Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq27289 96.9 1e-16 >seq27289 Length=1369269 Score = 96.9 bits (106), Expect = 1e-16 Identities = 171/248 (69%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 |||||||| |||||| || ||||| | || || | ||| || |||| || | Sbjct 1042629 TTCAACAAACAGAACACAGTTTGGCTTTTTGGCCCAGTCACTGTGGGGAAGAAAAATCTT 1042688 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 || || | || || || || || || ||||| || | | || ||||| |||||| | Sbjct 1042689 GCAGAATCTATTGCACATACAGTTCCATTTTATGGAAAC-TAAAATGGACTAATGAATCC 1042747 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 ||||| || | ||| ||||||||||||||| | |||| | |||||||| || |||||| Sbjct 1042748 TTTCCTTTCAGTGATTGTGTGGACAAAATGATTGTTTGATAAGAGGAGGGTAAAATGACC 1042807 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAG 1555 || || || || || | || || | || ||| || ||| | || | ||| | || Sbjct 1042808 AATAAAGTTGTGGAGTTGGCTAAAGTTATTTTGGAGGAATCAGAAGTCCAGGTGAAACAA 1042867 Query 1556 AAATGTAA 1563 |||||||| Sbjct 1042868 AAATGTAA 1042875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14736599372370