Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq46 228 3e-56 seq82 165 3e-37 seq217 163 9e-37 seq41 156 1e-34 seq410 152 2e-33 seq39 147 7e-32 seq170 145 2e-31 seq275 102 3e-18 >seq46 Length=16939101 Score = 228 bits (252), Expect = 3e-56 Identities = 317/440 (72%), Gaps = 7/440 (2%) Strand=Plus/Plus Query 1407 TGTGTTTTAAACAGACAAGGAGGCAAA-AGAAATACTGTTTTATTTCATGGACCAGCCAG 1465 ||||| |||||| |||| ||| ||| |||||||| || || | || |||||||| || Sbjct 9976887 TGTGTGCTAAACAAACAACTAGGAAAACAGAAATACAATTCTACTACAAGGACCAGCAAG 9976946 Query 1466 CACAGGCAAATCTATTATTGCACAAGCCATAGCAC----AAGCAGTTGGCAATGTTGGTT 1521 |||||| ||| | || || ||| | | | || |||||| ||||| |||| Sbjct 9976947 CACAGGAAAAAGCCTAATAGCTCAAAAAAAAAAAAGGTGAATTAGTTGGTAATGTAGGTT 9977006 Query 1522 GCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTT 1581 |||| ||| || ||||||| || |||||||||||||| ||| |||||| ||| | || | Sbjct 9977007 GCTACAATCCATCCAATGTTAATTTTCCATTTAATGATTGTTGCAACAAAAACGTAATAT 9977066 Query 1582 GGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTG 1641 | |||||||||| ||| |||| || |||| ||| ||||| || ||||| || || | Sbjct 9977067 AGATAGAAGAAGCAGGTGACTTAGGGCAGCTAGTTAACCAATTCAAAGCTATCATGTCAG 9977126 Query 1642 GTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAG 1701 | |||| || | | ||||||||||| || || |||||| |||||||| ||| | | Sbjct 9977127 GACAAAGCATAAGATTAGATCAAAAAGGTAAGGGAAGCAAATCAATTGAACCTACAACTG 9977186 Query 1702 TCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAG 1761 |||| ||||| |||||||| |||| || || || ||||| | || ||| |||||| | Sbjct 9977187 TCATAATGACATCAAATGAGGACATCACTGTAGTAAGAATCAGATGTGAAATAAGACCTG 9977246 Query 1762 AACACACTCAACCAATCAGAGACAGAATG-CTTAACATTCATCTAACACATACCTTGCCT 1820 ||| ||| ||||||| | | || | || | || || | || ||| | || ||| | Sbjct 9977247 AACCCACCAAACCAATTAAACAC-CATTGTGTCAATATAAAGCTTACAAAAACTTTGGAT 9977305 Query 1821 GGTGACTTTGGTTTGGTTGA 1840 |||| |||||| || |||| Sbjct 9977306 GGTGGGTTTGGTGTGATTGA 9977325 >seq82 Length=11943184 Score = 165 bits (182), Expect = 3e-37 Identities = 260/371 (70%), Gaps = 1/371 (0%) Strand=Plus/Plus Query 1408 GTGTTTTAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCA 1467 |||| | |||| |||| ||| || | || || | ||| |||| |||||||| |||| Sbjct 8422236 GTGTACTTAACAAACAATTAGGAAAGTGCAACACCATATTACTTCAAGGACCAGCTAGCA 8422295 Query 1468 CAGGCAAATCTATTATTGCACAAGCCATAGCACAAGC-AGTTGGCAATGTTGGTTGCTAT 1526 |||| || | | || |||||| | | || |||||| ||||| || || || Sbjct 8422296 CAGGAAAGAGTCTAATAGCACAAAAAAATGTGTGAGTTAGTTGGTAATGTGGGCTGTTAC 8422355 Query 1527 AATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTA 1586 || || | |||||||| || ||||| ||||| || |||||| || | || ||| || Sbjct 8422356 AACCCATCTAATGTAAATTTCCCATTCAATGATTGCTGCAACAAAAATATAATATGGATA 8422415 Query 1587 GAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAA 1646 ||||| || || || | ||||| |||||||||| || ||||| || || |||| Sbjct 8422416 GAAGAGGCAGGCAATCTAGGACAATAAGTAAACCAATTCAAAGCAATAATGTCATCTCAA 8422475 Query 1647 ACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATC 1706 | ||| | | || ||||||||||| || ||||| || ||||| || || |||| Sbjct 8422476 AGTATCAGACTAGACCAAAAAGGAAAGGGAAGCAAGTCAATAGAACCTACTCCTGTCACA 8422535 Query 1707 ATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACAC 1766 ||||| |||||||| |||| || | || || || |||| ||| |||||| |||||| Sbjct 8422536 ATGACATCAAATGAGGACATACCATTAGTAAGGATCAGCTGTGAAATAAGACCTGAACAC 8422595 Query 1767 ACTCAACCAAT 1777 || ||||||| Sbjct 8422596 ACCAAACCAAT 8422606 >seq217 Length=4971029 Score = 163 bits (180), Expect = 9e-37 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 1540 TAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTA 1599 |||||||||||||||||||||| ||| || ||| | | |||||||||||| | || | Sbjct 886296 TAAACTTTCCATTTAATGACTGCTGCAATAAAAACATCAAATGGGTAGAAGAACCAGGAA 886237 Query 1600 ACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTG 1659 |||| ||||| ||||||||||| |||||||| || || || |||| || | | Sbjct 886236 ACTTAGGACACCAAGTAAACCAATTTAAAGCAATCATGTCAGGGCAAAGCATAAGACCAG 886177 Query 1660 ATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATG 1719 |||| |||||||| || |||||||| || ||| ||||||||| |||||||| | | || Sbjct 886176 ATCAGAAAGGAAAGGGAAGCAAACAAATCAAACTAACACCAGTGATCATGACATCCAGTG 886117 Query 1720 AGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACA 1767 | ||||||| || ||||| ||||| ||| || ||| ||||||| Sbjct 886116 AATACATTACTAATGTGAGAATTGGCTGTGAACTAAAACCTGAACACA 886069 >seq41 Length=17853887 Score = 156 bits (172), Expect = 1e-34 Identities = 244/343 (71%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 1414 TAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCA 1473 ||||||||||| || |||| |||||| | ||| | |||| || || ||||||||| Sbjct 9096220 TAAACAGACAAATGGGGAAAACAAATACCATCTTACTGAATGGTCCGGCTGGCACAGGCA 9096279 Query 1474 AATCTATTATTGCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAG 1533 |||| | || |||| | ||| || ||||| |||| |||||| || || ||| Sbjct 9096280 CATCTTTGATAGCACTAAAAATATGCCAGCTGGTTGGTAATGCTGGTTGTTACAACCCAG 9096339 Query 1534 CCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACT-TGATTTGGGTAGAAGAA 1592 || | |||||||| | ||| |||||| | || || | | || ||||||||||| Sbjct 9096340 AAAACATCTCATTTCCATTCAGTGATTGTACCCATAAAAAATATAATATGGGTAGAAGAG 9096399 Query 1593 GCTGGTAACTTT--GGACAGCAAGTAAACCAGTTTAAAGCCATT--TGCTCTGGTCAAAC 1648 ||||| ||||| |||||| |||||||||| || ||| | ||| || || || |||| Sbjct 9096400 GCTGGAAACTTATAGGACAGTAAGTAAACCAATTCAAA-CAATTAATG-TCAGGACAAAT 9096457 Query 1649 TATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCAT 1708 | | | ||| ||||||||||||| | ||| ||| | ||||| ||||| ||||| Sbjct 9096458 CGTGAGAACTGACCAAAAAGGAAAAGACTTAAAAACTATTAAGCCAACTCCAGTAATCAT 9096517 Query 1709 GACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAA 1751 ||| || ||||| || ||||| | |||||| | || || ||| Sbjct 9096518 GACAACTAATGAAAATATTACTGAAGTCAGAGTTGGTTGTGAA 9096560 >seq410 Length=524141 Score = 152 bits (168), Expect = 2e-33 Identities = 261/370 (71%), Gaps = 14/370 (4%) Strand=Plus/Plus Query 1414 TAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCA 1473 |||||| |||| || || ||||| || | ||| || |||| ||||| ||||| || | Sbjct 48796 TAAACA-ACAAATGGGTAAGAGAAACACCATCTTACTTAATGGTCCAGCAAGCACTGGTA 48854 Query 1474 AATCTATTATTGCACA--AGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGC 1531 ||||| | || ||||| ||| | || |||| |||||||| |||| ||| | Sbjct 48855 AATCTCTCATAGCACAGAAGCTCTGTGACTT--AGTTTATAATGTTGGCTGCTC-AATCC 48911 Query 1532 AGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGT--AGAA 1589 ||| || || ||||| || |||||||| | | ||| || | |||||||| |||| Sbjct 48912 AGCTAACATATCATTTCCTTTCAATGACTGCATCCGCAAAAATATTATTTGGGTTTAGAA 48971 Query 1590 GAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCT--GGTCAAA 1647 | || || ||| | ||||||||||| || || || ||| || | | | || || Sbjct 48972 G--GCAGGAAACCTAGGACAGCAAGTTAATCAATTCAAA--CAGCTAATGTTAGGGCAGG 49027 Query 1648 CTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCA 1707 | || | || ||||||||||| ||||| |||||| || |||| |||| | || |||| Sbjct 49028 CAGTTAGAATAGATCAAAAAGGGAAAGGAAGCAAAATCATAGAACTAACAGCTGTAATCA 49087 Query 1708 TGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACA 1767 | ||||| ||||||||||| || | |||||||| ||||| | | |||||| |||| | Sbjct 49088 TAACCACCAATGAGAACATAACTGAGGTCAGAACTGGCTGTGTATTAAGACCTAAACATA 49147 Query 1768 CTCAACCAAT 1777 || | |||| Sbjct 49148 CTGAGACAAT 49157 >seq39 Length=18005330 Score = 147 bits (162), Expect = 7e-32 Identities = 301/440 (68%), Gaps = 8/440 (2%) Strand=Plus/Plus Query 1413 TTAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGC 1472 ||||||| |||| || |||||||| || | || ||||||||||| || || ||| Sbjct 8062979 TTAAACAAACAAATGGGAAAAAGAAAAACAATGCTACTTCATGGACCAAGAAGTACTGGC 8063038 Query 1473 AAATCTATTATTGCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCA 1532 |||||| | || |||| ||| || | ||| |||||| ||||||| ||| || Sbjct 8063039 AAATCTTTAATCACACAGAAAATATTCCAGTTACTTGATAATGTTTGTTGCTACAATCCA 8063098 Query 1533 GCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAA 1592 | ||| |||| || ||||| ||||||||||| || || || | || | |||||||||| Sbjct 8063099 GTTAATTTAAATTTCCCATTCAATGACTGTACAAATAAAAATATAATATAGGTAGAAGAA 8063158 Query 1593 GC-TGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTAT 1651 || | | || || | || |||||| || || ||| | ||| ||| ||| | | Sbjct 8063159 GCAAGCTCAC-TTAGTCAATGAGTAAATCAATTCAAA-CAATT---AATGGACAATCCGT 8063213 Query 1652 TCG-CATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGA 1710 | ||||| |||||||||||||| | |||| ||||||||||| ||| | || |||| Sbjct 8063214 CAGAAATTGAGCAAAAAGGAAAAGGAAACAAAATAATTGAACCAACTCCATTAATAATGA 8063273 Query 1711 CCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTC 1770 | || || || | || | | || ||||| | || ||| ||||| ||||| | Sbjct 8063274 CAACTAAAGAAGATATCA-AAAAGTTAGAATTGACTATGAACTAAGACTTGAACAGATAT 8063332 Query 1771 AACCAATCAGAGACAGAATGCTTAACATTCATCTAACACATACCTTGCCTGGTGACTTTG 1830 ||||||| | ||| ||| |||| | || | ||| | | || ||| || |||| Sbjct 8063333 AACCAATTAAAGATAGATATATTAATTTATATATGACAAAACCACTGAGTGGAGATTTTG 8063392 Query 1831 GTTTGGTTGACAAAAATGAA 1850 || || |||| || ||||| Sbjct 8063393 GTCTGATTGATAATGATGAA 8063412 >seq170 Length=7020341 Score = 145 bits (160), Expect = 2e-31 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 1547 TCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGG 1606 |||||| ||||| || ||| || ||| | ||||| | || || ||||||||||| || Sbjct 1687313 TCCATTCAATGATTGCTACAATAAAAACATAATTTGAATCGAGGAGGCTGGTAACTTAGG 1687372 Query 1607 ACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAA 1666 ||||| |||||| || || ||||| || || || |||| ||| | | || ||||| Sbjct 1687373 ACAGCTAGTAAATCAATTCAAAGCTATCATGTCAGGACAAAGCATTAGACTAGACCAAAA 1687432 Query 1667 AGGAAAAGGCAGCAAA-CAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACA 1725 |||||||||||||||| ||| ||||| ||| |||||||| ||||| | |||||| ||| Sbjct 1687433 AGGAAAAGGCAGCAAATCAG-TTGAATGAACTCCAGTCATAATGACATCCAATGAGGACA 1687491 Query 1726 TTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAAT 1777 | || || ||||| ||||| ||| |||||| || || ||| | || || Sbjct 1687492 TAACTTGTGTAAGAATCGGCTGTGAAATAAGACCTGAGCATACTGAGCCTAT 1687543 >seq275 Length=3308571 Score = 102 bits (112), Expect = 3e-18 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Plus Query 1555 ATGACTGTACCAACAAGAA-CTTGATTTGGGTAGAAGAAGCTGG-TAACTTTGGACAGCA 1612 ||||||||||||| || || | | || |||||||||||||| | | ||| | ||||| Sbjct 3102934 ATGACTGTACCAATAAAAAACATTATATGGGTAGAAGAAGCAAGCTCACTAAGT-CAGCA 3102992 Query 1613 AGTAAACCAGTTTAAAGCCATTTGCTC-TGGTCAAACTATTCGCATTGATCAAAAAGGAA 1671 || || ||| || || || | | | ||| ||| | | |||||||| ||||||| Sbjct 3102993 AGGAAGCCAATTCAA-GCAACTAACGAGTGGACAATTAGTGAGAATTGATCAGAAAGGAA 3103051 Query 1672 AAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTACAG 1731 | || |||||| | |||||||||||| | || |||| || ||| | |||| ||| Sbjct 3103052 AGGGAAGCAAAACAACAGAACCAACACCACTAATAATGATAACTAATAAAGACATAACAA 3103111 Query 1732 TGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAAT 1777 || |||| ||||| ||| ||||||||| ||||| ||||||| Sbjct 3103112 AAGTAAGAACTGGCTGTGAATTAAGACCAGAGCACACATAACCAAT 3103157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16364458845060