Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_028650.1 Length=4634 Score E Sequences producing significant alignments: (Bits) Value seq197 336 6e-89 seq30416 241 4e-60 seq6912 187 7e-44 seq7943 150 5e-33 >seq197 Length=2052443 Score = 336 bits (372), Expect = 6e-89 Identities = 380/504 (75%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 1299 AATCCaaaaaaaGTATTTCATGCAATTATGTGCTGT-CTAAACAAACAGATGGGAAAAAG 1357 |||||| |||||| | ||||| || ||||| ||| ||||| ||||| | |||||||| Sbjct 1661420 AATCCATTTAAAGTAATGCATGCTATAATGTG-TGTGCTAAATAAACAATTAGGAAAAAG 1661362 Query 1358 AAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGCACAAAAAAT 1417 ||||| || |||| | || |||||||| ||||||||||| | | ||||||||||| Sbjct 1661361 GAACACCATCTTACTATCAGGACCAGCAAGCACAGGAAAAAGTCTGATTGCACAAAAAAT 1661302 Query 1418 AGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAACTTTCCATTCAA 1477 | | |||||||| |||||||| ||||||||| | |||||||||||||||||||||| Sbjct 1661301 TTGTGAATTAGTTGGTAATGTAGGATGCTACAACCCAAGCAATGTAAACTTTCCATTCAG 1661242 Query 1478 TGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGT 1537 ||| || ||| ||||||| |||||||||| ||||||||| ||||||| ||| ||||| Sbjct 1661241 TGACTGCTGCAGCAAAAACATAATATGGATTGAAGAAGCAAGAAACTTAGGACACCAAGT 1661182 Query 1538 AAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACCAAAAAGGCAAAGG 1597 ||||||||| ||||| || ||| || ||||||||||||||||| |||||||| ||||| Sbjct 1661181 AAACCAATTTAAAGCCATAATGTCAGGACAATCAATCAGACTAGATCAAAAAGGAAAAGG 1661122 Query 1598 CAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGAAGACATTACTAAGGT 1657 |||||| | || |||||||| ||||| || ||||| |||||||||| || || || Sbjct 1661121 AAGCAAATCAATGGAACCAACACCAGTCATAATGACATCAAATGAAGATATAACAGTAGT 1661062 Query 1658 CGTGGTAGGGTCAGAACTTAGACCTGAACACAAACAACCAATCATGGACAGATGTATACA 1717 |||| | ||| ||||| ||||||| ||||||| || ||||| || | Sbjct 1661061 AAGAATAGGATGTGAAACAAGACCAGAACACAGCGAACCAATATAACACCGATGTGTAAA 1661002 Query 1718 AATACGCTTAACCACAAGACTTCCTG-GAGACTTTGGTTTACTTAATAATGGAGAAATTC 1776 || ||||| | ||| | || ||| ||||| || | | |||| |||||| | Sbjct 1661001 CATCAAATTAACAAAAAGTTTAGATGATAGA-TTTGGACTAATACACAATGAAGAAATAC 1660943 Query 1777 CAAGCATCTTCAGAAGACTAGAAA 1800 ||| || |||| || ||||||| Sbjct 1660942 CAAATATTTTCAAAACTCTAGAAA 1660919 >seq30416 Length=3671673 Score = 241 bits (266), Expect = 4e-60 Identities = 280/370 (76%), Gaps = 11/370 (3%) Strand=Plus/Minus Query 1286 AAATAATAATATGAATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTC-TAAACAAAC 1344 ||||||| ||| ||||||| || || | ||||| || ||||| ||| ||||||||| Sbjct 1913096 AAATAATTATA---ATCCAAATAAGGTTATACATGCTATAATGTG-TGTGATAAACAAAC 1913041 Query 1345 AGATGGGAAAAAGAAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAG-CTTA 1403 | |||| |||||| ||| ||| || || | | ||| |||| |||||||| |||| Sbjct 1913040 AACTGGGGAAAAGACACAAAATACTCCTACAATGACTAGCTAGTATAGGAAAAAAACTTA 1912981 Query 1404 CTAGCACAAAAAATAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTA 1463 | ||||||||| | | | | |||||||| |||||||| ||||| ||| | |||||| Sbjct 1912980 ATTGCACAAAAATTTG-TGATTTAGTTGGTAATGTAGGATGCTATAACCCATCTAATGTA 1912922 Query 1464 AACTTTCCATTCAATGATTGTAGCAACAAAAACC-TAATATGGATAGAAGAAGCAGGAAA 1522 |||||||| ||||||||||| |||| ||||| | |||| | ||| ||||||||||| || Sbjct 1912921 AACTTTCCTTTCAATGATTGATGCAATAAAAAACATAATTTAGATGGAAGAAGCAGGGAA 1912862 Query 1523 CTTTGGAACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGA 1582 ||| ||| |||||||||||||| |||||||| ||| || ||| || | | || Sbjct 1912861 CTTAGGA---CAAGTAAACCAATTTAAAGCAATTATGTCAGGACAAAGTATTAACCCGGA 1912805 Query 1583 CCAAAAAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACAAATGA 1642 ||||||| |||||||| ||| | || || |||||||||||||| |||| | ||||| Sbjct 1912804 TCAAAAAGAAAAAGGCAGTAAATCAATTGAGCCAACTCCAGTAATGATGATATCTAATGA 1912745 Query 1643 AGACATTACT 1652 ||| || ||| Sbjct 1912744 AGATATAACT 1912735 >seq6912 Length=926260 Score = 187 bits (206), Expect = 7e-44 Identities = 255/349 (73%), Gaps = 8/349 (2%) Strand=Plus/Minus Query 1290 AATAATATGAATCCaaaaaaaGTATTTCATGCAAT-TATGTGCTGTCTAAACAAACAGAT 1348 |||||| || |||| ||| || |||| ||||| |||||| || ||||| ||| || | Sbjct 471777 AATAATTATAACCCAATTAAATTAATTCAAGCAATATATGTG-TG-CTAAATAAATAGCT 471720 Query 1349 GGGAAAAAGAAACACAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAAGCTTACTAGC 1408 || ||||||||||| || |||| | || | ||| | | ||||||||| || |||| Sbjct 471719 TGGTAAAAGAAACACGATAGTACTATAGGGACTAGCTACCATAGGAAAAAGTCTAATAGC 471660 Query 1409 ACAAAAAATAGCTCAG---TTAGTTGGAAATGTAGGTTGCTACAACGCTAGCAATGTAAA 1465 | ||||| | | | ||| ||| ||||| || | ||||| | |||||||| Sbjct 471659 TCCAAAAAAATGTGAAATATTACTTGCTAATGTTGGGTTGTACAATCCATCAAATGTAAA 471600 Query 1466 CTTTCCATTCAATGATTGTAGCAACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTT 1525 |||||| |||||||||| | |||||| |||| || | ||||||||||| | | ||||||| Sbjct 471599 CTTTCCTTTCAATGATTATTGCAACAGAAACATATTGTGGATAGAAGAGGTAAGAAACTT 471540 Query 1526 TGG-AACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGACTAGACC 1584 || | | || | ||||||| |||||||| ||| || |||| || || ||||| Sbjct 471539 AGGCCAGTTAA-TGTACCAATTTAAAGCAATAATGTCAGGACAATGTATTAGGCTAGATT 471481 Query 1585 AAAAAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGAC 1633 |||| | |||||||||||| |||| ||||||| |||| || |||||| Sbjct 471480 CAAAAAGAAAAGGCAGCAAATCCATTGAACCAAAACCAGGAAATATGAC 471432 >seq7943 Length=141820 Score = 150 bits (166), Expect = 5e-33 Identities = 259/375 (69%), Gaps = 32/375 (9%) Strand=Plus/Plus Query 1286 AAATAATAATATGAATCCaaaaaaaGTATTTCATGCAATTATGTGCTGTCTAAACAAACA 1345 ||||||||||| || ||||| || |||||| || |||||| ||||||| | | Sbjct 121515 AAATAATAATAA----CCTAAAAATATAATTCATGATATGATGTGCACACTAAACAGATA 121570 Query 1346 GATGGGAAAAAGAAACA------CAATTCTACTTTGTGGTCCAGCAAGTACAGGAAAAA- 1398 | |||||| ||| | |||| |||| || ||| || |||||||||| Sbjct 121571 ACTAGGAAAAGAAAATATTACTACAATATTACTACAAGGACCACTCAGCACAGGAAAAAA 121630 Query 1399 GCTTACTAGCACAAAAAATAGCTCAGTTAGTTGGAAATGTAGGTTGCTACAACGCTAGCA 1458 | ||| |||||||| ||||| | |||||||||| |||||| | | ||| | | Sbjct 121631 GTTTAATAGCACAATAAATATGTGAGTTAGTTGGTAATGTAAGATACTATAGTACATCTT 121690 Query 1459 ATGTAAACTTTCCATTCAATGATTGTAGCAACAAAAACC-TAATATGGATAGAAGAAGCA 1517 |||| ||||||| ||| |||| ||| ||||| | |||||| ||||||||||||| Sbjct 121691 ATGTTAACTTTC-----AATCATTGCTACAATAAAAAACATAATATAGATAGAAGAAGCA 121745 Query 1518 GGAAACTTTGGAACTCAAGTAAACCAATTCAAAGCAATCATGAGTGGTCAATCAATCAGA 1577 | |||||| ||| ||| | |||| ||| ||| || ||| || ||| Sbjct 121746 GAAAACTTAGGA------------CAAATTAAAGTAATAATGTCAGGACAAAGTATTAGA 121793 Query 1578 CTAGACCAAAAAGGCAAAGGCAGCAAAACCATAGAACCAACTCCAGTAATTATGACCACA 1637 ||| | ||||| |||||||||||| || ||||||||||||||| ||||||| Sbjct 121794 CTAAATAAAAAA---AAAGGCAGCAAATTAATTGAACCAACTCCAGTAGTTATGACTTTC 121850 Query 1638 AATGAAGACATTACT 1652 |||||| |||||||| Sbjct 121851 AATGAATACATTACT 121865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14711009445090