Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001539.1
Length=5323
Score E
Sequences producing significant alignments: (Bits) Value
seq39 248 3e-62
seq46 226 1e-55
seq217 172 2e-39
seq82 172 2e-39
seq170 161 3e-36
seq41 159 1e-35
seq410 140 1e-29
seq275 129 2e-26
>seq39
Length=18005330
Score = 248 bits (274), Expect = 3e-62
Identities = 559/825 (68%), Gaps = 45/825 (5%)
Strand=Plus/Plus
Query 1172 GAAGACTGGATGATGTTACAACCAGATAGTTATATTGAAATGATGGCACAACCAGGAGGT 1231
||| | |||||| | | ||||||| || ||| | | || || ||||||||||||||
Sbjct 8062733 GAAAAATGGATGTTAGAAGAACCAGACAGCTATGTACACATCATAGCACAACCAGGAGGA 8062792
Query 1232 GAAAATCTTTTAAAAAATACAC-TTGAAATTTG--TACTTTGACTTTAGCAAGAACAAAA 1288
||| | | | ||||| | | ||||||| | || ||||| |||| |||
Sbjct 8062793 GAAT-TATATGCAAAAACAATCATTGAAATGACCCTCCTAAAACTTTCCAAAGAG--AAA 8062849
Query 1289 ACAGCATTTGAATTAATACTTGAAAAAGCAGATAATACTAAACTAACTAACTTTGATC-- 1346
||||||| | ||| | || ||||| || ||| |||| |||||||
Sbjct 8062850 ACAGCATATAGCTTAGTGCTAGAAAATGC------TAC------AACTGACTTTGAAGAA 8062897
Query 1347 -TTGCAAATTCTAGAACATGTCAAATTTTTAGAATGCACGGATGGAATTGGATTAAAGTT 1405
||| |||| ||| | || | || || | | | ||||||||| |||||
Sbjct 8062898 ATTGAAAATGCTAAACTATATGCTATATTAAAAGGAAATGGATGGAATCCATACAAAGTA 8062957
Query 1406 TGTCACGCTATAGCATGTGTTTTAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTT 1465
|| || ||| |||| ||||| | |||| || |||||||| ||| | || ||
Sbjct 8062958 ATACAAGCAATAACATGCACATTAAACAAACAAATGGGAAAAAGAAAAACAATGCTACTT 8063017
Query 1466 CATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCTGTGGGT 1525
||||||||| |||||| || |||||| | || | || ||| || | | |
Sbjct 8063018 CATGGACCAAGAAGTACTGGCAAATCTTTAATCACACAGAAAATATTCCAGTTACTTGAT 8063077
Query 1526 AATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAA 1585
|||||| |||| || ||| ||| ||| ||||||| ||||| ||||||||||| ||||||
Sbjct 8063078 AATGTTTGTTGCTACAATCCAGTTAATTTAAATTTCCCATTCAATGACTGTACAAATAAA 8063137
Query 1586 AATTTAATTTGGATTGAAGAAGC-TGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGC 1644
||| |||| | | | |||||||| | | || || ||||| ||| |||||||| ||| |
Sbjct 8063138 AATATAATATAGGTAGAAGAAGCAAGCTCAC-TTAGTCAATGAGTAAATCAATTCAAA-C 8063195
Query 1645 AATTTGTTCTGGACAAACAATTAG-AATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTG 1703
||| | ||||||| | | || |||||| |||||||| ||||||| || |||||
Sbjct 8063196 AAT---TAATGGACAATCCGTCAGAAATTGAGCAAAAAGGAAAAGGAAACAAAATAATTG 8063252
Query 1704 AACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTG 1763
||||||||||| |||| ||||||||||| ||| |||| | || || ||||||| | ||
Sbjct 8063253 AACCAACTCCATTAATAATGACAACTAAAGAAGATATCA-AAAAGTTAGAATTGACTATG 8063311
Query 1764 AAGAAAGACCTGAACATACACAACCAATAAGAGACAGAATGTTGAACATTAAGTTA-GTA 1822
|| ||||| |||||| | | ||||||| | ||| ||| | ||||| ||| ||
Sbjct 8063312 AACTAAGACTTGAACAGATATAACCAATTAAAGATAGA------TATATTAATTTATATA 8063365
Query 1823 TGTAA-----GCTTCCAGGAGACTTTGGTTTGGTTGATAAAGAAGAATGGCCTTTAATAT 1877
|| | || ||||| |||||| || ||||||| || ||| || |||||
Sbjct 8063366 TGACAAAACCACTGAGTGGAGATTTTGGTCTGATTGATAATGATGAAATACC--AAATAT 8063423
Query 1878 GTGC--ATGGTTAGTTAAACATGGTTATGAATCAACCATGGCTAACTATACACATCATTG 1935
| | || | |||||| | ||||| ||||||| ||||| ||| | ||
Sbjct 8063424 ATTCAAATTCATGAAAAAACATAATCTTGAATGAACCATGAAAAACTACACAGAGACATG 8063483
Query 1936 GGGAAAAGTACCAGAATGGGATGAAAACTGGGCGGAGCCTAAAAT 1980
|||| ||| |||||||||| |||||||||||||| | |||||
Sbjct 8063484 GGGAGGAGTGTCAGAATGGGAAGAAAACTGGGCGGACTCAAAAAT 8063528
>seq46
Length=16939101
Score = 226 bits (250), Expect = 1e-55
Identities = 278/378 (74%), Gaps = 9/378 (2%)
Strand=Plus/Plus
Query 1421 TGTGTTTTAAATAGACAAGGTGGTAAA-AGAAATACAGTTCTTTTTCATGGACCAGCAAG 1479
||||| |||| | |||| || ||| ||||||||| |||| | || |||||||||||
Sbjct 9976887 TGTGTGCTAAACAAACAACTAGGAAAACAGAAATACAATTCTACTACAAGGACCAGCAAG 9976946
Query 1480 TACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCTG------TGGGTAATGTTGG 1533
||||||||| | || |||||| | | | ||| || | |||||||| ||
Sbjct 9976947 CACAGGAAAAAGCCTAATAGCTCAAAAAAAA--AAAAGGTGAATTAGTTGGTAATGTAGG 9977004
Query 1534 TTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAAT 1593
||| || ||| || | ||||| ||||||||||||||||| ||| ||| ||||| ||||
Sbjct 9977005 TTGCTACAATCCATCCAATGTTAATTTTCCATTTAATGATTGTTGCAACAAAAACGTAAT 9977064
Query 1594 TTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTC 1653
| ||| |||||||| ||| |||| || || | |||||| ||||| ||||| || ||
Sbjct 9977065 ATAGATAGAAGAAGCAGGTGACTTAGGGCAGCTAGTTAACCAATTCAAAGCTATCATGTC 9977124
Query 1654 TGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCC 1713
||||||| || ||| | |||||||||||||| ||||| || ||||||||| || |
Sbjct 9977125 AGGACAAAGCATAAGATTAGATCAAAAAGGTAAGGGAAGCAAATCAATTGAACCTACAAC 9977184
Query 1714 AGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACC 1773
|| || |||||| | ||||| | || || | || ||||| |||||||| ||||||
Sbjct 9977185 TGTCATAATGACATCAAATGAGGACATCACTGTAGTAAGAATCAGATGTGAAATAAGACC 9977244
Query 1774 TGAACATACACAACCAAT 1791
||||| || |||||||
Sbjct 9977245 TGAACCCACCAAACCAAT 9977262
>seq217
Length=4971029
Score = 172 bits (190), Expect = 2e-39
Identities = 182/240 (76%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 1554 TAAATTTTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTA 1613
|||| ||||||||||||||||| ||||||||| | | ||| | |||||| | || |
Sbjct 886296 TAAACTTTCCATTTAATGACTGCTGCAATAAAAACATCAAATGGGTAGAAGAACCAGGAA 886237
Query 1614 ACTTTGGTCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTG 1673
|||| || || ||||| || |||||||||||||| || || |||| || ||| |
Sbjct 886236 ACTTAGGACACCAAGTAAACCAATTTAAAGCAATCATGTCAGGGCAAAGCATAAGACCAG 886177
Query 1674 ATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATG 1733
|||| ||||| || ||||| || ||||| ||| ||| ||||| || |||||| | | ||
Sbjct 886176 ATCAGAAAGGAAAGGGAAGCAAACAAATCAAACTAACACCAGTGATCATGACATCCAGTG 886117
Query 1734 AAAATATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAA 1793
|| | || || | |||||||||||| |||||| || ||||||||| | | | |||||||
Sbjct 886116 AATACATTACTAATGTGAGAATTGGCTGTGAACTAAAACCTGAACACAGAGAGCCAATAA 886057
>seq82
Length=11943184
Score = 172 bits (190), Expect = 2e-39
Identities = 240/332 (72%), Gaps = 7/332 (2%)
Strand=Plus/Plus
Query 1464 TTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCATAGCACAAGCT-GTG 1522
|||| |||||||| || |||||||| | | || || ||| | | || | ||
Sbjct 8422278 TTCAAGGACCAGCTAGCACAGGAAAGAGTCTAATAGCACAAAAAAATGTGTGAGTTAGTT 8422337
Query 1523 GGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAAT 1582
|||||||| || ||||| || || | ||||||||||| ||||| ||||| || |||
Sbjct 8422338 GGTAATGTGGGCTGTTACAACCCATCTAATGTAAATTTCCCATTCAATGATTGCTGCAAC 8422397
Query 1583 AAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATTTAAA 1642
|||||| |||| ||||| ||||| || || || | || ||| |||| || ||||| |||
Sbjct 8422398 AAAAATATAATATGGATAGAAGAGGCAGGCAATCTAGGACAATAAGTAAACCAATTCAAA 8422457
Query 1643 GCAAT-TTGT--TCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAA 1699
||||| ||| ||| |||| || ||| | || |||||||| || ||||| ||| |
Sbjct 8422458 GCAATAATGTCATCT---CAAAGTATCAGACTAGACCAAAAAGGAAAGGGAAGCAAGTCA 8422514
Query 1700 ATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGGA 1759
|| ||||| ||||| || | |||||| | ||||| | ||| || | || || || |
Sbjct 8422515 ATAGAACCTACTCCTGTCACAATGACATCAAATGAGGACATACCATTAGTAAGGATCAGC 8422574
Query 1760 TGTGAAGAAAGACCTGAACATACACAACCAAT 1791
|||||| |||||||||||| || |||||||
Sbjct 8422575 TGTGAAATAAGACCTGAACACACCAAACCAAT 8422606
>seq170
Length=7020341
Score = 161 bits (178), Expect = 3e-36
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 1561 TCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGG 1620
|||||| ||||| || ||||||||| ||||||| || || || ||||||||||| ||
Sbjct 1687313 TCCATTCAATGATTGCTACAATAAAAACATAATTTGAATCGAGGAGGCTGGTAACTTAGG 1687372
Query 1621 TCAACAAGTTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAA 1680
|| | ||| |||||||| ||||| || || ||||||| |||||| | || |||||
Sbjct 1687373 ACAGCTAGTAAATCAATTCAAAGCTATCATGTCAGGACAAAGCATTAGACTAGACCAAAA 1687432
Query 1681 AGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATAT 1740
||| ||||| || || | ||||| ||||||||| || |||||| | ||||| | ||
Sbjct 1687433 AGGAAAAGGCAGCAAATCAGTTGAATGAACTCCAGTCATAATGACATCCAATGAGGACAT 1687492
Query 1741 AACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATAC 1782
||| ||| ||||| || |||||| ||||||||| |||||
Sbjct 1687493 AACTTGTGTAAGAATCGGCTGTGAAATAAGACCTGAGCATAC 1687534
>seq41
Length=17853887
Score = 159 bits (176), Expect = 1e-35
Identities = 248/344 (72%), Gaps = 9/344 (3%)
Strand=Plus/Plus
Query 1428 TAAATAGACAAGGTGGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAA 1487
|||| |||||| || |||| |||||| | | | |||| || || | ||||| |
Sbjct 9096220 TAAACAGACAAATGGGGAAAACAAATACCATCTTACTGAATGGTCCGGCTGGCACAGGCA 9096279
Query 1488 AATCTATCATTGCTCAAGCCATAGCACAAGCTG-TGGGTAATGTTGGTTGTTATAATGCA 1546
|||| | || || | | ||| || |||| | ||||||| ||||||||| || ||
Sbjct 9096280 CATCTTTGATAGCACTAAAAATATGCCA-GCTGGTTGGTAATGCTGGTTGTTACAACCCA 9096338
Query 1547 GCAAATGTAAATTTTCCATTTAATGACTGTACCAATAAAAATT-TAATTTGGATTGAAGA 1605
| ||| | |||||||| | ||| |||||| ||||||| | |||| ||| | |||||
Sbjct 9096339 GAAAACATCTCATTTCCATTCAGTGATTGTACCCATAAAAAATATAATATGGGTAGAAGA 9096398
Query 1606 AGCTGGTAACTTT--GGTCAACAAGTTAATCAATTTAAAGCAATTTGT-TCTGGACAAAC 1662
||||| ||||| || || |||| || ||||| ||| ||||| | || |||||||
Sbjct 9096399 GGCTGGAAACTTATAGGACAGTAAGTAAACCAATTCAAA-CAATTAATGTCAGGACAAAT 9096457
Query 1663 AATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAA-ATTGAACCAACTCCAGTAATTA 1721
| |||| ||| |||||||| |||| | ||| | ||| | |||||||||||||| |
Sbjct 9096458 CGTGAGAACTGACCAAAAAGGAAAAG-ACTTAAAAACTATTAAGCCAACTCCAGTAATCA 9096516
Query 1722 TGACAACTAATGAAAATATAACAATTGTGAGAATTGGATGTGAA 1765
||||||||||||||||||| || || ||| |||| ||||||
Sbjct 9096517 TGACAACTAATGAAAATATTACTGAAGTCAGAGTTGGTTGTGAA 9096560
>seq410
Length=524141
Score = 140 bits (154), Expect = 1e-29
Identities = 242/345 (70%), Gaps = 9/345 (3%)
Strand=Plus/Plus
Query 1442 GGTAAAAGAAATACAGTTCTTTTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCT 1501
||||| ||||| || | | || |||| |||||||| || || |||||| |||| ||
Sbjct 48809 GGTAAGAGAAACACCATCTTACTTAATGGTCCAGCAAGCACTGGTAAATCTCTCATAGCA 48868
Query 1502 CA--AGCCATAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATT 1559
|| ||| | || | | ||||||||| || | ||| |||| || || |
Sbjct 48869 CAGAAGCTCTGTGACTTAGTTTA--TAATGTTGGCTGCTC-AATCCAGCTAACATATCAT 48925
Query 1560 TTCCATTTAATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTG 1619
|||| || |||||||| | | |||||| | |||||| || | | || || ||| | |
Sbjct 48926 TTCCTTTCAATGACTGCATCCGCAAAAATATTATTTGGGTTTAGAAGGCAGGAAACCTAG 48985
Query 1620 GTCAACAAGTTAATCAATTTAAAGCAATT--TGTTCTGGACAAACAATTAGAATTGATCA 1677
| || |||||||||||||| ||| || | |||| || || || ||||||| |||||
Sbjct 48986 GACAGCAAGTTAATCAATTCAAA-CAGCTAATGTTAGGG-CAGGCAGTTAGAATAGATCA 49043
Query 1678 AAAAGGTAAAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAA 1737
|||||| |||||||| || || |||| ||| | ||||| || || || ||||| ||
Sbjct 49044 AAAAGGGAAAGGAAGCAAAATCATAGAACTAACAGCTGTAATCATAACCACCAATGAGAA 49103
Query 1738 TATAACAATTGTGAGAATTGGATGTGAAGAAAGACCTGAACATAC 1782
||||| || |||| ||| |||| | ||||||| |||||||
Sbjct 49104 CATAACTGAGGTCAGAACTGGCTGTGTATTAAGACCTAAACATAC 49148
>seq275
Length=3308571
Score = 129 bits (142), Expect = 2e-26
Identities = 171/231 (74%), Gaps = 5/231 (2%)
Strand=Plus/Plus
Query 1569 ATGACTGTACCAATAAAAATT-TAATTTGGATTGAAGAAGCTGG-TAACTTTGGTCAACA 1626
||||||||||||||||||| | || ||| | |||||||| | | ||| | ||| ||
Sbjct 3102934 ATGACTGTACCAATAAAAAACATTATATGGGTAGAAGAAGCAAGCTCACTAAG-TCAGCA 3102992
Query 1627 AGTTAATCAATTTAAAGCAATTTGTTC-TGGACAAACAATTAGAATTGATCAAAAAGGTA 1685
|| | ||||| || |||| | ||||||| | | ||||||||||| ||||| |
Sbjct 3102993 AGGAAGCCAATTCAA-GCAACTAACGAGTGGACAATTAGTGAGAATTGATCAGAAAGGAA 3103051
Query 1686 AAGGAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAA 1745
| ||||| || || |||||||| ||| |||| |||| ||||||| || | |||||||
Sbjct 3103052 AGGGAAGCAAAACAACAGAACCAACACCACTAATAATGATAACTAATAAAGACATAACAA 3103111
Query 1746 TTGTGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAAGAG 1796
|| |||| ||| |||||| |||||| || || ||| ||||||||| ||
Sbjct 3103112 AAGTAAGAACTGGCTGTGAATTAAGACCAGAGCACACATAACCAATAAAAG 3103162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16921247237520
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