| || |||||||||||||| | ||| Sbjct 10591 ATTCCTCATGCTGATGGACACTTCCACAATTCACCTCTGCTGGGTGGTTTTGGACTGAAA 10532 Query 3911 CATCCTCCGCCTATGATTCTGATCAAAAATACACCAGTTCCTGCTGATCCTCCAACTACC 3970 ||||||| ||| || ||||||| || || || | |||||| | ||||| | Sbjct 10531 AATCCTCCTCCTCAGAACATGATCAAGAACACTCCTATGCCTGCTAACTCTCCAGTGGCT 10472 Query 3971 TTCAATCCAATGCCACAGACTAGTTTCATTACTGAATACAGTACAGGACAAGTAACTGTT 4030 |||| || | ||||| |||||| || | ||| || || ||||| ||| || Sbjct 10471 TTCACTCTGGTCAAACAGAACTCTTTCATCACCCAGTACTCAACTGGTCAAGTGACT-TT 10413 Query 4031 GAAATGTTG 4039 || ||| || Sbjct 10412 GATATGATG 10404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14027661665655