Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001662.1 Length=4801 Score E Sequences producing significant alignments: (Bits) Value seq62 80.6 8e-12 seq39 80.6 8e-12 >seq62 Length=14134332 Score = 80.6 bits (88), Expect = 8e-12 Identities = 166/247 (67%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 2730 CAAGTAATGACACCTTGGTATATAGTAGATAGCAACGCTTGGGGTGTATGGATGAGTCCT 2789 ||| || | || || |||| || |||| | || || | ||| || ||||||| ||| Sbjct 3785202 CAAATACTAACGCCATGGTCACTAATAGACTGTAATGCCTAGGGAGTTTGGATGAATCCA 3785261 Query 2790 AAAGACTTTCAACAAATGAAAACACTGTGTAGTGAAATTAGTTTGGTTACTTTGGAACAA 2849 |||||||||||| | | |||| || ||||| | | || || | || |||||| Sbjct 3785262 GTAGACTTTCAACATTTAACAACAAGATGCAGTGACTTAAACTTAGTATCATTAGAACAA 3785321 Query 2850 GAAATAGACAATGTAACCATAAAAACTGTAACAGAAACCAACCAAGGTAACGCATCTACC 2909 ||| | || || | || ||||||||| ||||||| | || | ||| Sbjct 3785322 GAACTGTTTAACTTAGCAATTAAAACTGTATCAGAAACAGGACCAGACAGAGCAAAAGTA 3785381 Query 2910 AAGCAATTCAACAATGACTTAACTGCGTCGTTACAGGTTGCTTTAGATACTAACAACATA 2969 ||||||| || |||||| |||| || | | || || ||| |||||||||||| ||| Sbjct 3785382 AAGCAATATAATAATGACCTAACAGCAACAATGCAAGTAGCTGAAGATACTAACAATATA 3785441 Query 2970 CTGCCAT 2976 |||||| Sbjct 3785442 ATGCCAT 3785448 >seq39 Length=18005330 Score = 80.6 bits (88), Expect = 8e-12 Identities = 165/242 (68%), Gaps = 14/242 (6%) Strand=Plus/Plus Query 2741 ACCTTGGTATATAGTAGATAGCAACGCTTGGGGTGTATGGATGAGTCCTAAAGACTTTCA 2800 ||| |||| |||| | || | ||| | |||||||||||||||| |||| ||| ||| | Sbjct 8067454 ACCATGGTCTATAATTAATTGTAACTCATGGGGTGTATGGATGAATCCTGCAGATTTTTA 8067513 Query 2801 ACAAATGAAAACACTGTGTAGTGAAATTAGTTTGGTTACTTTGGAACAAGAAATAGACAA 2860 ||| | | ||| | || ||| | ||| | | | | | ||||||||| | | Sbjct 8067514 ACATTTAACCACAGTATGCAGTAATGTTAATCTTATGTCACTAGAACAAGAATT-----A 8067568 Query 2861 TGTAACC---ATAAAAACTGTAACAGAAACCA-ACC--AAGGTAACGCATCTACCAAGCA 2914 ||||||| || ||| ||||||||||| | ||| ||||| ||| ||||| Sbjct 8067569 TGTAACCTAGCTATTAACAGTAACAGAAACAAGACCTGAAGGT---GCAAAGGTAAAGCA 8067625 Query 2915 ATTCAACAATGACTTAACTGCGTCGTTACAGGTTGCTTTAGATACTAACAACATACTGCC 2974 || |||||||||||||| || | | || || ||||||| |||||||| |||| Sbjct 8067626 ATATAACAATGACTTAACAGCAACAAAGTAAGTAGCAGAAGATACTGACAACATAATGCC 8067685 Query 2975 AT 2976 || Sbjct 8067686 AT 8067687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15250882060140