Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_001718.1 Length=5075 Score E Sequences producing significant alignments: (Bits) Value seq197 327 4e-86 seq30416 210 7e-51 seq7943 141 3e-30 seq55 136 1e-28 seq15215 82.4 2e-12 >seq197 Length=2052443 Score = 327 bits (362), Expect = 4e-86 Identities = 489/679 (72%), Gaps = 25/679 (4%) Strand=Plus/Minus Query 1165 AATAAAAGATGTACTAGCA-TAGAAGACTGGATGATGACAGATCCAGACAGTTATATAGA 1223 ||||||||| || || || ||||| |||||||| | ||| ||||| || || ||| | Sbjct 1661651 AATAAAAGAA-TAGTATCAATAGAAAACTGGATGGTTGAAGAGCCAGAGAGCTACATACA 1661593 Query 1224 AATGATGGCTCAAACC--GGAGGAGAAAATTTAATCAAAAATACACTAGAAATAACAACT 1281 | || || ||||| |||||||||| |||| |||| | | | ||||| | Sbjct 1661592 ACACATTGC--AAACCCAGGAGGAGAAATAATAATAAAAACCATAATGGAAATGGTACTA 1661535 Query 1282 CTTACTCTAGCAAGAACAAAAACAGCATATGACTTAATACTTGAAAAGGCA--AAACCAA 1339 |||| | |||| | | ||||| ||||| |||| ||||| | | | || || Sbjct 1661534 CTTAGAATGGCAAAATTTATGACAGCCTATGAACTAATTGCAGAAAAAGGATCAGACAAA 1661475 Query 1340 GCATGCTACCAACATTTAATATTAGCAATACAAGAACATGTAAAATATTCAGCATGCACA 1399 || |||||| || | ||||| | | || |||||| | || | ||| Sbjct 1661474 CCAA---ACCAAC------TAGAA--AATACTAAAGTATTCAAAATACTAAGACTAAACA 1661426 Query 1400 ATTGGAACTACATT-AAAGTCTGCCATGCTATAACTTGTGTACTAAACAGACAAGGAGGA 1458 | | || | |||| ||||| |||||||||| ||||| ||||| | |||| |||| Sbjct 1661425 ACTACAA-TCCATTTAAAGTAATGCATGCTATAATGTGTGTGCTAAATAAACAATTAGGA 1661367 Query 1459 AAAAGAAATACAATTCTATT-TCATGGGCCAGCATCAACAGGAAAAAGTATAATTGCTCA 1517 ||||| || || || || | ||| || |||||| |||||||||||| | ||||| || Sbjct 1661366 AAAAGGAACACCATCTTACTATCA-GGACCAGCAAGCACAGGAAAAAGTCTGATTGCACA 1661308 Query 1518 ACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCC 1577 | | ||| | |||||||||||||| || |||||||| || |||||| |||||||| Sbjct 1661307 AAAAATTTGTGAATTAGTTGGTAATGTAGGATGCTACAACCCAAGCAATGTAAACTTTCC 1661248 Query 1578 ATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTCTAA 1637 ||| | |||||| | |||||| |||||||||||||||||||| ||||||| | Sbjct 1661247 ATTCAGTGACTGCTGCAGCAAAAACATAATATGGATTGAAGAAGCAAGAAACTTAGGACA 1661188 Query 1638 CCAAGTAAACCAATTCAAAGCCATATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGG 1697 ||||||||||||||| ||||||||| ||||| ||| |||| ||| | || |||||||| Sbjct 1661187 CCAAGTAAACCAATTTAAAGCCATAATGTCAGGACAATCAATCAGACTAGATCAAAAAGG 1661128 Query 1698 TAAAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAAC 1757 |||||||||||| ||| |||||||| || || |||||||| |||||||||| ||||| Sbjct 1661127 AAAAGGAAGCAAATCAATGGAACCAACACCAGTCATAATGACATCAAATGAAGATATAAC 1661068 Query 1758 TAAAGTTAGAATAGGATGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACAGAAT 1817 ||| ||||||||||| || |||||||||||| | |||||||| | || | || Sbjct 1661067 AGTAGTAAGAATAGGATGTGAAACAAGACCAGAACACAGCGAACCAATATAACACCG-AT 1661009 Query 1818 GT-TAAACATAAACCTAAC 1835 || ||||||| || |||| Sbjct 1661008 GTGTAAACATCAAATTAAC 1660990 Score = 123 bits (136), Expect = 8e-25 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 2382 TTACAGGACTAACTCTACCAGGATACAAATACCTTGGTCCAGGAAACTCACTAGACCAAG 2441 |||||||| || ||||| |||||||||||||| || ||||||||| || | ||||||| Sbjct 1660453 TTACAGGATACACACTACCCGGATACAAATACCTCGGACCAGGAAACACATTCGACCAAG 1660394 Query 2442 GAGAACCAACTAATCCATCAGACGCCGCAGCAAAAGAACACGACGAAGCCTACGACA-AA 2500 ||||||||||||| | || || || ||| ||||| ||||| ||| | | | Sbjct 1660393 GAGAACCAACTAACGAAAGCGATAAAGCTGCCAAAAAACACAACGAACATTACCATATTA 1660334 Query 2501 TACATAAAATCTGGAAAAAATCCATACTTCTACTTCTCAGCAGCTGATGAAAAATTCATA 2560 |||| | || | | ||| ||||| ||| | |||| | ||| || |||| ||||| Sbjct 1660333 TACA-AGAAGCAGAAAACAATCCTTACATAAACTTTAACGAAGCAGACAAAAACTTCATC 1660275 Query 2561 AAAGAAACTGAACACGCAAAAGACTACGGAGGTAAAATTGGACAT 2605 ||||| || ||||| || ||||||| |||||| |||||| || Sbjct 1660274 AAAGACACAGAACAAGCTAAAGACTGAGGAGGTTGGATTGGAAAT 1660230 Score = 86.0 bits (94), Expect = 2e-13 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 3233 GAACAAGAAATATTCAATGTAGTACTTAAAACAATTACAGAATCAGCAACCTCACCACCA 3292 ||||||||||||||||| ||| | | |||||| | |||||| ||||||| ||||||| Sbjct 1659657 GAACAAGAAATATTCAACATAGCAATAAAAACAGTCACAGAAACAGCAACAATACCACCA 1659598 Query 3293 ACCAAAATATATAATAATGATCTAACTGCAAGCTTAATGGTCGCACTAGACACCAATAAC 3352 |||| | ||| | ||||| ||||| |||| | | | ||| ||| || |||||| Sbjct 1659597 ACCACACAATACACAAATGACCTAACAGCAACAATGCTAATAGCAGAAGATACTAATAAC 1659538 Query 3353 ACACTTCCAT 3362 | | |||||| Sbjct 1659537 ATATTTCCAT 1659528 >seq30416 Length=3671673 Score = 210 bits (232), Expect = 7e-51 Identities = 334/468 (71%), Gaps = 11/468 (2%) Strand=Plus/Minus Query 1367 ATACAAGAACATGTAAAATATTCAGCATGCACAATTGGAACTACATTAAAGTCTGCCATG 1426 |||||||| || ||||| || ||| | | |||| || | ||| || |||| Sbjct 1913124 ATACAAGACTATTTAAAACATGCAGATTAAATAATTATAATCCAAATAAGGTTATACATG 1913065 Query 1427 CTATAACTTGTGTACTAAACAGACAAGGAGGAAAAAGAAATACAATTCTATTTCATGGGC 1486 |||||| ||||| |||||| |||| || |||||| | | ||| || | || | | Sbjct 1913064 CTATAATGTGTGTGATAAACAAACAACTGGGGAAAAGACACAAAATACTCCTACAATGAC 1913005 Query 1487 CAGCATCAACAGGAAAAAGTAT-AATTGCTCAACACATTGCAAACTTAGTTGGTAATGTT 1545 ||| | |||||||| | |||||| ||| | ||| | |||||||||||||| Sbjct 1913004 TAGCTAGTATAGGAAAAAAACTTAATTGCACAAAAATTTGTGAT-TTAGTTGGTAATGTA 1912946 Query 1546 GGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTG-TACAAATAAAAACTT 1604 || ||||| || || | ||||| |||||||| || ||||| || | ||| |||||| | Sbjct 1912945 GGATGCTATAACCCATCTAATGTAAACTTTCCTTTCAATGATTGATGCAATAAAAAACAT 1912886 Query 1605 AATATGGATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAGCCA-TAT 1663 ||| | ||| ||||||||||| ||||| |||||||||||||| ||||| | ||| Sbjct 1912885 AATTTAGATGGAAGAAGCAGGGAACTTAGGA---CAAGTAAACCAATTTAAAGCAATTAT 1912829 Query 1664 GTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAA 1723 | ||||| |||| |||| || ||||||| ||||| || ||| |||||| |||| Sbjct 1912828 G-TCAGGACAAAGTATTAACCCGGATCAAAAAGAAAAAGGCAGTAAATCAATTGAGCCAA 1912770 Query 1724 CTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATAGGATG-CGAGGAA 1782 |||| ||||| |||| | |||||||| |||||| | | ||||| || || || | Sbjct 1912769 CTCCAGTAATGATGATATCTAATGAAGATATAACTTGAATAAGAATTGGCTGTAGAAATA 1912710 Query 1783 AGACCAGAACATACACAACCAATAAGAGACAG-AATGTTAAACATAAA 1829 |||||||| |||| ||||||||| | | || ||||| |||||||| Sbjct 1912709 AGACCAGAGCATATTGAACCAATAAAACAAAGCTATGTT-AACATAAA 1912663 >seq7943 Length=141820 Score = 141 bits (156), Expect = 3e-30 Identities = 255/366 (70%), Gaps = 30/366 (8%) Strand=Plus/Plus Query 1440 ACTAAACAGACAAGGAGGAAAAAGAAATA------CAATTCTATTTCATGGGCCAG-CAT 1492 |||||||||| || ||||||| ||||| |||| || | || || ||| || Sbjct 121559 ACTAAACAGATAACTAGGAAAAGAAAATATTACTACAATATTACTACAAGGACCACTCAG 121618 Query 1493 CAACAGGAAAAA-GTATAATTGCTCAACACATTGCAAACTTAGTTGGTAATGTTGGTTGC 1551 || ||||||||| || |||| || ||| | || | |||||||||||||| | | | Sbjct 121619 CA-CAGGAAAAAAGTTTAATAGCACAATAAATATGTGAGTTAGTTGGTAATGTAAGATAC 121677 Query 1552 TACAATGCAGCCAATGTGAACTTTCCATTTAATGACTG-TACAAATAAAAACTTAATATG 1610 || | | || | |||| ||||||| ||| | || ||||| |||||| |||||| Sbjct 121678 TATAGTACATCTTATGTTAACTTTC-----AATCATTGCTACAATAAAAAACATAATATA 121732 Query 1611 GATTGAAGAAGCAGGAAACTTCTCTAACCAAGTAAACCAATTCAAAGCCATATGTTCAGG 1670 ||| |||||||||| |||||| || | | |||| |||| ||| ||||| Sbjct 121733 GATAGAAGAAGCAGAAAACTT---------AGGACA--AATT-AAAGTAATAATGTCAGG 121780 Query 1671 TCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGT 1730 |||| |||||| | | ||||| ||||| |||||| ||||||||||||||| || Sbjct 121781 ACAAAGTATTAGACTAAATAAAAAA---AAAGGCAGCAAATTAATTGAACCAACTCCAGT 121837 Query 1731 AATAATGACTACAAATGAAGACATAACTAAAGTTAGAATAGGATGCGAGGAAAGACCAGA 1790 | | |||||| |||||| |||| ||| || ||||| | ||| || ||| |||| Sbjct 121838 AGTTATGACTTTCAATGAATACATTACTTGTGTCAGAATTGAATGTGAAATTAGAGCAGA 121897 Query 1791 ACATAC 1796 |||||| Sbjct 121898 ACATAC 121903 >seq55 Length=4765182 Score = 136 bits (150), Expect = 1e-28 Identities = 211/295 (72%), Gaps = 20/295 (7%) Strand=Plus/Plus Query 1540 AATGTTGGTTGCTACAATGCAGCCAATGTGAACTTTCCATTTAATGACTGTACAAATAAA 1599 ||| || ||||||||||| || | ||| ||| |||||||| | |||||| || | ||| Sbjct 3164080 AATATTAGTTGCTACAATCCAACAAATATGAGTTTTCCATTCATTGACTGCACTGACAAA 3164139 Query 1600 AACTTAATATGGATTGAAGAAGCAGGA-AACTTCTCTAACCAA---GTAAACCAATTCAA 1655 ||| |||||||| |||||||| ||| |||| || ||| || || | |||||| Sbjct 3164140 AACATAATATGG-TTGAAGAATATGGACAACTA----AATCAATGAGTCAATCGATTCAA 3164194 Query 1656 AGCCAT--ATGTTCAGGTCAAACAATTAGAATTGACCAAAAAGGTAAAGGAAGCAAACAA 1713 | | || |||| ||| || | ||||| || ||||| |||||| | |||| | Sbjct 3164195 A-CAATTGATGTGTAGG-----CAGTAAGAATAGATTAAAAAAGTAAAGTATCAAAACCA 3164248 Query 1714 ATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACATAACTAAAGTTAGAATAGGA 1773 | | |||| ||||| ||| |||| ||||||| |||| || ||||||||||||||| Sbjct 3164249 AATTAACCCACTCCAGTACA---GACTGCAAATGAGAACATTACAAAAGTTAGAATAGGA 3164305 Query 1774 TGCGAGGAAAGACCAGAACATACACAACCAATAAGAGACAGAATGTTAAACATAA 1828 || || || ||| ||| |||| ||| |||| | ||| ||| |||||| ||| Sbjct 3164306 TGTGAATTAAAACCTGAATATACTCAATCAATTAAAGAAAGATGCTTAAACTTAA 3164360 >seq15215 Length=4605142 Score = 82.4 bits (90), Expect = 2e-12 Identities = 238/363 (66%), Gaps = 40/363 (11%) Strand=Plus/Plus Query 1459 AAAAGAAATACAATTCTATTTCATGGGCCAGC-ATCAACAGGAAAAAGTAT-AATTGCTC 1516 ||||| || ||||| ||| | ||| ||||| | ||| ||||||| || |||||| | Sbjct 4354498 AAAAGGAACACAATCCTACTAAATGCACCAGCTAGCAAT-GGAAAAATCATTAATTGCCC 4354556 Query 1517 AACACATTGCAAACTTAGTTGGTAATGTTGGTTGCTACAATGCAGCCAA--TGTGAACTT 1574 | | ||| || |||||| |||||| |||||| ||| |||| || | | || | Sbjct 4354557 AGAAAATTTGTCACCCAGTTGGCAATGTTAGTTGCTGCAACCCAGCAAACATATCAA--T 4354614 Query 1575 TCCATTTAATGACTGTACAAATAAAAACTTAATATGGATTGAAGAAGCAGGAAACTTCTC 1634 |||||||||||||| || | ||| | | |||| ||||| ||| Sbjct 4354615 TCCATTTAATGACTACCCACAAAAATATTAAATA---------------GGAAA--TCTA 4354657 Query 1635 TAACCAAGTAAACCAATTCAAAGCCATATGTTCAGGTCAAACAATTAGAATTGACCAAAA 1694 | || || ||||| | | ||||| ||| || | ||| |||||||| Sbjct 4354658 TTACAAA-TAAACTGACT-------------TCAGGACAAGCAGACAAAATAGACCAAAA 4354703 Query 1695 AGGTAAAGGAAGCAAACAAATTGAACCAACTCCTGTAATAATGACTACAAATGAAGACAT 1754 ||| ||| |||| | | | |||||||| ||| ||||||||||| || |||||| | || Sbjct 4354704 AGGAAAAAGAAGTAGAACTACTGAACCAATTCCAGTAATAATGACCACTAATGAAAATAT 4354763 Query 1755 AACTAAAGTTAGAATAGGATGCGAGGAAAG--ACCAGAACATACACAACCAATAAGAGAC 1812 | | || ||||| || || || ||| || ||| |||| ||||||| | | || Sbjct 4354764 CAACGAGGTCAGAATTGGCTGTGAACTAAGGTTCCTGAATATACTGAACCAATTAAACAC 4354823 Query 1813 AGA 1815 ||| Sbjct 4354824 AGA 4354826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16121654186400