Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001662.1
Length=4801
Score E
Sequences producing significant alignments: (Bits) Value
seq62 80.6 8e-12
seq39 80.6 8e-12
>seq62
Length=14134332
Score = 80.6 bits (88), Expect = 8e-12
Identities = 166/247 (67%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 2730 CAAGTAATGACACCTTGGTATATAGTAGATAGCAACGCTTGGGGTGTATGGATGAGTCCT 2789
||| || | || || |||| || |||| | || || | ||| || ||||||| |||
Sbjct 3785202 CAAATACTAACGCCATGGTCACTAATAGACTGTAATGCCTAGGGAGTTTGGATGAATCCA 3785261
Query 2790 AAAGACTTTCAACAAATGAAAACACTGTGTAGTGAAATTAGTTTGGTTACTTTGGAACAA 2849
|||||||||||| | | |||| || ||||| | | || || | || ||||||
Sbjct 3785262 GTAGACTTTCAACATTTAACAACAAGATGCAGTGACTTAAACTTAGTATCATTAGAACAA 3785321
Query 2850 GAAATAGACAATGTAACCATAAAAACTGTAACAGAAACCAACCAAGGTAACGCATCTACC 2909
||| | || || | || ||||||||| ||||||| | || | |||
Sbjct 3785322 GAACTGTTTAACTTAGCAATTAAAACTGTATCAGAAACAGGACCAGACAGAGCAAAAGTA 3785381
Query 2910 AAGCAATTCAACAATGACTTAACTGCGTCGTTACAGGTTGCTTTAGATACTAACAACATA 2969
||||||| || |||||| |||| || | | || || ||| |||||||||||| |||
Sbjct 3785382 AAGCAATATAATAATGACCTAACAGCAACAATGCAAGTAGCTGAAGATACTAACAATATA 3785441
Query 2970 CTGCCAT 2976
||||||
Sbjct 3785442 ATGCCAT 3785448
>seq39
Length=18005330
Score = 80.6 bits (88), Expect = 8e-12
Identities = 165/242 (68%), Gaps = 14/242 (6%)
Strand=Plus/Plus
Query 2741 ACCTTGGTATATAGTAGATAGCAACGCTTGGGGTGTATGGATGAGTCCTAAAGACTTTCA 2800
||| |||| |||| | || | ||| | |||||||||||||||| |||| ||| ||| |
Sbjct 8067454 ACCATGGTCTATAATTAATTGTAACTCATGGGGTGTATGGATGAATCCTGCAGATTTTTA 8067513
Query 2801 ACAAATGAAAACACTGTGTAGTGAAATTAGTTTGGTTACTTTGGAACAAGAAATAGACAA 2860
||| | | ||| | || ||| | ||| | | | | | ||||||||| | |
Sbjct 8067514 ACATTTAACCACAGTATGCAGTAATGTTAATCTTATGTCACTAGAACAAGAATT-----A 8067568
Query 2861 TGTAACC---ATAAAAACTGTAACAGAAACCA-ACC--AAGGTAACGCATCTACCAAGCA 2914
||||||| || ||| ||||||||||| | ||| ||||| ||| |||||
Sbjct 8067569 TGTAACCTAGCTATTAACAGTAACAGAAACAAGACCTGAAGGT---GCAAAGGTAAAGCA 8067625
Query 2915 ATTCAACAATGACTTAACTGCGTCGTTACAGGTTGCTTTAGATACTAACAACATACTGCC 2974
|| |||||||||||||| || | | || || ||||||| |||||||| ||||
Sbjct 8067626 ATATAACAATGACTTAACAGCAACAAAGTAAGTAGCAGAAGATACTGACAACATAATGCC 8067685
Query 2975 AT 2976
||
Sbjct 8067686 AT 8067687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15250882060140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |