Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq23094 194 5e-46 seq71896 77.0 9e-11 >seq23094 Length=55390 Score = 194 bits (214), Expect = 5e-46 Identities = 366/536 (68%), Gaps = 12/536 (2%) Strand=Plus/Plus Query 2618 ATATGGCATCTGCTGAGGTGGCTGCGGGTGGTGGCGGACCAGTGGGCGACGATGCACAAG 2677 || ||| ||||| | |||| | || ||||| | |||| ||||| | || ||| | Sbjct 39622 ATTTGGGATCTGGTATCATGGCAGAAGGAGGTGGAGTACCAATGGGCAATAATCAACAGG 39681 Query 2678 GTGCCGATGGAGTGGGTAATGCCTCAGGAAATTGGCATTACGATTCCGTTTGGATGGACG 2737 |||| ||| |||| |||||| | | ||||||| ||||| | ||| ||||||| | Sbjct 39682 GTGCTGATAGAGTAGGTAATTCTTTGGGAAATTAGCATTGTGGTTCTCAATGGATGGGCC 39741 Query 2738 GCGCTGTCATCACCAAGTCCACCCGAAC-CTGGAGCCTGCCCGCCTACAACAACCACCTC 2796 | |||| |||| | | | | |||| | ||| ||| ||||||||||||| Sbjct 39742 ACAGAGTCACCACC----CGAAAAGCTCTCTGGGTCTCGCCTACCTGCAACAACCACCTC 39797 Query 2797 TACCGCCAGATCCAGTCCAGCGGCACCGGAGACGG------CACGTACTTTGGTTACAGC 2850 ||| ||| || | || | |||| || | | || |||||||| | |||| Sbjct 39798 TACAAGCAGTTCAAAAT-AGTGCCACCACAGGCAGTGCCAACAACTACTTTGGCTTCAGC 39856 Query 2851 ACGCCTTGGGGATACTTCGATTTCAATCGATTCCACTGCCACTTTTCTCCCAGGGACTGG 2910 | || ||||| | || || ||||| |||||||||||||||| ||| | |||||| Sbjct 39857 TCCCCCTGGGGGAATTTTGACTTCAACAGATTCCACTGCCACTTCAGCCCCTGAGACTGG 39916 Query 2911 CAGCGGCTCATCAACAACCACTGGGGCATCCGCCCCAAGCGGCTCCACTTTAAGCTCTTC 2970 || | || ||||| ||| ||||||| | || || || || ||||| || |||||| Sbjct 39917 CAAAGACTTATCAATAACAACTGGGGACTGCGACCTAAAAACCTGCACTTCAAACTCTTC 39976 Query 2971 AACATCCAGGTCAAGGAGGTCACGACGACCGACGGCACCACGACCATCGCCAACAACCTC 3030 |||||||| |||||||| ||||| | || | | || || || || || ||||| Sbjct 39977 AACATCCAAGTCAAGGAAGTCACAAGGAGGAATGTTGAAACCACAATTGCTAATAACCTT 40036 Query 3031 ACCAGCACCATACAGGTCTTTGCGGACACGGAGTACCAGCTCCCGTACGTGCTCGGCAAC 3090 ||||||| || || |||||||||||| | |||| || ||||| || ||| || | | Sbjct 40037 ACCAGCATGATTCAAGTCTTTGCGGACTCAGAGTGTCAACTCCCATATGTGATCAGGAGT 40096 Query 3091 GCCCACGAGGGCTGCCTGCCGCCGTTCCCGGCGGACGTCTTCATGCTGCCGCAGTA 3146 || || ||| | ||||| | || ||||| | || || || ||| |||| ||||| Sbjct 40097 GCTCAAGAGAGGTGCCTACTCCCCTTCCCTCCTGATGTGTTTATGTTGCCTCAGTA 40152 Score = 147 bits (162), Expect = 6e-32 Identities = 184/250 (74%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 1148 TTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTC 1207 || ||||| | |||||| ||||| ||| || |||||| || || || || ||| | Sbjct 38304 TTTGGCAAAAGAAACACCATCTGGGTCTATGGAAAGGCCACTACTGGGAACACTAACATT 38363 Query 1208 GCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAAC 1267 | || ||| | ||| |||||||||||||||| | || || ||||| || |||||| Sbjct 38364 GTGGAAGCCGTTGCACACACGGTGCCCTTCTACGGGTATGTGAATTGGACTAATGAGAAC 38423 Query 1268 TTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGACG 1327 || || |||| || || ||||| || ||| |||||||||||||||| |||||||| || Sbjct 38424 TTTCCATTCAGTGATTGTGTGGATAAAATGCTCATCTGGTGGGAGGAAGGCAAGATTACC 38483 Query 1328 TCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGC-AAGGTGCGCGTCGACCA 1386 || | ||| || |||| || || |||||||| || || ||| || || | || ||||| Sbjct 38484 TCTATGGTGGTTGAGACAGCTAAAGCCATCCTTGGAGG-AGCTAAAGTTCAGGTGGACCA 38542 Query 1387 GAAGTGCAAG 1396 | | || ||| Sbjct 38543 GGAATGTAAG 38552 Score = 96.9 bits (106), Expect = 9e-17 Identities = 214/320 (67%), Gaps = 1/320 (0%) Strand=Plus/Plus Query 3823 GTCTTCCCGGGCATGGTCTGGCAGGACCGCGACATCTACCTGCAGGGCCCGATATGGGCC 3882 ||| | || || |||||||||||| | | |||||| | || || || || || ||||| Sbjct 40850 GTCATGCCTGGAATGGTCTGGCAGAAAAGAGACATCAATCTCCATGGTCCCATTTGGGCT 40909 Query 3883 AAGATCCCGGAGACGGACGGCCACTTCCACCCGTCCCCGCTCATGGGCGGCTTCGGGCTC 3942 ||||| || | || || || ||||||| || || || || ||||| ||||| || ||| Sbjct 40910 AAGATTCCTCACACAGATGGTTACTTCCATCCCTCTCCTCTTATGGGTGGCTTTGGTCTC 40969 Query 3943 AAGAACCCGCCGCCGCAGATCCTCGTCAAGAACACGCCCGTGCCCGCCGTGCCGCCCACG 4002 || | | || || |||| | | || ||| | || || || || || |||| Sbjct 40970 AAACAATCTCCTCCTCAGAATATGATTAAAAACTCTCCTGTCCCTGCTAACCCCACCACC 41029 Query 4003 ACCTTCACACCGCAGAAGGTCAACTCCTTCATCACGCAGTACTCCACCGGCCAGGTCACC 4062 | |||||| | || ||||| || ||||| || ||||| | || || || || Sbjct 41030 ATCTTCACTCTTGTCAAACAAAACTCTTTTATCACTCAATACTCTATTGGTCAAGTGACT 41089 Query 4063 GTCGAGATCGAGTGGGAGCTGCGCAAGGAGAAGAGCAAGCGCTGGAACCCCGAGATCCAG 4122 || || || || ||||| || | ||||| | |||| |||| || || ||||| Sbjct 41090 GTAGAAATTGAATGGGAACTCCATAAGGAAAGTTCCAAGAAATGGACTCCTGAAATCCAT 41149 Query 4123 TACACCTCCAACTTCGAGAA 4142 | || ||||| ||| |||| Sbjct 41150 TTTACTTCCAATTTC-AGAA 41168 >seq71896 Length=30598 Score = 77.0 bits (84), Expect = 9e-11 Identities = 110/155 (71%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 3823 GTCTTCCCGGGCATGGTCTGGCAGGACCGCGACATCTACCTGCAGGGCCCGATATGGGCC 3882 ||||| || | ||||||||| | ||| | || |||||||||| || || ||||| Sbjct 11013 GTCTTACCTTGAATGGTCTGGGATGACAGAGATGTCTACCTGCAAAAACCTATCTGGGCT 11072 Query 3883 AAGATCCCGGAGACGGACGGCCACTTCCACCCGTCCCCGCTCATGGGCGGCTTCGGGCTC 3942 |||||||| | | || | ||||||||||| || || |||||||| || || || Sbjct 11073 AAGATCCCTCACATTGATAGACACTTCCACCCTTCGCCTCTCATGGGTGGATTTTTACTG 11132 Query 3943 AAGAACCCGCCGCCGCAGATCCTCGTCAAGAACAC 3977 || || | || | |||||| | |||||||||| Sbjct 11133 AAAAAGCTTCCTCTTCAGATCATGATCAAGAACAC 11167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13561880768865