Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq108040 311 3e-81 seq88340 199 1e-47 seq45063 172 2e-39 seq117373 163 9e-37 seq72496 122 3e-24 seq112444 107 6e-20 seq62551 102 2e-18 seq65558 98.7 3e-17 >seq108040 Length=26046 Score = 311 bits (344), Expect = 3e-81 Identities = 302/383 (79%), Gaps = 4/383 (1%) Strand=Plus/Plus Query 1148 CAATAATGTGCTGCCTTAA-CAAACAAATGGGCAAAAGAAATACCATCTTACTCTGTGGA 1206 |||||||||| || ||||| ||||||| | || |||||||| || || ||||||| ||| Sbjct 11757 CAATAATGTG-TGTCTTAAACAAACAACTTGGAAAAAGAAACACAATTTTACTCTCAGGA 11815 Query 1207 CCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAACACA 1266 || |||||||| ||||||||| || ||||||||||||| | || |||||||| Sbjct 11816 CCAGCAAGCACTGGAAAAAGCTTAATAGCTCAAAAAATCTGTGAGTTGGTTGGTAATGTC 11875 Query 1267 GGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAACAAAAACCTA 1326 || ||||||||||||||||||| ||||| ||||||||||||||| ||||| | Sbjct 11876 GGTTGCTACAATCCAAGCAATGTAAACTTTCCATTCAATGACTGTTGCTCTAAAAATATC 11935 Query 1327 ATCTGGATAGAAGAAGCAGGCAACCTAGG-CACTCAAGTTAACTCTTTCAAAGCCATCAT 1385 || ||||| ||||||||||| || ||||| ||| ||||| ||| ||||||||||| | Sbjct 11936 ATTTGGATTGAAGAAGCAGGAAATCTAGGACAC-CAAGTAAACCAATTCAAAGCCATTTT 11994 Query 1386 GAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAAC 1445 | || ||| | |||||| | ||||||||||| |||||||||||||| || |||||||| Sbjct 11995 GTCAGGACAATCTATCAGATTAGACCAAAAAGGAAAAGGCAGCAAATCTATAGAACCAAC 12054 Query 1446 TCCAGTAATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTGGCACAGAACTCAA 1505 |||||||| |||||| |||||||||| || || |||||| | | ||| ||||| | Sbjct 12055 ACCAGTAATAATGACATCCAATGAAGATATAACACAAGTAAGAATAGGCTGCGAACTAAG 12114 Query 1506 AACAGAACACAGACAACCAATAA 1528 | ||||||||| ||||||||| Sbjct 12115 ACCAGAACACACCGAACCAATAA 12137 Score = 77.0 bits (84), Expect = 1e-10 Identities = 196/289 (68%), Gaps = 17/289 (6%) Strand=Plus/Plus Query 2412 GCCTGGATACAACTACCTGGGACCCTTCAATCAAGACTTCAGCAA--AAAACCAACCAAT 2469 ||| || ||||| ||| ||||||| ||| | |||| | ||| | ||||||| || Sbjct 12721 GCCGGGCTACAAATACGTGGGACCAGGCAAC--ACACTTGACCAAGGAGAACCAACTAAC 12778 Query 2470 CCATCTGACAAAGCCGCAAGAAAACACGATTTGGAATACAACAAACTCATCAAACAAG-- 2527 | | ||| || || || | |||||||| || | || | ||||| |||||| Sbjct 12779 CAAAGTGATAAGGCTGCCAAGAAACACGACC---AACATTACCATCTCATACAACAAGCC 12835 Query 2528 -GACACAATCCTTACTGGAATTACAATCACGCCGACGAGGACTTT-ATCAAAGAAACTGA 2585 |||| ||||||||| | | || | || ||| |||||||| || ||||||| || Sbjct 12836 GGACATAATCCTTACCTATACTTTAACGAAGCAGAC-AGGACTTTTATTGAAGAAACAGA 12894 Query 2586 CCAAGCAACAGACTGGGGAGGAAAGTTTGGTAACTTTATCTTTCGCGCCAAAAA-AGCAC 2644 ||||||||||||||||||| ||| || ||| | ||||| | ||||| ||| Sbjct 12895 AAAAGCAACAGACTGGGGAGGTTGGTTAGGAAAC-AAAGCTTTCAAACTAAAAAGAGCCA 12953 Query 2645 TAGCTCCTGAACTGGCGCCTCCAACTAAAAAGAAGACAAAAACCAAACA 2693 | ||||| | |||| | | ||| ||||| || |||||||| || Sbjct 12954 TTGCTCCAAACCTGGAACATACAAGAAAAAAACAG---AAAACCAACCA 12999 >seq88340 Length=24873 Score = 199 bits (220), Expect = 1e-47 Identities = 242/329 (74%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 1146 TGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATCTTACTCTGTGG 1205 ||||||||||||| |||||||| || | || |||||||| || |||||| | || Sbjct 11243 TGCAATAATGTGCATACTTAACAAGCAGCTAGGTAAAAGAAACACAATCTTATTACAAGG 11184 Query 1206 ACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAACAC 1265 ||| | |||||||||||||| ||| | |||||||| ||| | ||||||||||| Sbjct 11183 ACCAGTGAGCACAGGAAAAAGTCTAATTGCTCAAAATATATGTGAGTTAGTTGGTAATGT 11124 Query 1266 AGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAACAAAAACCT 1325 || ||||||||| || ||||| ||||| || ||||| || || ||||||||| | Sbjct 11123 TGGATGCTACAATTCATCCAATGTAAACTTTCCTTTCAACGATTGCTGCAACAAAAACAT 11064 Query 1326 AATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTCAAAGCCATCAT 1385 || | ||| || |||||| | ||| | || ||||| ||| || ||||| || || Sbjct 11063 TATATCGATTGAGGAAGCAAGAAACTTGGGGCAGCAAGTAAACCAATTTAAAGCAATAAT 11004 Query 1386 GAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAAC 1445 | || ||| || ||| | |||||||||| || |||||||| || ||||||||| | Sbjct 11003 GTCAGGACAA--AACAAGATTATACCAAAAAGGAAAGGGCAGCAAGTCCATTGAACCACC 10946 Query 1446 TCCAGTAATCATGACAACCAATGAAGACA 1474 |||| |||| |||||| | ||||| |||| Sbjct 10945 TCCAATAATAATGACATCTAATGAGGACA 10917 >seq45063 Length=75060 Score = 172 bits (190), Expect = 2e-39 Identities = 247/343 (72%), Gaps = 10/343 (3%) Strand=Plus/Minus Query 1134 AAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCAT 1193 ||||||| |||| | ||||||| ||||||||||| | | ||||| || ||||| Sbjct 22239 AAAAGTCACACATGTCACAATGTGCCCAGTTAACAAACAATTTGCCAAAATAAGCACCAT 22180 Query 1194 CTTACTCTGT---GGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAA 1250 ||||| ||||||| | | ||||||||| || || | |||||||| | Sbjct 22179 ---ACTCTTACAAGGACCTGTTATTAGAGGAAAAAGTCTCATAACACAAAAAATTTGTGA 22123 Query 1251 ATTAGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTG 1310 ||||||||||| ||| || ||||||||| | ||| ||||| || |||||||| || Sbjct 22122 GTTAGTTGGTAATGTAGGATGTTACAATCCAT-CTATGTTAACTTTCCTTTCAATGATTG 22064 Query 1311 TGTAAACAAAAACCTAATCT--GGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAAC 1368 |||||||| || | | ||||||||||||| || ||| |||| ||||| ||| Sbjct 22063 CTGCAACAAAAAACTTCTATAGGGATAGAAGAAGCTGGTAACTTAGGACAGCAAGTAAAC 22004 Query 1369 TCTTTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGC 1428 || |||| |||||| || ||| |||||||| || |||||| ||||| | Sbjct 22003 CAATTTAAAGTAATCATGTCAGGACAAAGCATCAGACTAGATGAAAAAGA-AAAGGTAAT 21945 Query 1429 AAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAG 1471 ||||| ||||||||||||||| |||| |||||| ||||||||| Sbjct 21944 AAATCCATTGAACCAACTCCAATAATAATGACATCCAATGAAG 21902 >seq117373 Length=15221 Score = 163 bits (180), Expect = 9e-37 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 1144 CATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATCTTACTCTGT 1203 |||||||| ||||| |||| ||||||| | || |||||||||||||||||||| || Sbjct 12273 CATGCAATGATGTGTGTGCTTAGCAAACAACTTGGTAAAAGAAATACCATCTTACTAAGT 12332 Query 1204 GGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAAC 1263 | |||||| ||||| ||||||||| || ||||| |||||| | || |||||||| Sbjct 12333 GAACCTGCTAGCACTGGAAAAAGCTTAATAGCTTAAAAAACTTGTGACTTGGTTGGTAAT 12392 Query 1264 ACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAACAAAAAC 1323 || | ||||||||| |||| ||||| |||||||||||||| ||||||||| Sbjct 12393 GTTGGTTATTACAATCCATCAAATGTAAACTTTCCATTCAATGACTGCTGCAACAAAAAC 12452 Query 1324 CTAATCTGGATAGAAGAAGCAGGCAACCTA 1353 |||||||||||||| ||||| ||| || Sbjct 12453 ACTATCTGGATAGAAGAGGCAGGAAACTTA 12482 >seq72496 Length=32857 Score = 122 bits (134), Expect = 3e-24 Identities = 371/582 (64%), Gaps = 36/582 (6%) Strand=Plus/Plus Query 1121 ACATG-AATCCACAAAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGC 1179 ||||| || ||| | ||||| ||||||||||||||| || ||||| ||| | || Sbjct 17017 ACATGCAACCCATACAAAGTGATTCATGCAATAATGTGCGTGCTAAACAAGCAACTAGGT 17076 Query 1180 AAAAGAAATACCATCTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAA 1239 ||||||||||| ||| |||| ||| || |||||||| ||||||| Sbjct 17077 AAAAGAAATACAATCCTACTAAATGGGCCAGCAAGCACTGGAAAAANNNNNNNNNN---- 17132 Query 1240 AAAATAGCAAAATTAGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCA 1299 || || ||||||||| |||| || || || Sbjct 17133 ---------------------------GGATGTTACAATCCATCTAATGTGAATTTTTCA 17165 Query 1300 TTCAATGACTGTGTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACT 1359 || | |||||| || ||||| |||| || |||| | ||||| |||||||| Sbjct 17166 TTTA-TGACTGCTGCAATAAAAAGATAATATG---AGAACAGGCAGGTAACCTAGGTCAG 17221 Query 1360 CAAGTTAACTCTTTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGC 1419 ||||| ||| || ||| | || ||| || ||| || ||||| | ||||| || Sbjct 17222 CAAGTAAACCAATTTAAATCGATAATGTCAGGACAAAGCATAAGACTAGGTCAAAAGGGG 17281 Query 1420 AAAGGCAGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACC 1479 || ||||| ||| | ||||||||||| || || || |||||| ||| |||||||| || Sbjct 17282 AAGGGCAGTAAAACCATTGAACCAACACCTGTCATAATGACATCCAGTGAAGACACAACA 17341 Query 1480 AAAGTAATAGTTGGCACAGAACTCAAAACAGAACACAGACAACCAATAATGGATAGATGC 1539 ||||| | |||| || ||| | | |||| || | ||| ||||| | ||||| Sbjct 17342 GTAGTAAGAATTGGTTGTGAGATCAGACCTGAACTCACAGAACAAATAAGACACAGATGT 17401 Query 1540 TTAAGAATTGAACTCAAAAACAAACTAAGTGGTGATCATGGCTTGTTAGAAGATACTGAA 1599 | | || |||| | || | || |||| | |||| | | ||||| ||| Sbjct 17402 GTCAATATAAGACTCGACAAGACTTTAGATGGTTGGCTTGGCATAATCAAAGATCATGAG 17461 Query 1600 CTACCAGCTATCTTCAAATACCTAGAAGGACATGGATTTTATCCAACCATGTGGTCATAC 1659 ||||| || || ||| || |||| | | || | | ||||||||||| ||| ||| Sbjct 17462 ATACCAAACATATTAAAAACGCTTGAAGCAGAAGGCTATCATCCAACCATGATGTCTTAC 17521 Query 1660 ATGGACAGATGGGGAACCACGCCTACATGGGGCGAAAACTGG 1701 | || |||| |||||||| |||| ||||||||| Sbjct 17522 GTAGAGCACTGGGCTGACACGCCTAAATGGTCAGAAAACTGG 17563 >seq112444 Length=40188 Score = 107 bits (118), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 1361 AAGTTAACTCTTTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCA 1420 |||| ||| || ||||| || ||| || ||| || ||||| |||| |||||| | Sbjct 11179 AAGTAAACCAATTTAAAGCAATTATGTCAGGACAAAGCATTAGACTAGACCCAAAAGGGA 11238 Query 1421 AAGGCAGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCA 1480 ||||||||||||| ||||||||||||| |||||| |||||| | ||||||||||| || Sbjct 11239 AAGGCAGCAAATCTATTGAACCAACTCTAGTAATAATGACACCTAATGAAGACATAACTT 11298 Query 1481 AAGTAATAGTTGGCACAGAACTCAAAACAGAACACAGACAACCAATAATGGATAGATGCT 1540 | | | | ||| | || ||| |||| ||| | | ||||||| ||||||| Sbjct 11299 ATTTCAGAATTGACTGTGATATCAGGCCAGAGCACTG--AGCCAATAAAACATAGATGTG 11356 Query 1541 TAAGAATTGAACT--CAAAAAC 1560 | | ||| |||| ||||||| Sbjct 11357 TTAAAATCAAACTGACAAAAAC 11378 >seq62551 Length=99649 Score = 102 bits (112), Expect = 2e-18 Identities = 259/388 (67%), Gaps = 6/388 (2%) Strand=Plus/Plus Query 1155 GTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATCTTACTCTGTGGACCTGCAAG 1214 ||| ||||| |||||||||||||| | ||||||| |||||||| ||| || || Sbjct 51297 GTGTTGCCT-AACAAACAAATGGGTGAGAGAAATA-TATCTTACTTAATGGTCCAATAAA 51354 Query 1215 CACAGGAAAAAGCCTACTAGCTCAAAAAATAGC--AAAATTAGTTGGTAACACAGGCTGC 1272 ||| || ||| | |||| || || | | | ||||||||||| | || ||| Sbjct 51355 CACTGGCAAATCTCACATAGCACAGAATCTCTCTGCCACTTAGTTGGTAATATTGGTTGC 51414 Query 1273 TACAATCCAAGCAATGCCAAC-TTCCCATTCAATGACTGTGTAAACAAAAACCTAATCTG 1331 |||||| | ||| | | | || || |||||||||||| || |||| || | || Sbjct 51415 TACAATGC-AGCTAACATATCATTTCCTTTCAATGACTGTACCTGCAGAAACATAGTTTG 51473 Query 1332 GATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTCAAAGCCATCATGAGTGG 1391 | | || || |||| || ||||| ||| | | |||||| | ||| || Sbjct 51474 GGTTGAGGAGGCAGAAAATCTAGGATAGCAAATCGATCAATTCAAACAACTAATGCTAGG 51533 Query 1392 CCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGT 1451 || || | ||| | || |||||||| ||| | |||||| | || |||||||| | || Sbjct 51534 GCAGACAGTTAGAATAGATCAAAAAGGGAAAAGAAGCAAAACCATAGAACCAACACTTGT 51593 Query 1452 AATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTGGCACAGAACTCAAAACAGA 1511 |||||||| |||||||| |||| || |||| | | ||| | || | | | | || Sbjct 51594 AATCATGATCACCAATGAGAACATAACTGAAGTCAGAATTGACTGTGAGTTAAGATCTGA 51653 Query 1512 ACACAGACAACCAATAATGGATAGATGC 1539 ||| | | ||||| | | |||||||| Sbjct 51654 ACATACTGAGCCAATTAAGCATAGATGC 51681 >seq65558 Length=45570 Score = 98.7 bits (108), Expect = 3e-17 Identities = 249/370 (67%), Gaps = 29/370 (8%) Strand=Plus/Plus Query 1126 AATCCACAAAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGA 1185 ||| || | ||||| ||||| ||||| ||||| | |||| | |||| |||||| Sbjct 45221 AATTCATATAAAGTGGCTCATGCTATAATATGCTGATTGAACAGA----TGGGAAAAAGA 45276 Query 1186 AATACCATCTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATA 1245 |||||||||||||| ||| || | ||||| ||| | | |||| | || ||| Sbjct 45277 AATACCATCTTACTAAATGGGCCATCTCTTACAGGGAAATCCTTTATAGCCCCCAAGATA 45336 Query 1246 -GCAAAATTAGTTGGTAACACAGGCTGCTACAATCCAAGCAA--TGCCAACTTCCCATTC 1302 || | || ||||| || || ||||||| || | | || | || |||| |||| Sbjct 45337 TGCCAGCTT-GTTGGAAATGTTGGTTGCTACAGTCAAGGAAACATTTCA--TTCCTATTC 45393 Query 1303 AATGACTGTGTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAA 1362 | ||||| | | |||||| | || ||||||||| || || || | ||| Sbjct 45394 AGTGACTCTACTCATAAAAACAT-----GGGTAGAAGAAGTTGGAAATCTCAGATGGCAA 45448 Query 1363 GTTAACTCTTTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAA 1422 || ||| || ||| || | ||| || | || || || ||||||| ||| Sbjct 45449 GTAAACCAGTTAAAA--CAAC-TGA-TGTC--AGGAA--------GATCAAAAAGAAAAA 45494 Query 1423 GGCAGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCAAA 1482 ||| ||| ||||||||| ||||||||||||||||||||||||||| | || || || Sbjct 45495 GGCTCAAAAACAATTGAACTTACTCCAGTAATCATGACAACCAATGAAAATATAACTGAA 45554 Query 1483 GTAATAGTTG 1492 |||| ||||| Sbjct 45555 GTAAGAGTTG 45564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14987935980270