Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq197 318 2e-83 seq30416 170 6e-39 seq6912 140 1e-29 seq7943 102 2e-18 >seq197 Length=2052443 Score = 318 bits (352), Expect = 2e-83 Identities = 533/765 (70%), Gaps = 7/765 (1%) Strand=Plus/Minus Query 901 AAAAGAATCATCACCAGAGAAAAATGGATGCTCCAAGATCCAGACAGCTACATCCAATTC 960 |||||||| | | | |||||| |||||| | |||| ||||| |||||||| ||| | Sbjct 1661648 AAAAGAATAGTATCAATAGAAAACTGGATGGTTGAAGAGCCAGAGAGCTACATACAACAC 1661589 Query 961 ATAGCACAACCTGGTGGTGAACAAACCTGCAGTGCTGTCTTAGACATAGCAACCTTAAGA 1020 || ||| | || || || ||| || | | | | || || | | | ||| Sbjct 1661588 ATTGCAAACCCAGGAGGAGAAATAATAATAAAAACCATAATGGAAATGGTACTACTTAGA 1661529 Query 1021 ATTGCAACAGAAAAAAGTGCCTATGACCTAATCAAAGAACATC---CAGGCAAACTTAAA 1077 || |||| | | | |||||||| ||||| |||| | ||| ||||| || Sbjct 1661528 ATGGCAAAATTTATGACAGCCTATGAACTAATTGCAGAAAAAGGATCAGACAAACCAAAC 1661469 Query 1078 CATATaaaaaaaaCCAAAGCCTGGAAACTAATCAAAAACAACAACATGAATCCACAAAAA 1137 || || |||| || |||| | ||| || | | | |||||| |||||| ||| Sbjct 1661468 CAACTAGAAAATACTAAAGTATTCAAAATACTAAGACTAAACAACTACAATCCATTTAAA 1661409 Query 1138 GTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATCTTA 1197 || ||||| |||||||| || || |||||| | || ||||| || ||||||||| Sbjct 1661408 GTAATGCATGCTATAATGTGTGTGCTAAATAAACAATTAGGAAAAAGGAACACCATCTTA 1661349 Query 1198 CTCTGTGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTT 1257 || | ||||| ||||||||||||||||| || | || |||||||| |||||||| Sbjct 1661348 CTATCAGGACCAGCAAGCACAGGAAAAAGTCTGATTGCACAAAAAATTTGTGAATTAGTT 1661289 Query 1258 GGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAAC 1317 ||||| ||| |||||||| |||||||||| ||||| ||||||| |||||| | | Sbjct 1661288 GGTAATGTAGGATGCTACAACCCAAGCAATGTAAACTTTCCATTCAGTGACTGCTGCAGC 1661229 Query 1318 AAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGG-CACTCAAGTTAACTCTTTCAA 1376 |||||| |||| ||||| ||||||||| | ||| |||| ||| ||||| ||| || || Sbjct 1661228 AAAAACATAATATGGATTGAAGAAGCAAGAAACTTAGGACAC-CAAGTAAACCAATTTAA 1661170 Query 1377 AGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAAT 1436 |||||| ||| || ||| |||||||||| || |||||||| ||||| ||||||||||| Sbjct 1661169 AGCCATAATGTCAGGACAATCAATCAGACTAGATCAAAAAGGAAAAGGAAGCAAATCAAT 1661110 Query 1437 TGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTGGCAC 1496 |||||||| ||||| || |||||| | |||||||| || || ||||| | | || Sbjct 1661109 GGAACCAACACCAGTCATAATGACATCAAATGAAGATATAACAGTAGTAAGAATAGGATG 1661050 Query 1497 AGAACTCAAAACAGAACACAGACAACCAATAATGGATAGATGCTTAAGAATTGAACTCAA 1556 ||| | | |||||||||| |||||||| | |||| ||| || || | | Sbjct 1661049 TGAAACAAGACCAGAACACAGCGAACCAATATAACACCGATGTGTAAACATCAAATTAAC 1660990 Query 1557 AAACAAACTAAGTGGT-GATCATGGCTTGTTAGAAGATACTGAACTACCAGCTATCTTCA 1615 ||| | || || | ||| ||| | || | || ||| ||||| ||| |||| Sbjct 1660989 AAAAAGTTTAGATGATAGAT-TTGGACTAATACACAATGAAGAAATACCAAATATTTTCA 1660931 Query 1616 AATACCTAGAAGGACATGGATTTTATCCAACCATGTGGTCATACA 1660 || |||||| || ||||| | ||||||| ||| ||||||| Sbjct 1660930 AAACTCTAGAAAAACTTGGATATCATCCAACAATGGCATCATACA 1660886 >seq30416 Length=3671673 Score = 170 bits (188), Expect = 6e-39 Identities = 285/406 (70%), Gaps = 7/406 (2%) Strand=Plus/Minus Query 1126 AATCCACAAAAAGTCTACCATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGA 1185 |||||| | || || ||||| |||||||| | ||||||||| |||| |||||| Sbjct 1913086 AATCCAAATAAGGTTATACATGCTATAATGTGTGTGATAAACAAACAACTGGGGAAAAGA 1913027 Query 1186 AATACCATCTTACTCTGTGGACCTGCAAGCACAGGAAAAAGCCT-ACTAGCTCAAAAAAT 1244 | | || | || ||| || || | |||||||| || | | || |||||| | Sbjct 1913026 CACAAAATACTCCTACAATGACTAGCTAGTATAGGAAAAAAACTTAATTGCACAAAAATT 1912967 Query 1245 AGCAAAATTAGTTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAA 1304 | | ||||||||||| ||| ||||| || ||| |||| ||||| || ||||| Sbjct 1912966 TGTGAT-TTAGTTGGTAATGTAGGATGCTATAACCCATCTAATGTAAACTTTCCTTTCAA 1912908 Query 1305 TGACTG-TGTAAACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAG 1363 ||| || || || |||||| |||| | ||| ||||||||||| ||| |||| |||| Sbjct 1912907 TGATTGATGCAATAAAAAACATAATTTAGATGGAAGAAGCAGGGAACTTAGGA---CAAG 1912851 Query 1364 TTAACTCTTTCAAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAG 1423 | ||| || ||||| || ||| || ||| || | | || ||||||| |||| Sbjct 1912850 TAAACCAATTTAAAGCAATTATGTCAGGACAAAGTATTAACCCGGATCAAAAAGAAAAAG 1912791 Query 1424 GCAGCAAATCAATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCACCAAAG 1483 |||| ||||||||||| |||||||||||||| |||| | | |||||||| || || | Sbjct 1912790 GCAGTAAATCAATTGAGCCAACTCCAGTAATGATGATATCTAATGAAGATATAACTTGAA 1912731 Query 1484 TAATAGTTGGC-ACAGAACTCAAAACAGAACACAGACAACCAATAA 1528 ||| | ||||| |||| | | | |||| || | ||||||||| Sbjct 1912730 TAAGAATTGGCTGTAGAAATAAGACCAGAGCATATTGAACCAATAA 1912685 >seq6912 Length=926260 Score = 140 bits (154), Expect = 1e-29 Identities = 229/323 (71%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 1144 CATGCAATA-ATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAATACCATCTTACTCTG 1202 || |||||| ||||| ||| | || ||| | | || |||||||| || || |||| | Sbjct 471750 CAAGCAATATATGTG-TGC-TAAATAAATAGCTTGGTAAAAGAAACACGATAGTACTATA 471693 Query 1203 TGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATA---GCAAAATTAGTTGG 1259 |||| || | || ||||||||| ||| |||||| ||||| | | || |||| ||| Sbjct 471692 GGGACTAGCTACCATAGGAAAAAGTCTAATAGCTCCAAAAAAATGTGAAATATTACTTGC 471633 Query 1260 TAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAACAA 1319 ||| || | ||||||||| |||| ||||| || |||||||| | | |||| Sbjct 471632 TAATGTTGGGTTGTACAATCCATCAAATGTAAACTTTCCTTTCAATGATTATTGCAACAG 471573 Query 1320 AAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGG-CACTCAAGTTAACTCTTTCAAAG 1378 |||| || | ||||||||||| | | | ||| |||| || | || || | ||| |||| Sbjct 471572 AAACATATTGTGGATAGAAGAGGTAAGAAACTTAGGCCAGTTAATGTACCAATTT-AAAG 471514 Query 1379 CCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTG 1438 | || ||| || ||| || || || || |||| | |||||||||||||| |||| Sbjct 471513 CAATAATGTCAGGACAATGTATTAGGCTAGATTCAAAAAGAAAAGGCAGCAAATCCATTG 471454 Query 1439 AACCAACTCCAGTAATCATGACA 1461 |||||| |||| || |||||| Sbjct 471453 AACCAAAACCAGGAAATATGACA 471431 >seq7943 Length=141820 Score = 102 bits (112), Expect = 2e-18 Identities = 231/344 (67%), Gaps = 30/344 (9%) Strand=Plus/Plus Query 1144 CATGCAATAATGTGCTGCCTTAACAAACAAATGGGCAAAAGAAA-------TACCATCTT 1196 |||| || |||||| || |||| | || | || |||||||| ||| || || Sbjct 121542 CATGATATGATGTGCACACTAAACAGATAACTAGG-AAAAGAAAATATTACTACAATATT 121600 Query 1197 ACTCTGTGGACCTGCAAGCACAGGAAAAA-GCCTACTAGCTCAAAAAATAGCAAAATTAG 1255 ||| ||||| ||||||||||||| | || |||| ||| ||||| | |||| Sbjct 121601 ACTACAAGGACCACTCAGCACAGGAAAAAAGTTTAATAGCACAATAAATATGTGAGTTAG 121660 Query 1256 TTGGTAACACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTG-TGTA 1314 ||||||| | | | ||| | | || ||| ||||| ||||| | || | | Sbjct 121661 TTGGTAATGTAAGATACTATAGTACATCTTATGTTAACTT-----TCAATCATTGCTACA 121715 Query 1315 AACAAAAACCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTC 1374 | |||||| |||| | |||||||||||||| ||| |||| ||| |||| Sbjct 121716 ATAAAAAACATAATATAGATAGAAGAAGCAGAAAACTTAGGA---CAAATTAA------- 121765 Query 1375 AAAGCCATCATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCA 1434 || || ||| || ||| || ||||| | ||||| ||||||||||||| | Sbjct 121766 --AGTAATAATGTCAGGACAAAGTATTAGACTAAATAAAAAA---AAAGGCAGCAAATTA 121820 Query 1435 ATTGAACCAACTCCAGTAATCATGACAACCAATGAAGACATCAC 1478 |||||||||||||||||| | ||||| ||||||| |||| || Sbjct 121821 ATTGAACCAACTCCAGTAGTTATGACTTTCAATGAATACATTAC 121864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15027684795180