Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq27289 89.7 2e-14 >seq27289 Length=1369269 Score = 89.7 bits (98), Expect = 2e-14 Identities = 166/241 (69%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 1590 CTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTCCCAT 1649 ||||||| ||| | || || || ||||| | || ||||||||||| ||| || | Sbjct 1042696 CTATTGCACATACAGTTCCATTTTATGGAAAC-TAAAATGGACTAATGAATCCTTTCCTT 1042754 Query 1650 TTAATGACTGCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGACCAATAAAG 1709 | | ||| || || || |||||| || | || | |||||||| |||||||||||||||| Sbjct 1042755 TCAGTGATTGTGTGGACAAAATGATTGTTTGATAAGAGGAGGGTAAAATGACCAATAAAG 1042814 Query 1710 TAGTGGAATCCGCAAAAGCGATACTgggggggTCTGCTGTACGAGTTGATCAAAAGTGTA 1769 | ||||| | || |||| || ||| || || | || | || | ||||| |||| Sbjct 1042815 TTGTGGAGTTGGCTAAAGTTATTTTGGAGGAATCAGAAGTCCAGGTGAAACAAAAATGTA 1042874 Query 1770 AGG---GGTCTGTTTGTATTGAACCTACTCCTGTAATAATTACCAGTAATACTGATATGT 1826 ||| ||| | | ||| | || || ||||| ||||| ||| || | || |||| Sbjct 1042875 AGGAAAGGT---TACAAAAAGAATCGACACCAGTAATCATTACTAGTGATGCGGACATGT 1042931 Query 1827 G 1827 | Sbjct 1042932 G 1042932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16303982418270