Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001510.1 Length=5149 Score E Sequences producing significant alignments: (Bits) Value seq197 259 2e-65 seq30416 163 9e-37 seq6912 104 8e-19 seq7943 89.7 2e-14 seq15215 82.4 2e-12 >seq197 Length=2052443 Score = 259 bits (286), Expect = 2e-65 Identities = 296/395 (75%), Gaps = 2/395 (1%) Strand=Plus/Minus Query 1384 TTAAAGTTTGCCATGCTATTTGCTGTGTTTTAAACAGACAAGGAGGCAAAAGAAATACTG 1443 ||||||| |||||||| ||||| |||| | |||| ||| ||||| || || Sbjct 1661413 TTAAAGTAATGCATGCTATAATGTGTGTGCTAAATAAACAATTAGGAAAAAGGAACACCA 1661354 Query 1444 TTTTATT-TCATGGACCAGCCAGCACAGGCAAATCTATTATTGCACAAGCCATAGCACAA 1502 | ||| | ||| |||||||| |||||||| ||| | | ||||||||| || || Sbjct 1661353 TCTTACTATCA-GGACCAGCAAGCACAGGAAAAAGTCTGATTGCACAAAAAATTTGTGAA 1661295 Query 1503 GCAGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGT 1562 |||||| ||||| || ||||| || || |||||||||||||||||| | |||||| Sbjct 1661294 TTAGTTGGTAATGTAGGATGCTACAACCCAAGCAATGTAAACTTTCCATTCAGTGACTGC 1661235 Query 1563 ACCAACAAGAACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAG 1622 || ||| ||| | || ||| | |||||||| | ||||| ||||| ||||||||||| Sbjct 1661234 TGCAGCAAAAACATAATATGGATTGAAGAAGCAAGAAACTTAGGACACCAAGTAAACCAA 1661175 Query 1623 TTTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAA 1682 ||||||||||| || || ||| | || | | ||||||||||||||||| |||||| Sbjct 1661174 TTTAAAGCCATAATGTCAGGACAATCAATCAGACTAGATCAAAAAGGAAAAGGAAGCAAA 1661115 Query 1683 CAGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATA 1742 || ||||||||||||||||| ||||| ||||||| | || ||||| || |||||| Sbjct 1661114 TCAATGGAACCAACACCAGTCATAATGACATCAAATGAAGATATAACAGTAGTAAGAATA 1661055 Query 1743 GGCTGCGAAGAAAGACCAGAACACACTCAACCAAT 1777 || || ||| |||||||||||||| ||||||| Sbjct 1661054 GGATGTGAAACAAGACCAGAACACAGCGAACCAAT 1661020 >seq30416 Length=3671673 Score = 163 bits (180), Expect = 9e-37 Identities = 218/297 (73%), Gaps = 7/297 (2%) Strand=Plus/Minus Query 1505 AGTTGGCAATGTTGGTTGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTAC 1564 |||||| ||||| || |||||||| || | |||||||||||||| || ||||| || Sbjct 1912958 AGTTGGTAATGTAGGATGCTATAACCCATCTAATGTAAACTTTCCTTTCAATGATTGATG 1912899 Query 1565 CAACAAGAA-CTTGATTTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGT 1623 ||| || || | | |||| | | |||||||| || ||||| ||||| ||||||||| | Sbjct 1912898 CAATAAAAAACATAATTTAGATGGAAGAAGCAGGGAACTTAGGACA---AGTAAACCAAT 1912842 Query 1624 TTAAAGCCATTTGCTCTGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAAC 1683 ||||||| ||| || || |||| |||| | |||||||||| ||||||||| ||| Sbjct 1912841 TTAAAGCAATTATGTCAGGACAAAGTATTAACCCGGATCAAAAAGAAAAAGGCAGTAAAT 1912782 Query 1684 AGATTGAACCAACACCAGTCATCATGACCACAAATGAGAACATTACAGTGGTCAGAATAG 1743 ||||| ||||| ||||| || |||| | ||||| | || || | ||||| | Sbjct 1912781 CAATTGAGCCAACTCCAGTAATGATGATATCTAATGAAGATATAACTTGAATAAGAATTG 1912722 Query 1744 GCTG-CGAAGAAAGACCAGAACACACTCAACCAATCAGAGACAG-AATGCTTAACAT 1798 |||| ||| ||||||||| || | | ||||||| | | | || ||| ||||||| Sbjct 1912721 GCTGTAGAAATAAGACCAGAGCATATTGAACCAATAAAACAAAGCTATG-TTAACAT 1912666 >seq6912 Length=926260 Score = 104 bits (114), Expect = 8e-19 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1512 AATGTTGGTTGCTATAATGCAGCCAATGTAAACTTTCCATTTAATGACTGTACCAACAAG 1571 |||||||| | || ||| || | |||||||||||||| || ||||| | | ||||| Sbjct 471631 AATGTTGGGTTGTACAATCCATCAAATGTAAACTTTCCTTTCAATGATTATTGCAACAGA 471572 Query 1572 AACTTGATTTGGGTAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCC 1631 ||| | | ||| ||||||| | | ||||| || ||| | | |||| |||||||| Sbjct 471571 AACATATTGTGGATAGAAGAGGTAAGAAACTTAGGCCAGTTAATGTACCAATTTAAAGCA 471512 Query 1632 ATTTGCTCTGGTCAAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAA 1691 || || || ||| |||| | | ||| |||| |||||||||||||| |||||| Sbjct 471511 ATAATGTCAGGACAATGTATTAGGCTAGATTCAAAAAGAAAAGGCAGCAAATCCATTGAA 471452 Query 1692 CCAACACCAG 1701 |||| ||||| Sbjct 471451 CCAAAACCAG 471442 >seq7943 Length=141820 Score = 89.7 bits (98), Expect = 2e-14 Identities = 240/364 (66%), Gaps = 30/364 (8%) Strand=Plus/Plus Query 1414 TAAACAGACAAGGAGGCAAAAGAAA-------TACTGTTTTATTTCATGGACCAGCCAGC 1466 |||||||| || ||| |||||||| ||| | ||| | || |||||| |||| Sbjct 121561 TAAACAGATAACTAGG-AAAAGAAAATATTACTACAATATTACTACAAGGACCACTCAGC 121619 Query 1467 ACAGGCAAATCTATTATT-GCACAAGCCATAGCACAAGCAGTTGGCAATGTTGGTTGCTA 1525 ||||| ||| ||| | |||||| ||| | |||||| ||||| | | ||| Sbjct 121620 ACAGGAAAAAAGTTTAATAGCACAATAAATATGTGAGTTAGTTGGTAATGTAAGATACTA 121679 Query 1526 TAATGCAGCCAATGTAAACTTTCCATTTAATGACTG-TACCAACAAGAACTTGATTTGGG 1584 || | || | |||| ||||||| ||| | || ||| | || ||| | || | | Sbjct 121680 TAGTACATCTTATGTTAACTTTC-----AATCATTGCTACAATAAAAAACATAATATAGA 121734 Query 1585 TAGAAGAAGCTGGTAACTTTGGACAGCAAGTAAACCAGTTTAAAGCCATTTGCTCTGGTC 1644 |||||||||| | ||||| ||||| || |||||| || || || | Sbjct 121735 TAGAAGAAGCAGAAAACTTAGGACA-------AA-----TTAAAGTAATAATGTCAGGAC 121782 Query 1645 AAACTATTCGCATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCA 1704 ||| |||| | | || ||||| |||||||||||| ||||||||||| ||||| Sbjct 121783 AAAGTATTAGACTAAATAAAAAA---AAAGGCAGCAAATTAATTGAACCAACTCCAGTAG 121839 Query 1705 TCATGACCACAAATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAGACCAGAAC 1764 | ||||| ||||| ||||||| |||||||| | || ||| ||| |||||| Sbjct 121840 TTATGACTTTCAATGAATACATTACTTGTGTCAGAATTGAATGTGAAATTAGAGCAGAAC 121899 Query 1765 ACAC 1768 | || Sbjct 121900 ATAC 121903 >seq15215 Length=4605142 Score = 82.4 bits (90), Expect = 2e-12 Identities = 99/134 (74%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 1656 ATTGATCAAAAAGGAAAAGGCAGCAAACAGATTGAACCAACACCAGTCATCATGACCACA 1715 || || |||||||||||| | || | | | |||||||| ||||| || |||||||| Sbjct 4354693 ATAGACCAAAAAGGAAAAAGAAGTAGAACTACTGAACCAATTCCAGTAATAATGACCACT 4354752 Query 1716 AATGAGAACATTACAGTGGTCAGAATAGGCTGCGAAGAAAG--ACCAGAACACACTCAAC 1773 ||||| || || | | ||||||||| ||||| ||| ||| || ||| | ||| ||| Sbjct 4354753 AATGAAAATATCAACGAGGTCAGAATTGGCTGTGAACTAAGGTTCCTGAATATACTGAAC 4354812 Query 1774 CAATCAGAGACAGA 1787 |||| | | ||||| Sbjct 4354813 CAATTAAACACAGA 4354826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16358361013740