Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq27289 145 2e-31 >seq27289 Length=1369269 Score = 145 bits (160), Expect = 2e-31 Identities = 220/309 (71%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 1510 AGTTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACA 1569 ||||||||||| ||| | | ||||| | || || | ||| ||||||| || Sbjct 1042627 AGTTCAACAAACAGAACACAGTTTGGCTTTTTGGCCCAGTCACTGTGGGGAAGAAAAATC 1042686 Query 1570 TTGCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGA 1629 |||||||| ||||||| ||| | || || || ||||| | || ||||||||||| Sbjct 1042687 TTGCAGAATCTATTGCACATACAGTTCCATTTTATGGAAAC-TAAAATGGACTAATGAAT 1042745 Query 1630 ACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGA 1689 ||||||||| | ||||||||| || |||||| | |||| | |||||||| ||||||| Sbjct 1042746 CCTTTCCTTTCAGTGATTGTGTGGACAAAATGATTGTTTGATAAGAGGAGGGTAAAATGA 1042805 Query 1690 CTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACC 1749 | ||||| ||||| || | || |||| ||||||| | || | |||| ||| | | Sbjct 1042806 CCAATAAAGTTGTGGAGTTGGCTAAAGTTATTTTGGAGGAATCAGAAGTCCAGGTGAAAC 1042865 Query 1750 AGAAATGTAAAGGATCTGTT-TGTATTGAACCTACTCCTGTAATTATTACTAGTAATACT 1808 | |||||| ||||| ||| | ||| | || || ||||| ||||||||| || | Sbjct 1042866 AAAAATGT-AAGGAAAGGTTACAAAAAGAATCGACACCAGTAATCATTACTAGTGATGCG 1042924 Query 1809 GATATGTGT 1817 || |||||| Sbjct 1042925 GACATGTGT 1042933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16220815154610