Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq197 378 2e-101 seq30416 242 1e-60 seq6912 183 9e-43 seq7943 149 2e-32 seq55 91.5 4e-15 >seq197 Length=2052443 Score = 378 bits (418), Expect = 2e-101 Identities = 453/618 (73%), Gaps = 12/618 (2%) Strand=Plus/Minus Query 980 AGAAAAATGGATGCTTGGTGAACCTGATAGCTATATACAACAAATTGCAAATCCAGGAGG 1039 |||||| |||||| ||| || || || ||||| |||||||| |||||||| |||||||| Sbjct 1661631 AGAAAACTGGATGGTTGAAGAGCCAGAGAGCTACATACAACACATTGCAAACCCAGGAGG 1661572 Query 1040 AGAAGCTATTATAAAAGCTACATTAGATATAGT--TACTTTAAAAATGGCAGTAGAACAC 1097 |||| || |||||| | | | | || || || ||||| | ||||||| | Sbjct 1661571 AGAAATAATAATAAAAACCATAATGGAAATGGTACTACTT--AGAATGGCAAAATTTATG 1661514 Query 1098 ACTGCCTTAACACTGATTATACAACATGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNCT 1157 || |||| ||| ||| | || | | || || Sbjct 1661513 ACAGCCTATGAACTAATTGCAGAAAAAGGATCAGACAAACCAAACCAACTAGAAAATACT 1661454 Query 1158 AAAGTATGGAACCTACTTAAA---AATAATTCCATGAACCCATACAAAGTATTTCATGCA 1214 ||||||| || |||| | | || || | || | |||| |||||| | ||||| Sbjct 1661453 AAAGTATTCAAAATACTAAGACTAAACAACTACA---ATCCATTTAAAGTAATGCATGCT 1661397 Query 1215 ATGATGTGCTGT-CTAAACAAACAAATGGGCAAAAGAAACACAATCTTACTTTGTGGTCC 1273 || ||||| ||| ||||| |||||| | || ||||| ||||| |||||||| | || || Sbjct 1661396 ATAATGTG-TGTGCTAAATAAACAATTAGGAAAAAGGAACACCATCTTACTATCAGGACC 1661338 Query 1274 AGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATTGCTCAATTGGTTGGTAATGTAGG 1333 |||||| || |||||||| || || |||||||||||| | |||| |||||||||||||| Sbjct 1661337 AGCAAGCACAGGAAAAAGTCTGATTGCACAAAAAATTTGTGAATTAGTTGGTAATGTAGG 1661278 Query 1334 ATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGCAACAAAAACCTAAT 1393 ||||||||| ||||||||||| ||||||||||||| || || ||| ||||||| |||| Sbjct 1661277 ATGCTACAACCCAAGCAATGTAAACTTTCCATTCAGTGACTGCTGCAGCAAAAACATAAT 1661218 Query 1394 ATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTTAAAGCAATCATGAG 1453 |||||| ||||||||| ||||||| ||| |||||||||||||||||||| || ||| Sbjct 1661217 ATGGATTGAAGAAGCAAGAAACTTAGGACACCAAGTAAACCAATTTAAAGCCATAATGTC 1661158 Query 1454 TGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACCATCGAACCAACTCC 1513 || ||| |||| |||||||| |||||||| ||||| |||||| | || |||||||| || Sbjct 1661157 AGGACAATCAATCAGACTAGATCAAAAAGGAAAAGGAAGCAAATCAATGGAACCAACACC 1661098 Query 1514 AGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGGTCTGAACTTAGACC 1573 ||| ||||||||| |||||||||| |||||| ||| |||| | |||| ||||| Sbjct 1661097 AGTCATAATGACATCAAATGAAGATATAACAGTAGTAAGAATAGGATGTGAAACAAGACC 1661038 Query 1574 AGAACATAAACAACCAAT 1591 |||||| | ||||||| Sbjct 1661037 AGAACACAGCGAACCAAT 1661020 >seq30416 Length=3671673 Score = 242 bits (268), Expect = 1e-60 Identities = 311/418 (74%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 1178 AAATAATTCCATGAACCCATACAAAGTATTTCATGCAATGATGTGCTGTC-TAAACAAAC 1236 |||||||| || || ||| | || || | ||||| || ||||| ||| ||||||||| Sbjct 1913096 AAATAATT--AT-AATCCAAATAAGGTTATACATGCTATAATGTG-TGTGATAAACAAAC 1913041 Query 1237 AAATGGGCAAAAGAAACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCT-A 1295 || |||| |||||| ||| ||| | || | | ||| |||| ||||||| || | Sbjct 1913040 AACTGGGGAAAAGACACAAAATACTCCTACAATGACTAGCTAGTATAGGAAAAAAACTTA 1912981 Query 1296 ATAGCACAAAAAATTGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTT 1355 || ||||||||| ||| | | || |||||||||||||||||||| || ||| ||||| Sbjct 1912980 ATTGCACAAAAATTTG-TGATTTAGTTGGTAATGTAGGATGCTATAACCCATCTAATGTA 1912922 Query 1356 AACTTTCCATTCAACGATTGTAGCAACAAAAACC-TAATATGGATAGAAGAAGCAGGAAA 1414 |||||||| ||||| ||||| |||| ||||| | |||| | ||| ||||||||||| || Sbjct 1912921 AACTTTCCTTTCAATGATTGATGCAATAAAAAACATAATTTAGATGGAAGAAGCAGGGAA 1912862 Query 1415 CTTTGGAACTCAAGTAAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGA 1474 ||| ||| ||||||||||||||||||||||| ||| || ||| |||| | || Sbjct 1912861 CTTAGGA---CAAGTAAACCAATTTAAAGCAATTATGTCAGGACAAAGTATTAACCCGGA 1912805 Query 1475 CCAAAAAGGCAAAGGTAGCAAAACCATCGAACCAACTCCAGTTATAATGACAACAAATGA 1534 ||||||| ||||| || ||| | || || ||||||||||| || |||| | | ||||| Sbjct 1912804 TCAAAAAGAAAAAGGCAGTAAATCAATTGAGCCAACTCCAGTAATGATGATATCTAATGA 1912745 Query 1535 AGACATAACAAGAGTTGTGGTAGGGTCT-GAACTTAGACCAGAACATAAACAACCAAT 1591 ||| ||||| || | | || | | ||| | |||||||| |||| ||||||| Sbjct 1912744 AGATATAACTTGAATAAGAATTGGCTGTAGAAATAAGACCAGAGCATATTGAACCAAT 1912687 >seq6912 Length=926260 Score = 183 bits (202), Expect = 9e-43 Identities = 259/353 (73%), Gaps = 11/353 (3%) Strand=Plus/Minus Query 1179 AATAATTCCATGAACCCATACAAAGTATTTCATGCAATG-ATGTGCTGTCTAAACAAACA 1237 ||||||| || |||||| ||| || |||| ||||| ||||| || ||||| ||| | Sbjct 471777 AATAATT--AT-AACCCAATTAAATTAATTCAAGCAATATATGTG-TG-CTAAATAAATA 471723 Query 1238 AATGGGCAAAAGAAACACAATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAAT 1297 | || ||||||||||| || |||| | || | ||| | | |||||||| ||||| Sbjct 471722 GCTTGGTAAAAGAAACACGATAGTACTATAGGGACTAGCTACCATAGGAAAAAGTCTAAT 471663 Query 1298 AGCAC--AAAAAAT-TGCTCAATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGT 1354 ||| | ||||||| || ||| ||| |||||| || | ||||||||| ||||| Sbjct 471662 AGCTCCAAAAAAATGTGAAATATTACTTGCTAATGTTGGGTTGTACAATCCATCAAATGT 471603 Query 1355 TAACTTTCCATTCAACGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAA 1414 |||||||| ||||| |||| | |||||| |||| || | ||||||||||| | | |||| Sbjct 471602 AAACTTTCCTTTCAATGATTATTGCAACAGAAACATATTGTGGATAGAAGAGGTAAGAAA 471543 Query 1415 CTTTGG-AACTCAAGTAAACCAATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAG 1473 ||| || | | || | |||||||||||||||| ||| || ||| ||||| |||| Sbjct 471542 CTTAGGCCAGTTAA-TGTACCAATTTAAAGCAATAATGTCAGGACAATGTATTAGGCTAG 471484 Query 1474 ACCAAAAAGGCAAAGGTAGCAAAACCATCGAACCAACTCCAGTTATAATGACA 1526 | |||| | ||||| |||||| |||| ||||||| |||| | |||||| Sbjct 471483 ATTCAAAAAGAAAAGGCAGCAAATCCATTGAACCAAAACCAGGAAATATGACA 471431 >seq7943 Length=141820 Score = 149 bits (164), Expect = 2e-32 Identities = 266/387 (69%), Gaps = 30/387 (8%) Strand=Plus/Plus Query 1204 TATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAAC-------ACA 1256 || |||||| ||||||||| ||||||| | || | || |||||||| ||| Sbjct 121537 TAATTCATGATATGATGTGCACACTAAACAGATAACTAGG-AAAAGAAAATATTACTACA 121595 Query 1257 ATCTTACTTTGTGGTCCAGCAAGTACTGGAAAAA-GCCTAATAGCACAAAAAATTGCTCA 1315 || ||||| || ||| || || ||||||| | ||||||||||| |||| | | Sbjct 121596 ATATTACTACAAGGACCACTCAGCACAGGAAAAAAGTTTAATAGCACAATAAATATGTGA 121655 Query 1316 ATTGGTTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTG 1375 || |||||||||||| ||| ||| | | || ||||||||| ||||| |||| Sbjct 121656 GTTAGTTGGTAATGTAAGATACTATAGTACATCTTATGTTAACT-----TTCAATCATTG 121710 Query 1376 -TAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACC 1434 || | |||||| |||||| |||||||||||||| |||||| ||| | Sbjct 121711 CTACAATAAAAAACATAATATAGATAGAAGAAGCAGAAAACTTAGGA------------C 121758 Query 1435 AATTTAAAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCA 1494 || |||||| ||| ||| || ||| ||||||||| | ||||| ||||| |||| Sbjct 121759 AAATTAAAGTAATAATGTCAGGACAAAGTATTAGACTAAATAAAAAA---AAAGGCAGCA 121815 Query 1495 AAACCATCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGG 1554 || || |||||||||||||| | ||||| |||||| |||| || | || Sbjct 121816 AATTAATTGAACCAACTCCAGTAGTTATGACTTTCAATGAATACATTACTTGTGTCAGAA 121875 Query 1555 TAGGGTCTGAACTTAGACCAGAACATA 1581 | | | |||| ||||| ||||||||| Sbjct 121876 TTGAATGTGAAATTAGAGCAGAACATA 121902 >seq55 Length=4765182 Score = 91.5 bits (100), Expect = 4e-15 Identities = 191/274 (70%), Gaps = 18/274 (7%) Strand=Plus/Plus Query 1335 TGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGCAACAAAAACCTAATA 1394 ||||||||||||| ||| | | |||||||||| || || | |||||||| ||||| Sbjct 3164089 TGCTACAATCCAACAAATATGAGTTTTCCATTCATTGACTGCACTGACAAAAACATAATA 3164148 Query 1395 TGGATAGAAGAAGCAGGA-AACTTTGGAACTCA---AGTAAACCAATTTAAAGCAATCAT 1450 ||| | |||||| ||| |||| || ||| ||| || | ||| ||| |||| | Sbjct 3164149 TGG-TTGAAGAATATGGACAACT----AAATCAATGAGTCAATCGATTCAAA-CAAT--T 3164200 Query 1451 GAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACC-ATCGAACCAA 1509 || || | ||| | ||| |||| ||||| | ||| ||| ||||||| | |||| | Sbjct 3164201 GA-TGTGTAGGCAGTAAGAATAGATTAAAAAAGTAAA-GTATCAAAACCAAATTAACCCA 3164258 Query 1510 CTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGGTCTGAACTTA 1569 |||||| || ||| ||||||| |||| |||| |||| |||| | |||| | | Sbjct 3164259 CTCCAG---TACAGACTGCAAATGAGAACATTACAAAAGTTAGAATAGGATGTGAATTAA 3164315 Query 1570 GACCAGAACATAAACAACCAATCATGGACAGATG 1603 ||| ||| ||| ||| |||| | || ||||| Sbjct 3164316 AACCTGAATATACTCAATCAATTAAAGAAAGATG 3164349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14643835885980