Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001539.1 Length=5323 Score E Sequences producing significant alignments: (Bits) Value seq197 251 2e-63 seq30416 201 4e-48 seq15215 105 2e-19 seq6912 100 1e-17 seq7943 95.1 4e-16 >seq197 Length=2052443 Score = 251 bits (278), Expect = 2e-63 Identities = 464/672 (69%), Gaps = 19/672 (3%) Strand=Plus/Minus Query 1153 TAAAAGAGTAACATCACCTGAAGACTGGATGATGTTACAACCAGATAGTTATATTGAAAT 1212 ||||||| || |||| ||| |||||||| | | | ||||| || || || || Sbjct 1661649 TAAAAGAATAGTATCAATAGAAAACTGGATGGTTGAAGAGCCAGAGAGCTACATACAACA 1661590 Query 1213 GATGGCACAACCAGGAGGTGAAAATCTTTTAAAAAATACACTTGAAAT--TTGTACTTTG 1270 || ||| | |||||||| |||| | |||||| | | | ||||| | ||||| | Sbjct 1661589 CATTGCAAACCCAGGAGGAGAAATAATAATAAAAACCATAATGGAAATGGTACTACTTAG 1661530 Query 1271 ACTTTAGCAAGAACAAAAACAGCATTTGAATTAATACTTGAAAAAGCAGATAATACTAAA 1330 | | |||| | | ||||| | |||| |||| ||||||| ||| | || || Sbjct 1661529 AATG--GCAAAATTTATGACAGCCTATGAACTAATTGCAGAAAAAG--GATCAGACAAAC 1661474 Query 1331 CTAACTAACTTTGATCTTGCAAATTCTAGAACATGTCAAATTTTTAGAATGCACGGATGG 1390 | ||| |||| | |||| ||| | || |||| | ||| | || | Sbjct 1661473 CAAACCAACTA-------GAAAATACTAAAGTATTCAAAATACTAAGACTAAACAACTAC 1661421 Query 1391 AATTGGATTAAAGTTTGTCACGCTATAGCATGTGTTTTAAATAGACAAGGTGGTAAAAGA 1450 ||| ||||||| || |||||| ||||| |||||| |||| || ||||| Sbjct 1661420 AATCCATTTAAAGTAATGCATGCTATAATGTGTGTGCTAAATAAACAATTAGGAAAAAGG 1661361 Query 1451 AATACAGTTCTT--TTTCATGGACCAGCAAGTACAGGAAAATCTATCATTGCTCAAGCCA 1508 || || | ||| | ||| ||||||||||| ||||||||| | | ||||| ||| | Sbjct 1661360 AACACCAT-CTTACTATCA-GGACCAGCAAGCACAGGAAAAAGTCTGATTGCACAAAAAA 1661303 Query 1509 TAGCACAAGCTGTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTA 1568 | || || |||||||| || || || || || |||||||| |||||||| | Sbjct 1661302 TTTGTGAATTAGTTGGTAATGTAGGATGCTACAACCCAAGCAATGTAAACTTTCCATTCA 1661243 Query 1569 ATGACTGTACCAATAAAAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAG 1628 |||||| || ||||| |||| |||||||||||||| | ||||| || || |||| Sbjct 1661242 GTGACTGCTGCAGCAAAAACATAATATGGATTGAAGAAGCAAGAAACTTAGGACACCAAG 1661183 Query 1629 TTAATCAATTTAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAG 1688 | || ||||||||||| || || |||||| |||| ||| | ||||||||||| |||| Sbjct 1661182 TAAACCAATTTAAAGCCATAATGTCAGGACAATCAATCAGACTAGATCAAAAAGGAAAAG 1661123 Query 1689 GAAGTAAGCAAATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTG 1748 |||| || ||| |||||||| ||||| || |||||| | |||||| |||||||| | | Sbjct 1661122 GAAGCAAATCAATGGAACCAACACCAGTCATAATGACATCAAATGAAGATATAACAGTAG 1661063 Query 1749 TGAGAATTGGATGTGAAGAAAGACCTGAACATACACAACCAATAAGAGACAGAATGT-TG 1807 | ||||| ||||||||| |||||| ||||| | |||||||| | || | |||| | Sbjct 1661062 TAAGAATAGGATGTGAAACAAGACCAGAACACAGCGAACCAATATAACACCG-ATGTGTA 1661004 Query 1808 AACATTAAGTTA 1819 ||||| || ||| Sbjct 1661003 AACATCAAATTA 1660992 >seq30416 Length=3671673 Score = 201 bits (222), Expect = 4e-48 Identities = 230/301 (76%), Gaps = 11/301 (4%) Strand=Plus/Minus Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579 || |||||||| || || ||||| || | |||||||| ||||| || ||||| || | Sbjct 1912957 GTTGGTAATGTAGGATGCTATAACCCATCTAATGTAAACTTTCCTTTCAATGATTGATGC 1912898 Query 1580 AATAAAAATT-TAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATT 1638 |||||||| |||||| ||| |||||||| || ||||| || |||||| || ||||| Sbjct 1912897 AATAAAAAACATAATTTAGATGGAAGAAGCAGGGAACTTAGG---ACAAGTAAACCAATT 1912841 Query 1639 TAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCA 1698 |||||||||| || ||||||| |||| |||||||||| ||||| ||||| Sbjct 1912840 TAAAGCAATTATGTCAGGACAAAGTATTAACCCGGATCAAAAAGAAAAAGGCAGTAAATC 1912781 Query 1699 AATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTG--TGAGAATT 1756 |||||| |||||||||||||| |||| | |||||||| ||||||| ||| | |||||| Sbjct 1912780 AATTGAGCCAACTCCAGTAATGATGATATCTAATGAAGATATAAC--TTGAATAAGAATT 1912723 Query 1757 GGATGT-GAAGAAAGACCTGAACATACACAACCAATAAGAGACAG-AATGTTGAACATTA 1814 || ||| ||| |||||| || |||| ||||||||| | | || ||||| ||||| | Sbjct 1912722 GGCTGTAGAAATAAGACCAGAGCATATTGAACCAATAAAACAAAGCTATGTT-AACATAA 1912664 Query 1815 A 1815 | Sbjct 1912663 A 1912663 >seq15215 Length=4605142 Score = 105 bits (116), Expect = 2e-19 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 1651 TTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAATTGAACCAAC 1710 ||| |||||| || | ||| || |||||||| ||| |||||| | |||||||| Sbjct 4354674 TTCAGGACAAGCAGACAAAATAGACCAAAAAGGAAAAAGAAGTAGAACTACTGAACCAAT 4354733 Query 1711 TCCAGTAATTATGACAACTAATGAAAATAT-AACAATTGTGAGAATTGGATGTGAAGAAA 1769 ||||||||| ||||| |||||||||||||| ||| | || |||||||| |||||| || Sbjct 4354734 TCCAGTAATAATGACCACTAATGAAAATATCAACGA-GGTCAGAATTGGCTGTGAACTAA 4354792 Query 1770 G--ACCTGAACATACACAACCAATAAGAGACAGA 1801 | |||||| |||| ||||||| | | ||||| Sbjct 4354793 GGTTCCTGAATATACTGAACCAATTAAACACAGA 4354826 >seq6912 Length=926260 Score = 100 bits (110), Expect = 1e-17 Identities = 146/206 (71%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 1525 TAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACCAATAA 1584 ||||||||| | || ||| || |||||||||| ||||| || ||||| | | ||| | Sbjct 471632 TAATGTTGGGTTGTACAATCCATCAAATGTAAACTTTCCTTTCAATGATTATTGCAACAG 471573 Query 1585 AAATTTAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAAT----CAATTTA 1640 ||| || | ||||| ||||| | | ||||| || || |||||| ||||||| Sbjct 471572 AAACATATTGTGGATAGAAGAGGTAAGAAACTTAGGCCA----GTTAATGTACCAATTTA 471517 Query 1641 AAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCAAA 1700 ||||||| || |||||| ||||| | ||| |||| | ||||| || || | Sbjct 471516 AAGCAATAATGTCAGGACAATGTATTAGGCTAGATTCAAAAAGAAAAGGCAGCAAATCCA 471457 Query 1701 TTGAACCAACTCCAGTAATTATGACA 1726 ||||||||| |||| || ||||||| Sbjct 471456 TTGAACCAAAACCAGGAAATATGACA 471431 >seq7943 Length=141820 Score = 95.1 bits (104), Expect = 4e-16 Identities = 179/264 (68%), Gaps = 21/264 (8%) Strand=Plus/Plus Query 1520 GTGGGTAATGTTGGTTGTTATAATGCAGCAAATGTAAATTTTCCATTTAATGACTGTACC 1579 || |||||||| | | |||| | || | |||| || |||| ||| | || | Sbjct 121660 GTTGGTAATGTAAGATACTATAGTACATCTTATGTTAACTTTC-----AATCATTGCTAC 121714 Query 1580 AATAAAAATT-TAATTTGGATTGAAGAAGCTGGTAACTTTGGTCAACAAGTTAATCAATT 1638 |||||||| |||| | ||| |||||||| | ||||| || ||| | Sbjct 121715 AATAAAAAACATAATATAGATAGAAGAAGCAGAAAACTTAGGACAAA------------T 121762 Query 1639 TAAAGCAATTTGTTCTGGACAAACAATTAGAATTGATCAAAAAGGTAAAGGAAGTAAGCA 1698 ||||| ||| || ||||||| |||||| | || ||||| ||||| || || Sbjct 121763 TAAAGTAATAATGTCAGGACAAAGTATTAGACTAAATAAAAAA---AAAGGCAGCAAATT 121819 Query 1699 AATTGAACCAACTCCAGTAATTATGACAACTAATGAAAATATAACAATTGTGAGAATTGG 1758 ||||||||||||||||||| ||||||| |||||| | || || ||| ||||||| Sbjct 121820 AATTGAACCAACTCCAGTAGTTATGACTTTCAATGAATACATTACTTGTGTCAGAATTGA 121879 Query 1759 ATGTGAAGAAAGACCTGAACATAC 1782 ||||||| ||| | |||||||| Sbjct 121880 ATGTGAAATTAGAGCAGAACATAC 121903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16914941932080