Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq39 248 3e-62 seq46 226 1e-55 seq217 172 2e-39 seq82 172 2e-39 seq170 161 3e-36 seq41 159 1e-35 seq410 140 1e-29 seq275 129 2e-26 >seq39 Length=18005330 Score = 248 bits (274), Expect = 3e-62 Identities = 559/825 (68%), Gaps = 45/825 (5%) Strand=Plus/Plus Query 1172 GAAGACTGGATGATGTTACAACCAGATAGTTATATTGAAATGATGGCACAACCAGGAGGT 1231 ||| | |||||| | | ||||||| || ||| | | || || |||||||||||||| Sbjct 8062733 GAAAAATGGATGTTAGAAGAACCAGACAGCTATGTACACATCATAGCACAACCAGGAGGA 8062792 Query 1232 GAAAATCTTTTAAAAAATACAC-TTGAAATTTG--TACTTTGACTTTAGCAAGAACAAAA 1288 ||| | | | ||||| | | ||||||| | || ||||| |||| ||| Sbjct 8062793 GAAT-TATATGCAAAAACAATCATTGAAATGACCCTCCTAAAACTTTCCAAAGAG--AAA 8062849 Query 1289 ACAGCATTTGAATTAATACTTGAAAAAGCAGATAATACTAAACTAACTAACTTTGATC-- 1346 ||||||| | ||| | || ||||| || ||| |||| ||||||| Sbjct 8062850 ACAGCATATAGCTTAGTGCTAGAAAATGC------TAC------AACTGACTTTGAAGAA 8062897 Query 1347 -TTGCAAATTCTAGAACATGTCAAATTTTTAGAATGCACGGATGGAATTGGATTAAAGTT 1405 ||| |||| ||| | || | || || | | | ||||||||| ||||| Sbjct 8062898 ATTGAAAATGCTAAACTATATGCTATATTAAAAGGAAATGGATGGAATCCATACAAAGTA 8062957 Query 1406 TGTCACGCTATAGCATGTGTTTTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTT 1465 || || ||| |||| ||||| | |||| || |||||||| ||| | || || Sbjct 8062958 ATACAAGCAATAACATGCACATTAAACAAACAAATGGGAAAAAGAAAAACAATGCTACTT 8063017 Query 1466 CATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGT 1525 ||||||||| |||||| || |||||| | || | || ||| || | | | Sbjct 8063018 CATGGACCAAGAAGTACTGGCAAATCTTTAATCACACAGAAAATATTCCAGTTACTTGAT 8063077 Query 1526 AATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAA 1585 |||||| |||| || ||| ||| ||| ||||||| ||||| ||||||||||| |||||| Sbjct 8063078 AATGTTTGTTGCTACAATCCAGTTAATTTAAATTTCCCATTCAATGACTGTACAAATAAA 8063137 Query 1586 AATTTAATTTGGATTGAAGAAGC-TGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGC 1644 ||| |||| | | | |||||||| | | || || ||||| ||| |||||||| ||| | Sbjct 8063138 AATATAATATAGGTAGAAGAAGCAAGCTCAC-TTAGTCAATGAGTAAATCAATTCAAA-C 8063195 Query 1645 AATTTGTTCTGGACAAACAATTAG-AATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTG 1703 ||| | ||||||| | | || |||||| |||||||| ||||||| || ||||| Sbjct 8063196 AAT---TAATGGACAATCCGTCAGAAATTGAGCAAAAAGGAAAAGGAAACAAAATAATTG 8063252 Query 1704 AACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTG 1763 ||||||||||| |||| ||||||||||| ||| |||| | || || ||||||| | || Sbjct 8063253 AACCAACTCCATTAATAATGACAACTAAAGAAGATATCA-AAAAGTTAGAATTGACTATG 8063311 Query 1764 AAGAAAGACCTGAACATACACAACCAATAAGAGACAGAATGTTGAACATTAAGTTA-GTA 1822 || ||||| |||||| | | ||||||| | ||| ||| | ||||| ||| || Sbjct 8063312 AACTAAGACTTGAACAGATATAACCAATTAAAGATAGA------TATATTAATTTATATA 8063365 Query 1823 TGTAA-----GCTTCCAGGAGACTTTGGTTTGGTTGATAAAGAAGAATGGCCTTTAATAT 1877 || | || ||||| |||||| || ||||||| || ||| || ||||| Sbjct 8063366 TGACAAAACCACTGAGTGGAGATTTTGGTCTGATTGATAATGATGAAATACC--AAATAT 8063423 Query 1878 GTGC--ATGGTTAGTTAAACATGGTTATGAATCAACCATGGCTAACTATACACATCATTG 1935 | | || | |||||| | ||||| ||||||| ||||| ||| | || Sbjct 8063424 ATTCAAATTCATGAAAAAACATAATCTTGAATGAACCATGAAAAACTACACAGAGACATG 8063483 Query 1936 GGGAAAAGTACCAGAATGGGATGAAAACTGGGCGGAGCCTAAAAT 1980 |||| ||| |||||||||| |||||||||||||| | ||||| Sbjct 8063484 GGGAGGAGTGTCAGAATGGGAAGAAAACTGGGCGGACTCAAAAAT 8063528 >seq46 Length=16939101 Score = 226 bits (250), Expect = 1e-55 Identities = 278/378 (74%), Gaps = 9/378 (2%) Strand=Plus/Plus Query 1421 TGTGTTTTAAATAGACAAGGTGGTAAA-AGAAATACAGTTCTTTTTCATGGACCAGCAAG 1479 ||||| |||| | |||| || ||| ||||||||| |||| | || ||||||||||| Sbjct 9976887 TGTGTGCTAAACAAACAACTAGGAAAACAGAAATACAATTCTACTACAAGGACCAGCAAG 9976946 Query 1480 TACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCTG------TGGGTAATGTTGG 1533 ||||||||| | || |||||| | | | ||| || | |||||||| || Sbjct 9976947 CACAGGAAAAAGCCTAATAGCTCAAAAAAAA--AAAAGGTGAATTAGTTGGTAATGTAGG 9977004 Query 1534 TTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAAT 1593 ||| || ||| || | ||||| ||||||||||||||||| ||| ||| ||||| |||| Sbjct 9977005 TTGCTACAATCCATCCAATGTTAATTTTCCATTTAATGATTGTTGCAACAAAAACGTAAT 9977064 Query 1594 TTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTC 1653 | ||| |||||||| ||| |||| || || | |||||| ||||| ||||| || || Sbjct 9977065 ATAGATAGAAGAAGCAGGTGACTTAGGGCAGCTAGTTAACCAATTCAAAGCTATCATGTC 9977124 Query 1654 TGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCC 1713 ||||||| || ||| | |||||||||||||| ||||| || ||||||||| || | Sbjct 9977125 AGGACAAAGCATAAGATTAGATCAAAAAGGTAAGGGAAGCAAATCAATTGAACCTACAAC 9977184 Query 1714 AGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACC 1773 || || |||||| | ||||| | || || | || ||||| |||||||| |||||| Sbjct 9977185 TGTCATAATGACATCAAATGAGGACATCACTGTAGTAAGAATCAGATGTGAAATAAGACC 9977244 Query 1774 TGAACATACACAACCAAT 1791 ||||| || ||||||| Sbjct 9977245 TGAACCCACCAAACCAAT 9977262 >seq217 Length=4971029 Score = 172 bits (190), Expect = 2e-39 Identities = 182/240 (76%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1554 TAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTA 1613 |||| ||||||||||||||||| ||||||||| | | ||| | |||||| | || | Sbjct 886296 TAAACTTTCCATTTAATGACTGCTGCAATAAAAACATCAAATGGGTAGAAGAACCAGGAA 886237 Query 1614 ACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTG 1673 |||| || || ||||| || |||||||||||||| || || |||| || ||| | Sbjct 886236 ACTTAGGACACCAAGTAAACCAATTTAAAGCAATCATGTCAGGGCAAAGCATAAGACCAG 886177 Query 1674 ATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATG 1733 |||| ||||| || ||||| || ||||| ||| ||| ||||| || |||||| | | || Sbjct 886176 ATCAGAAAGGAAAGGGAAGCAAACAAATCAAACTAACACCAGTGATCATGACATCCAGTG 886117 Query 1734 AAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAA 1793 || | || || | |||||||||||| |||||| || ||||||||| | | | ||||||| Sbjct 886116 AATACATTACTAATGTGAGAATTGGCTGTGAACTAAAACCTGAACACAGAGAGCCAATAA 886057 >seq82 Length=11943184 Score = 172 bits (190), Expect = 2e-39 Identities = 240/332 (72%), Gaps = 7/332 (2%) Strand=Plus/Plus Query 1464 TTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCT-GTG 1522 |||| |||||||| || |||||||| | | || || ||| | | || | || Sbjct 8422278 TTCAAGGACCAGCTAGCACAGGAAAGAGTCTAATAGCACAAAAAAATGTGTGAGTTAGTT 8422337 Query 1523 GGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAAT 1582 |||||||| || ||||| || || | ||||||||||| ||||| ||||| || ||| Sbjct 8422338 GGTAATGTGGGCTGTTACAACCCATCTAATGTAAATTTCCCATTCAATGATTGCTGCAAC 8422397 Query 1583 AAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAA 1642 |||||| |||| ||||| ||||| || || || | || ||| |||| || ||||| ||| Sbjct 8422398 AAAAATATAATATGGATAGAAGAGGCAGGCAATCTAGGACAATAAGTAAACCAATTCAAA 8422457 Query 1643 GCAAT-TTGT--TCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAA 1699 ||||| ||| ||| |||| || ||| | || |||||||| || ||||| ||| | Sbjct 8422458 GCAATAATGTCATCT---CAAAGTATCAGACTAGACCAAAAAGGAAAGGGAAGCAAGTCA 8422514 Query 1700 ATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGA 1759 || ||||| ||||| || | |||||| | ||||| | ||| || | || || || | Sbjct 8422515 ATAGAACCTACTCCTGTCACAATGACATCAAATGAGGACATACCATTAGTAAGGATCAGC 8422574 Query 1760 TGTGAAGAAAGACCTGAACATACACAACCAAT 1791 |||||| |||||||||||| || ||||||| Sbjct 8422575 TGTGAAATAAGACCTGAACACACCAAACCAAT 8422606 >seq170 Length=7020341 Score = 161 bits (178), Expect = 3e-36 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 1561 TCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGG 1620 |||||| ||||| || ||||||||| ||||||| || || || ||||||||||| || Sbjct 1687313 TCCATTCAATGATTGCTACAATAAAAACATAATTTGAATCGAGGAGGCTGGTAACTTAGG 1687372 Query 1621 TCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAA 1680 || | ||| |||||||| ||||| || || ||||||| |||||| | || ||||| Sbjct 1687373 ACAGCTAGTAAATCAATTCAAAGCTATCATGTCAGGACAAAGCATTAGACTAGACCAAAA 1687432 Query 1681 AGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATAT 1740 ||| ||||| || || | ||||| ||||||||| || |||||| | ||||| | || Sbjct 1687433 AGGAAAAGGCAGCAAATCAGTTGAATGAACTCCAGTCATAATGACATCCAATGAGGACAT 1687492 Query 1741 AACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATAC 1782 ||| ||| ||||| || |||||| ||||||||| ||||| Sbjct 1687493 AACTTGTGTAAGAATCGGCTGTGAAATAAGACCTGAGCATAC 1687534 >seq41 Length=17853887 Score = 159 bits (176), Expect = 1e-35 Identities = 248/344 (72%), Gaps = 9/344 (3%) Strand=Plus/Plus Query 1428 TAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAA 1487 |||| |||||| || |||| |||||| | | | |||| || || | ||||| | Sbjct 9096220 TAAACAGACAAATGGGGAAAACAAATACCATCTTACTGAATGGTCCGGCTGGCACAGGCA 9096279 Query 1488 AATCTATCATTGCTCAAGCCATAGCACAAGCTG-TGGGTAATGTTGGTTGTTATAATGCA 1546 |||| | || || | | ||| || |||| | ||||||| ||||||||| || || Sbjct 9096280 CATCTTTGATAGCACTAAAAATATGCCA-GCTGGTTGGTAATGCTGGTTGTTACAACCCA 9096338 Query 1547 GCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATT-TAATTTGGATTGAAGA 1605 | ||| | |||||||| | ||| |||||| ||||||| | |||| ||| | ||||| Sbjct 9096339 GAAAACATCTCATTTCCATTCAGTGATTGTACCCATAAAAAATATAATATGGGTAGAAGA 9096398 Query 1606 AGCTGGTAACTTT--GGTCAACAAGTTAATCAATTTAAAGCAATTTGT-TCTGGACAAAC 1662 ||||| ||||| || || |||| || ||||| ||| ||||| | || ||||||| Sbjct 9096399 GGCTGGAAACTTATAGGACAGTAAGTAAACCAATTCAAA-CAATTAATGTCAGGACAAAT 9096457 Query 1663 AATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAA-ATTGAACCAACTCCAGTAATTA 1721 | |||| ||| |||||||| |||| | ||| | ||| | |||||||||||||| | Sbjct 9096458 CGTGAGAACTGACCAAAAAGGAAAAG-ACTTAAAAACTATTAAGCCAACTCCAGTAATCA 9096516 Query 1722 TGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAA 1765 ||||||||||||||||||| || || ||| |||| |||||| Sbjct 9096517 TGACAACTAATGAAAATATTACTGAAGTCAGAGTTGGTTGTGAA 9096560 >seq410 Length=524141 Score = 140 bits (154), Expect = 1e-29 Identities = 242/345 (70%), Gaps = 9/345 (3%) Strand=Plus/Plus Query 1442 GGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCT 1501 ||||| ||||| || | | || |||| |||||||| || || |||||| |||| || Sbjct 48809 GGTAAGAGAAACACCATCTTACTTAATGGTCCAGCAAGCACTGGTAAATCTCTCATAGCA 48868 Query 1502 CA--AGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATT 1559 || ||| | || | | ||||||||| || | ||| |||| || || | Sbjct 48869 CAGAAGCTCTGTGACTTAGTTTA--TAATGTTGGCTGCTC-AATCCAGCTAACATATCAT 48925 Query 1560 TTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTG 1619 |||| || |||||||| | | |||||| | |||||| || | | || || ||| | | Sbjct 48926 TTCCTTTCAATGACTGCATCCGCAAAAATATTATTTGGGTTTAGAAGGCAGGAAACCTAG 48985 Query 1620 GTCAACAAGTTAATCAATTTAAAGCAATT--TGTTCTGGACAAACAATTAGAATTGATCA 1677 | || |||||||||||||| ||| || | |||| || || || ||||||| ||||| Sbjct 48986 GACAGCAAGTTAATCAATTCAAA-CAGCTAATGTTAGGG-CAGGCAGTTAGAATAGATCA 49043 Query 1678 AAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAA 1737 |||||| |||||||| || || |||| ||| | ||||| || || || ||||| || Sbjct 49044 AAAAGGGAAAGGAAGCAAAATCATAGAACTAACAGCTGTAATCATAACCACCAATGAGAA 49103 Query 1738 TATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATAC 1782 ||||| || |||| ||| |||| | ||||||| ||||||| Sbjct 49104 CATAACTGAGGTCAGAACTGGCTGTGTATTAAGACCTAAACATAC 49148 >seq275 Length=3308571 Score = 129 bits (142), Expect = 2e-26 Identities = 171/231 (74%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 1569 ATGACTGTACCAATAAAAATT-TAATTTGGATTGAAGAAGCTGG-TAACTTTGGTCAACA 1626 ||||||||||||||||||| | || ||| | |||||||| | | ||| | ||| || Sbjct 3102934 ATGACTGTACCAATAAAAAACATTATATGGGTAGAAGAAGCAAGCTCACTAAG-TCAGCA 3102992 Query 1627 AGTTAATCAATTTAAAGCAATTTGTTC-TGGACAAACAATTAGAATTGATCAAAAAGGTA 1685 || | ||||| || |||| | ||||||| | | ||||||||||| ||||| | Sbjct 3102993 AGGAAGCCAATTCAA-GCAACTAACGAGTGGACAATTAGTGAGAATTGATCAGAAAGGAA 3103051 Query 1686 AAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAA 1745 | ||||| || || |||||||| ||| |||| |||| ||||||| || | ||||||| Sbjct 3103052 AGGGAAGCAAAACAACAGAACCAACACCACTAATAATGATAACTAATAAAGACATAACAA 3103111 Query 1746 TTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAAGAG 1796 || |||| ||| |||||| |||||| || || ||| ||||||||| || Sbjct 3103112 AAGTAAGAACTGGCTGTGAATTAAGACCAGAGCACACATAACCAATAAAAG 3103162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16921247237520