Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17]
35,974 sequences; 3,174,693,010 total letters
Query= NC_001539.1
Length=5323
Score E
Sequences producing significant alignments: (Bits) Value
seq197 251 2e-63
seq30416 201 4e-48
seq15215 105 2e-19
seq6912 100 1e-17
seq7943 95.1 4e-16
>seq197
Length=2052443
Score = 251 bits (278), Expect = 2e-63
Identities = 464/672 (69%), Gaps = 19/672 (3%)
Strand=Plus/Minus
Query 1153 TAAAAGAGTAACATCACCTGAAGACTGGATGATGTTACAACCAGATAGTTATATTGAAAT 1212
||||||| || |||| ||| |||||||| | | | ||||| || || || ||
Sbjct 1661649 TAAAAGAATAGTATCAATAGAAAACTGGATGGTTGAAGAGCCAGAGAGCTACATACAACA 1661590
Query 1213 GATGGCACAACCAGGAGGTGAAAATCTTTTAAAAAATACACTTGAAAT--TTGTACTTTG 1270
|| ||| | |||||||| |||| | |||||| | | | ||||| | ||||| |
Sbjct 1661589 CATTGCAAACCCAGGAGGAGAAATAATAATAAAAACCATAATGGAAATGGTACTACTTAG 1661530
Query 1271 ACTTTAGCAAGAACAAAAACAGCATTTGAATTAATACTTGAAAAAGCAGATAATACTAAA 1330
| | |||| | | ||||| | |||| |||| ||||||| ||| | || ||
Sbjct 1661529 AATG--GCAAAATTTATGACAGCCTATGAACTAATTGCAGAAAAAG--GATCAGACAAAC 1661474
Query 1331 CTAACTAACTTTGATCTTGCAAATTCTAGAACATGTCAAATTTTTAGAATGCACGGATGG 1390
| ||| |||| | |||| ||| | || |||| | ||| | || |
Sbjct 1661473 CAAACCAACTA-------GAAAATACTAAAGTATTCAAAATACTAAGACTAAACAACTAC 1661421
Query 1391 AATTGGATTAAAGTTTGTCACGCTATAGCATGTGTTTTAAATAGACAAGGTGGTAAAAGA 1450
||| ||||||| || |||||| ||||| |||||| |||| || |||||
Sbjct 1661420 AATCCATTTAAAGTAATGCATGCTATAATGTGTGTGCTAAATAAACAATTAGGAAAAAGG 1661361
Query 1451 AATACAGTTCTT--TTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCA 1508
|| || | ||| | ||| ||||||||||| ||||||||| | | ||||| ||| |
Sbjct 1661360 AACACCAT-CTTACTATCA-GGACCAGCAAGCACAGGAAAAAGTCTGATTGCACAAAAAA 1661303
Query 1509 TAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTA 1568
| || || |||||||| || || || || || |||||||| |||||||| |
Sbjct 1661302 TTTGTGAATTAGTTGGTAATGTAGGATGCTACAACCCAAGCAATGTAAACTTTCCATTCA 1661243
Query 1569 ATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAG 1628
|||||| || ||||| |||| |||||||||||||| | ||||| || || ||||
Sbjct 1661242 GTGACTGCTGCAGCAAAAACATAATATGGATTGAAGAAGCAAGAAACTTAGGACACCAAG 1661183
Query 1629 TTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAG 1688
| || ||||||||||| || || |||||| |||| ||| | ||||||||||| ||||
Sbjct 1661182 TAAACCAATTTAAAGCCATAATGTCAGGACAATCAATCAGACTAGATCAAAAAGGAAAAG 1661123
Query 1689 GAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTG 1748
|||| || ||| |||||||| ||||| || |||||| | |||||| |||||||| | |
Sbjct 1661122 GAAGCAAATCAATGGAACCAACACCAGTCATAATGACATCAAATGAAGATATAACAGTAG 1661063
Query 1749 TGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAAGAGACAGAATGT-TG 1807
| ||||| ||||||||| |||||| ||||| | |||||||| | || | |||| |
Sbjct 1661062 TAAGAATAGGATGTGAAACAAGACCAGAACACAGCGAACCAATATAACACCG-ATGTGTA 1661004
Query 1808 AACATTAAGTTA 1819
||||| || |||
Sbjct 1661003 AACATCAAATTA 1660992
>seq30416
Length=3671673
Score = 201 bits (222), Expect = 4e-48
Identities = 230/301 (76%), Gaps = 11/301 (4%)
Strand=Plus/Minus
Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579
|| |||||||| || || ||||| || | |||||||| ||||| || ||||| || |
Sbjct 1912957 GTTGGTAATGTAGGATGCTATAACCCATCTAATGTAAACTTTCCTTTCAATGATTGATGC 1912898
Query 1580 AATAAAAATT-TAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATT 1638
|||||||| |||||| ||| |||||||| || ||||| || |||||| || |||||
Sbjct 1912897 AATAAAAAACATAATTTAGATGGAAGAAGCAGGGAACTTAGG---ACAAGTAAACCAATT 1912841
Query 1639 TAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCA 1698
|||||||||| || ||||||| |||| |||||||||| ||||| |||||
Sbjct 1912840 TAAAGCAATTATGTCAGGACAAAGTATTAACCCGGATCAAAAAGAAAAAGGCAGTAAATC 1912781
Query 1699 AATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTG--TGAGAATT 1756
|||||| |||||||||||||| |||| | |||||||| ||||||| ||| | ||||||
Sbjct 1912780 AATTGAGCCAACTCCAGTAATGATGATATCTAATGAAGATATAAC--TTGAATAAGAATT 1912723
Query 1757 GGATGT-GAAGAAAGACCTGAACATACACAACCAATAAGAGACAG-AATGTTGAACATTA 1814
|| ||| ||| |||||| || |||| ||||||||| | | || ||||| ||||| |
Sbjct 1912722 GGCTGTAGAAATAAGACCAGAGCATATTGAACCAATAAAACAAAGCTATGTT-AACATAA 1912664
Query 1815 A 1815
|
Sbjct 1912663 A 1912663
>seq15215
Length=4605142
Score = 105 bits (116), Expect = 2e-19
Identities = 118/154 (77%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 1651 TTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAAC 1710
||| |||||| || | ||| || |||||||| ||| |||||| | ||||||||
Sbjct 4354674 TTCAGGACAAGCAGACAAAATAGACCAAAAAGGAAAAAGAAGTAGAACTACTGAACCAAT 4354733
Query 1711 TCCAGTAATTATGACAACTAATGAAAATAT-AACAATTGTGAGAATTGGATGTGAAGAAA 1769
||||||||| ||||| |||||||||||||| ||| | || |||||||| |||||| ||
Sbjct 4354734 TCCAGTAATAATGACCACTAATGAAAATATCAACGA-GGTCAGAATTGGCTGTGAACTAA 4354792
Query 1770 G--ACCTGAACATACACAACCAATAAGAGACAGA 1801
| |||||| |||| ||||||| | | |||||
Sbjct 4354793 GGTTCCTGAATATACTGAACCAATTAAACACAGA 4354826
>seq6912
Length=926260
Score = 100 bits (110), Expect = 1e-17
Identities = 146/206 (71%), Gaps = 8/206 (4%)
Strand=Plus/Minus
Query 1525 TAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAA 1584
||||||||| | || ||| || |||||||||| ||||| || ||||| | | ||| |
Sbjct 471632 TAATGTTGGGTTGTACAATCCATCAAATGTAAACTTTCCTTTCAATGATTATTGCAACAG 471573
Query 1585 AAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAAT----CAATTTA 1640
||| || | ||||| ||||| | | ||||| || || |||||| |||||||
Sbjct 471572 AAACATATTGTGGATAGAAGAGGTAAGAAACTTAGGCCA----GTTAATGTACCAATTTA 471517
Query 1641 AAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAA 1700
||||||| || |||||| ||||| | ||| |||| | ||||| || || |
Sbjct 471516 AAGCAATAATGTCAGGACAATGTATTAGGCTAGATTCAAAAAGAAAAGGCAGCAAATCCA 471457
Query 1701 TTGAACCAACTCCAGTAATTATGACA 1726
||||||||| |||| || |||||||
Sbjct 471456 TTGAACCAAAACCAGGAAATATGACA 471431
>seq7943
Length=141820
Score = 95.1 bits (104), Expect = 4e-16
Identities = 179/264 (68%), Gaps = 21/264 (8%)
Strand=Plus/Plus
Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579
|| |||||||| | | |||| | || | |||| || |||| ||| | || |
Sbjct 121660 GTTGGTAATGTAAGATACTATAGTACATCTTATGTTAACTTTC-----AATCATTGCTAC 121714
Query 1580 AATAAAAATT-TAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATT 1638
|||||||| |||| | ||| |||||||| | ||||| || ||| |
Sbjct 121715 AATAAAAAACATAATATAGATAGAAGAAGCAGAAAACTTAGGACAAA------------T 121762
Query 1639 TAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCA 1698
||||| ||| || ||||||| |||||| | || ||||| ||||| || ||
Sbjct 121763 TAAAGTAATAATGTCAGGACAAAGTATTAGACTAAATAAAAAA---AAAGGCAGCAAATT 121819
Query 1699 AATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGG 1758
||||||||||||||||||| ||||||| |||||| | || || ||| |||||||
Sbjct 121820 AATTGAACCAACTCCAGTAGTTATGACTTTCAATGAATACATTACTTGTGTCAGAATTGA 121879
Query 1759 ATGTGAAGAAAGACCTGAACATAC 1782
||||||| ||| | ||||||||
Sbjct 121880 ATGTGAAATTAGAGCAGAACATAC 121903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 16914941932080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |