Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq23094 271 2e-69 seq111540 78.8 3e-11 >seq23094 Length=55390 Score = 271 bits (300), Expect = 2e-69 Identities = 337/457 (74%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 2835 GCCCCCTCTAGTGTGGGATCATCTGTCATGGCTGAAGGAGGTGGCGGTCCAATGGGCGAT 2894 |||||| ||| | ||||||| | ||||||| ||||||||||| | ||||||||| || Sbjct 39612 GCCCCCACTAATTTGGGATCTGGTATCATGGCAGAAGGAGGTGGAGTACCAATGGGCAAT 39671 Query 2895 GCAGGCCAAGGTGCCGACGGAGTGGGCAATTCCTCGGGAAATTGGCATTGCGATTCCCAA 2954 || ||||| || |||| || ||||| | |||||||| |||||| | ||| ||| Sbjct 39672 AATCAACAGGGTGCTGATAGAGTAGGTAATTCTTTGGGAAATTAGCATTGTGGTTCTCAA 39731 Query 2955 TGGCTGGACAACGGAGTCGTTACCCGAACCACTCGAACCTGGGTCCTGCCCAGCTACAAC 3014 ||| ||| | || ||||| ||||||| ||| ||||||| ||| | || |||| Sbjct 39732 TGGATGGGCCACAGAGTCACCACCCGAAAAGCTCT---CTGGGTCTCGCCTACCTGCAAC 39788 Query 3015 AACCACTTGTACAAGCGGATCCAAGGACCGGGAGGAACCGACCCCAACAATAAATTCTTT 3074 |||||| | ||||||| | || || | | | | | | | ||| || | |||| Sbjct 39789 AACCACCTCTACAAGCAGTTCAAAATAGTGCCACCA-CAGGCAGTGCCAACAACTACTTT 39847 Query 3075 GGATTCAGCACCCCCTGGGGGTACTTTGACTACAACCGATTCCACTGCCACTTCTCCCCC 3134 || |||||| ||||||||||| | ||||||| |||| ||||||||||||||||| |||| Sbjct 39848 GGCTTCAGCTCCCCCTGGGGGAATTTTGACTTCAACAGATTCCACTGCCACTTCAGCCCC 39907 Query 3135 CGAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGACCCAAAGCGATGCGCTTT 3194 ||||||||||| |||| ||||| ||||||||||| | ||||| ||| ||| ||| Sbjct 39908 TGAGACTGGCAAAGACTTATCAATAACAACTGGGGACTGCGACCTAAAAACCTGCACTTC 39967 Query 3195 AGACTCTTTAACATCCAGGTTAAAGAAGTCACTGTCCAAGACT-CCAACACCACCATCGC 3253 | |||||| |||||||| || || |||||||| | || | | ||||| || || Sbjct 39968 AAACTCTTCAACATCCAAGTCAAGGAAGTCAC-AAGGAGGAATGTTGAAACCACAATTGC 40026 Query 3254 CAACAACCTCACCAGCACGGTCCAAGTCTTTGCGGAC 3290 || ||||| ||||||| | | ||||||||||||||| Sbjct 40027 TAATAACCTTACCAGCATGATTCAAGTCTTTGCGGAC 40063 Score = 212 bits (234), Expect = 2e-51 Identities = 327/464 (70%), Gaps = 2/464 (0%) Strand=Plus/Plus Query 1190 TGGTCGGGTGGTGCCAGAAGA-AATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCT 1248 |||| || ||| ||||||| | ||| ||||| ||||||| | ||| | | ||| Sbjct 38281 TGGTAGGCTGG-GCCAGAAAAGAATTTGGCAAAAGAAACACCATCTGGGTCTATGGAAAG 38339 Query 1249 GCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGA 1308 || || || || || || ||||| | ||| || |||| || | ||||| ||||| || Sbjct 38340 GCCACTACTGGGAACACTAACATTGTGGAAGCCGTTGCACACACGGTGCCCTTCTACGGG 38399 Query 1309 TGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATC 1368 | || || ||||| || ||||||||||| |||| || || || || || ||| | ||| Sbjct 38400 TATGTGAATTGGACTAATGAGAACTTTCCATTCAGTGATTGTGTGGATAAAATGCTCATC 38459 Query 1369 TGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGA 1428 |||||||| || ||||| || ||| | | |||||| || || |||||||| || || ||| Sbjct 38460 TGGTGGGAGGAAGGCAAGATTACCTCTATGGTGGTTGAGACAGCTAAAGCCATCCTTGGA 38519 Query 1429 GGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCG 1488 ||| || || |||||||| |||| || | || |||| || || || || Sbjct 38520 GGAGCTAAAGTTCAGGTGGACCAGGAATGTAAGTCCTCTGTTCAAATTGATTGTACTCCA 38579 Query 1489 GTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACGTTC 1548 ||||| || ||| |||||||||||||| || | | || ||||||| | | || Sbjct 38580 GTCATCATCACCTCCAACACCAACATGTGCTACATGGTGGATCGGAACACTATGATCTTT 38639 Query 1549 GAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTGTTGACTCGTTTACCC 1608 |||||||||||| ||| | ||| |||||| | || ||| || | | || Sbjct 38640 GAGCATAAGCAGTTGTTACAAGACCACATGTTTCAATTCATGCTCGTGGAGAGACTTCCT 38699 Query 1609 GATGACTTTGGTAAGGTGACCAAACAGGAGGTGCGTCAATTCTT 1652 ||||||||||| |||||||| || ||||||||||||| ||||| Sbjct 38700 GATGACTTTGGCAAGGTGACAAAGGAGGAGGTGCGTCAGTTCTT 38743 Score = 138 bits (152), Expect = 3e-29 Identities = 272/397 (69%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 4065 CCCGGGATGGTGTGGCAAAACAGAGACATTTACCTCCAAGGACCCATTTGGGCCAAAATC 4124 || || ||||| ||||| || |||||||| | ||||| || ||||||||||| || || Sbjct 40856 CCTGGAATGGTCTGGCAGAAAAGAGACATCAATCTCCATGGTCCCATTTGGGCTAAGATT 40915 Query 4125 CCCGACACAGACAATCACTTCCATCCGTCCCCGCTTATTGGCGGGTTTGGCTGCAAGCAT 4184 || ||||||| | |||||||||| || || ||||| || || ||||| ||| || Sbjct 40916 CCTCACACAGATGGTTACTTCCATCCCTCTCCTCTTATGGGTGGCTTTGGTCTCAAACAA 40975 Query 4185 CCCCCTCCCCAGATTTTCATTAAAAACACACCCGTCCCGGCCAACCCTTCGGAAACGTTC 4244 | ||||| |||| | | ||||||||| | || ||||| || ||||| | | ||| Sbjct 40976 TCTCCTCCTCAGAATATGATTAAAAACTCTCCTGTCCCTGCTAACCCCACCACCATCTTC 41035 Query 4245 CAGACGGCCAAGGTGGCCTCCTTCATCAACCAGTACTCGACCGGAC-AGTGCACCGTCGA 4303 | ||| ||| || |||| || ||||| | || | |||| || || || Sbjct 41036 ACTCTTGTCAAACAAAACTCTTTTATCACTCAATACTCTATTGGTCAAGTG-ACTGTAGA 41094 Query 4304 AATCTTTTGGGAACTCAAGAAGGAAACCTCCAAGCGCTGGAACCCCGAAATCCAGTTCAC 4363 ||| ||||||||| | ||||||| |||||| |||| || |||||||| || || Sbjct 41095 AATTGAATGGGAACTCCATAAGGAAAGTTCCAAGAAATGGACTCCTGAAATCCATTTTAC 41154 Query 4364 CTCCAACTTTGGCAACGCGGCCGACATCCAGTTTGCTGTCTCCGACACCGGA-TCCTATT 4422 ||||| || | ||| | ||| | |||||| || ||| | | ||| Sbjct 41155 TTCCAATTTCAGAAACACTATTGACTTATCTTTTGCT---CCCAACAATGAAGGTGTATA 41211 Query 4423 CCG--AACCTCGTCCCATCGGTACCCGGTACCTTACC 4457 | | ||||||||||||| |||||| | ||||||||| Sbjct 41212 CTGTAAACCTCGTCCCATTGGTACCTGATACCTTACC 41248 >seq111540 Length=9601 Score = 78.8 bits (86), Expect = 3e-11 Identities = 175/261 (67%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 3136 GAGACTGGCAACGACTCATCAACAACAACTGGGGCATCCGACCCAAAGCGATGCGCTTTA 3195 ||||||||||| |||||||||||| | |||||| || |||||||| | | | | | Sbjct 9038 GAGACTGGCAAAGACTCATCAACAGCTGCTGGGGACTCAGACCCAAATCCCTCAGTGTCA 8979 Query 3196 GACTCTTTAACATCCAGGTTAAAGAAGTCACTGTCCAAGACTCCAACACCACCATCGCCA 3255 |||| |||||||| | |||||||| | | || | || | |||| || | Sbjct 8978 AGGTCTTCAACATCCATATCAAAGAAGTTATGGAATAAAATGGCACAATGACCACTGCAA 8919 Query 3256 ACAACCTCACCAGCACGGTCCAAGTCTTTGCGGACAAGGACTACCAGCTGCCGTACGTCC 3315 ||||||| || ||| ||||||| ||||| || || || ||||| | || |||| Sbjct 8918 ACAACCTGACATCCACTATCCAAGTGTTTGCAGAGGAGAGCTGTCAGCTTTCTTATGTCC 8859 Query 3316 TCGGATCGGCTACAGAGGGCACCTTCCCGCCGTTCC--CAGCGGATATCTACACGATCCC 3373 | || ||||||| || |||| | | |||| || | | | | || | ||| Sbjct 8858 TAGGGAACACTACAGAAGGGTGCTTCTCCTCTTTCCTGCATCCG---TGTTCATGTTCCT 8802 Query 3374 GCAGTATGGTTACTGCACGCT 3394 ||| ||||| |||||||| || Sbjct 8801 GCAATATGGGTACTGCACTCT 8781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14825231694405