Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001510.1
Length=5149
Score E
Sequences producing significant alignments: (Bits) Value
seq46 228 3e-56
seq82 165 3e-37
seq217 163 9e-37
seq41 156 1e-34
seq410 152 2e-33
seq39 147 7e-32
seq170 145 2e-31
seq275 102 3e-18
>seq46
Length=16939101
Score = 228 bits (252), Expect = 3e-56
Identities = 317/440 (72%), Gaps = 7/440 (2%)
Strand=Plus/Plus
Query 1407 TGTGTTTTAAACAGACAAGGAGGCAAA-AGAAATACTGTTTTATTTCATGGACCAGCCAG 1465
||||| |||||| |||| ||| ||| |||||||| || || | || |||||||| ||
Sbjct 9976887 TGTGTGCTAAACAAACAACTAGGAAAACAGAAATACAATTCTACTACAAGGACCAGCAAG 9976946
Query 1466 CACAGGCAAATCTATTATTGCACAAGCCATAGCAC----AAGCAGTTGGCAATGTTGGTT 1521
|||||| ||| | || || ||| | | | || |||||| ||||| ||||
Sbjct 9976947 CACAGGAAAAAGCCTAATAGCTCAAAAAAAAAAAAGGTGAATTAGTTGGTAATGTAGGTT 9977006
Query 1522 GCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTT 1581
|||| ||| || ||||||| || |||||||||||||| ||| |||||| ||| | || |
Sbjct 9977007 GCTACAATCCATCCAATGTTAATTTTCCATTTAATGATTGTTGCAACAAAAACGTAATAT 9977066
Query 1582 GGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTG 1641
| |||||||||| ||| |||| || |||| ||| ||||| || ||||| || || |
Sbjct 9977067 AGATAGAAGAAGCAGGTGACTTAGGGCAGCTAGTTAACCAATTCAAAGCTATCATGTCAG 9977126
Query 1642 GTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAG 1701
| |||| || | | ||||||||||| || || |||||| |||||||| ||| | |
Sbjct 9977127 GACAAAGCATAAGATTAGATCAAAAAGGTAAGGGAAGCAAATCAATTGAACCTACAACTG 9977186
Query 1702 TCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAG 1761
|||| ||||| |||||||| |||| || || || ||||| | || ||| |||||| |
Sbjct 9977187 TCATAATGACATCAAATGAGGACATCACTGTAGTAAGAATCAGATGTGAAATAAGACCTG 9977246
Query 1762 AACACACTCAACCAATCAGAGACAGAATG-CTTAACATTCATCTAACACATACCTTGCCT 1820
||| ||| ||||||| | | || | || | || || | || ||| | || ||| |
Sbjct 9977247 AACCCACCAAACCAATTAAACAC-CATTGTGTCAATATAAAGCTTACAAAAACTTTGGAT 9977305
Query 1821 GGTGACTTTGGTTTGGTTGA 1840
|||| |||||| || ||||
Sbjct 9977306 GGTGGGTTTGGTGTGATTGA 9977325
>seq82
Length=11943184
Score = 165 bits (182), Expect = 3e-37
Identities = 260/371 (70%), Gaps = 1/371 (0%)
Strand=Plus/Plus
Query 1408 GTGTTTTAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCA 1467
|||| | |||| |||| ||| || | || || | ||| |||| |||||||| ||||
Sbjct 8422236 GTGTACTTAACAAACAATTAGGAAAGTGCAACACCATATTACTTCAAGGACCAGCTAGCA 8422295
Query 1468 CAGGCAAATCTATTATTGCACAAGCCATAGCACAAGC-AGTTGGCAATGTTGGTTGCTAT 1526
|||| || | | || |||||| | | || |||||| ||||| || || ||
Sbjct 8422296 CAGGAAAGAGTCTAATAGCACAAAAAAATGTGTGAGTTAGTTGGTAATGTGGGCTGTTAC 8422355
Query 1527 AATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTA 1586
|| || | |||||||| || ||||| ||||| || |||||| || | || ||| ||
Sbjct 8422356 AACCCATCTAATGTAAATTTCCCATTCAATGATTGCTGCAACAAAAATATAATATGGATA 8422415
Query 1587 GAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAA 1646
||||| || || || | ||||| |||||||||| || ||||| || || ||||
Sbjct 8422416 GAAGAGGCAGGCAATCTAGGACAATAAGTAAACCAATTCAAAGCAATAATGTCATCTCAA 8422475
Query 1647 ACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATC 1706
| ||| | | || ||||||||||| || ||||| || ||||| || || ||||
Sbjct 8422476 AGTATCAGACTAGACCAAAAAGGAAAGGGAAGCAAGTCAATAGAACCTACTCCTGTCACA 8422535
Query 1707 ATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACAC 1766
||||| |||||||| |||| || | || || || |||| ||| |||||| ||||||
Sbjct 8422536 ATGACATCAAATGAGGACATACCATTAGTAAGGATCAGCTGTGAAATAAGACCTGAACAC 8422595
Query 1767 ACTCAACCAAT 1777
|| |||||||
Sbjct 8422596 ACCAAACCAAT 8422606
>seq217
Length=4971029
Score = 163 bits (180), Expect = 9e-37
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 1540 TAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTA 1599
|||||||||||||||||||||| ||| || ||| | | |||||||||||| | || |
Sbjct 886296 TAAACTTTCCATTTAATGACTGCTGCAATAAAAACATCAAATGGGTAGAAGAACCAGGAA 886237
Query 1600 ACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTG 1659
|||| ||||| ||||||||||| |||||||| || || || |||| || | |
Sbjct 886236 ACTTAGGACACCAAGTAAACCAATTTAAAGCAATCATGTCAGGGCAAAGCATAAGACCAG 886177
Query 1660 ATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATG 1719
|||| |||||||| || |||||||| || ||| ||||||||| |||||||| | | ||
Sbjct 886176 ATCAGAAAGGAAAGGGAAGCAAACAAATCAAACTAACACCAGTGATCATGACATCCAGTG 886117
Query 1720 AGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACA 1767
| ||||||| || ||||| ||||| ||| || ||| |||||||
Sbjct 886116 AATACATTACTAATGTGAGAATTGGCTGTGAACTAAAACCTGAACACA 886069
>seq41
Length=17853887
Score = 156 bits (172), Expect = 1e-34
Identities = 244/343 (71%), Gaps = 7/343 (2%)
Strand=Plus/Plus
Query 1414 TAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCA 1473
||||||||||| || |||| |||||| | ||| | |||| || || |||||||||
Sbjct 9096220 TAAACAGACAAATGGGGAAAACAAATACCATCTTACTGAATGGTCCGGCTGGCACAGGCA 9096279
Query 1474 AATCTATTATTGCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCAG 1533
|||| | || |||| | ||| || ||||| |||| |||||| || || |||
Sbjct 9096280 CATCTTTGATAGCACTAAAAATATGCCAGCTGGTTGGTAATGCTGGTTGTTACAACCCAG 9096339
Query 1534 CCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACT-TGATTTGGGTAGAAGAA 1592
|| | |||||||| | ||| |||||| | || || | | || |||||||||||
Sbjct 9096340 AAAACATCTCATTTCCATTCAGTGATTGTACCCATAAAAAATATAATATGGGTAGAAGAG 9096399
Query 1593 GCTGGTAACTTT--GGACAGCAAGTAAACCAGTTTAAAGCCATT--TGCTCTGGTCAAAC 1648
||||| ||||| |||||| |||||||||| || ||| | ||| || || || ||||
Sbjct 9096400 GCTGGAAACTTATAGGACAGTAAGTAAACCAATTCAAA-CAATTAATG-TCAGGACAAAT 9096457
Query 1649 TATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCAT 1708
| | | ||| ||||||||||||| | ||| ||| | ||||| ||||| |||||
Sbjct 9096458 CGTGAGAACTGACCAAAAAGGAAAAGACTTAAAAACTATTAAGCCAACTCCAGTAATCAT 9096517
Query 1709 GACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAA 1751
||| || ||||| || ||||| | |||||| | || || |||
Sbjct 9096518 GACAACTAATGAAAATATTACTGAAGTCAGAGTTGGTTGTGAA 9096560
>seq410
Length=524141
Score = 152 bits (168), Expect = 2e-33
Identities = 261/370 (71%), Gaps = 14/370 (4%)
Strand=Plus/Plus
Query 1414 TAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGCA 1473
|||||| |||| || || ||||| || | ||| || |||| ||||| ||||| || |
Sbjct 48796 TAAACA-ACAAATGGGTAAGAGAAACACCATCTTACTTAATGGTCCAGCAAGCACTGGTA 48854
Query 1474 AATCTATTATTGCACA--AGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGC 1531
||||| | || ||||| ||| | || |||| |||||||| |||| ||| |
Sbjct 48855 AATCTCTCATAGCACAGAAGCTCTGTGACTT--AGTTTATAATGTTGGCTGCTC-AATCC 48911
Query 1532 AGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGT--AGAA 1589
||| || || ||||| || |||||||| | | ||| || | |||||||| ||||
Sbjct 48912 AGCTAACATATCATTTCCTTTCAATGACTGCATCCGCAAAAATATTATTTGGGTTTAGAA 48971
Query 1590 GAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCT--GGTCAAA 1647
| || || ||| | ||||||||||| || || || ||| || | | | || ||
Sbjct 48972 G--GCAGGAAACCTAGGACAGCAAGTTAATCAATTCAAA--CAGCTAATGTTAGGGCAGG 49027
Query 1648 CTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCA 1707
| || | || ||||||||||| ||||| |||||| || |||| |||| | || ||||
Sbjct 49028 CAGTTAGAATAGATCAAAAAGGGAAAGGAAGCAAAATCATAGAACTAACAGCTGTAATCA 49087
Query 1708 TGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACA 1767
| ||||| ||||||||||| || | |||||||| ||||| | | |||||| |||| |
Sbjct 49088 TAACCACCAATGAGAACATAACTGAGGTCAGAACTGGCTGTGTATTAAGACCTAAACATA 49147
Query 1768 CTCAACCAAT 1777
|| | ||||
Sbjct 49148 CTGAGACAAT 49157
>seq39
Length=18005330
Score = 147 bits (162), Expect = 7e-32
Identities = 301/440 (68%), Gaps = 8/440 (2%)
Strand=Plus/Plus
Query 1413 TTAAACAGACAAGGAGGCAAAAGAAATACTGTTTTATTTCATGGACCAGCCAGCACAGGC 1472
||||||| |||| || |||||||| || | || ||||||||||| || || |||
Sbjct 8062979 TTAAACAAACAAATGGGAAAAAGAAAAACAATGCTACTTCATGGACCAAGAAGTACTGGC 8063038
Query 1473 AAATCTATTATTGCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTATAATGCA 1532
|||||| | || |||| ||| || | ||| |||||| ||||||| ||| ||
Sbjct 8063039 AAATCTTTAATCACACAGAAAATATTCCAGTTACTTGATAATGTTTGTTGCTACAATCCA 8063098
Query 1533 GCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAA 1592
| ||| |||| || ||||| ||||||||||| || || || | || | ||||||||||
Sbjct 8063099 GTTAATTTAAATTTCCCATTCAATGACTGTACAAATAAAAATATAATATAGGTAGAAGAA 8063158
Query 1593 GC-TGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTAT 1651
|| | | || || | || |||||| || || ||| | ||| ||| ||| | |
Sbjct 8063159 GCAAGCTCAC-TTAGTCAATGAGTAAATCAATTCAAA-CAATT---AATGGACAATCCGT 8063213
Query 1652 TCG-CATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGA 1710
| ||||| |||||||||||||| | |||| ||||||||||| ||| | || ||||
Sbjct 8063214 CAGAAATTGAGCAAAAAGGAAAAGGAAACAAAATAATTGAACCAACTCCATTAATAATGA 8063273
Query 1711 CCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTC 1770
| || || || | || | | || ||||| | || ||| ||||| ||||| |
Sbjct 8063274 CAACTAAAGAAGATATCA-AAAAGTTAGAATTGACTATGAACTAAGACTTGAACAGATAT 8063332
Query 1771 AACCAATCAGAGACAGAATGCTTAACATTCATCTAACACATACCTTGCCTGGTGACTTTG 1830
||||||| | ||| ||| |||| | || | ||| | | || ||| || ||||
Sbjct 8063333 AACCAATTAAAGATAGATATATTAATTTATATATGACAAAACCACTGAGTGGAGATTTTG 8063392
Query 1831 GTTTGGTTGACAAAAATGAA 1850
|| || |||| || |||||
Sbjct 8063393 GTCTGATTGATAATGATGAA 8063412
>seq170
Length=7020341
Score = 145 bits (160), Expect = 2e-31
Identities = 173/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 1547 TCCATTTAATGACTGTACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGG 1606
|||||| ||||| || ||| || ||| | ||||| | || || ||||||||||| ||
Sbjct 1687313 TCCATTCAATGATTGCTACAATAAAAACATAATTTGAATCGAGGAGGCTGGTAACTTAGG 1687372
Query 1607 ACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAA 1666
||||| |||||| || || ||||| || || || |||| ||| | | || |||||
Sbjct 1687373 ACAGCTAGTAAATCAATTCAAAGCTATCATGTCAGGACAAAGCATTAGACTAGACCAAAA 1687432
Query 1667 AGGAAAAGGCAGCAAA-CAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACA 1725
|||||||||||||||| ||| ||||| ||| |||||||| ||||| | |||||| |||
Sbjct 1687433 AGGAAAAGGCAGCAAATCAG-TTGAATGAACTCCAGTCATAATGACATCCAATGAGGACA 1687491
Query 1726 TTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAAT 1777
| || || ||||| ||||| ||| |||||| || || ||| | || ||
Sbjct 1687492 TAACTTGTGTAAGAATCGGCTGTGAAATAAGACCTGAGCATACTGAGCCTAT 1687543
>seq275
Length=3308571
Score = 102 bits (112), Expect = 3e-18
Identities = 162/226 (72%), Gaps = 5/226 (2%)
Strand=Plus/Plus
Query 1555 ATGACTGTACCAACAAGAA-CTTGATTTGGGTAGAAGAAGCTGG-TAACTTTGGACAGCA 1612
||||||||||||| || || | | || |||||||||||||| | | ||| | |||||
Sbjct 3102934 ATGACTGTACCAATAAAAAACATTATATGGGTAGAAGAAGCAAGCTCACTAAGT-CAGCA 3102992
Query 1613 AGTAAACCAGTTTAAAGCCATTTGCTC-TGGTCAAACTATTCGCATTGATCAAAAAGGAA 1671
|| || ||| || || || | | | ||| ||| | | |||||||| |||||||
Sbjct 3102993 AGGAAGCCAATTCAA-GCAACTAACGAGTGGACAATTAGTGAGAATTGATCAGAAAGGAA 3103051
Query 1672 AAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTACAG 1731
| || |||||| | |||||||||||| | || |||| || ||| | |||| |||
Sbjct 3103052 AGGGAAGCAAAACAACAGAACCAACACCACTAATAATGATAACTAATAAAGACATAACAA 3103111
Query 1732 TGGTCAGAATAGGCTGCGAAGAAAGACCAGAACACACTCAACCAAT 1777
|| |||| ||||| ||| ||||||||| ||||| |||||||
Sbjct 3103112 AAGTAAGAACTGGCTGTGAATTAAGACCAGAGCACACATAACCAAT 3103157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16364458845060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |