Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_029797.1 Length=4765 Score E Sequences producing significant alignments: (Bits) Value seq197 345 1e-91 seq30416 217 4e-53 seq6912 147 7e-32 seq7943 100 9e-18 seq55 91.5 4e-15 >seq197 Length=2052443 Score = 345 bits (382), Expect = 1e-91 Identities = 404/542 (75%), Gaps = 4/542 (1%) Strand=Plus/Minus Query 1142 AAGAC--AACAACATGAATCCATACAAAGTATTCCATGCAATCATGTGCTGT-CTCAACA 1198 ||||| |||||| ||||||| |||||| | ||||| || ||||| ||| || || | Sbjct 1661436 AAGACTAAACAACTACAATCCATTTAAAGTAATGCATGCTATAATGTG-TGTGCTAAATA 1661378 Query 1199 AACAAATGGGCAAAAGAAACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCC 1258 ||||| | || ||||| |||||||| |||| | || || |||||||| || ||||| | Sbjct 1661377 AACAATTAGGAAAAAGGAACACCATCTTACTATCAGGACCAGCAAGCACAGGAAAAAGTC 1661318 Query 1259 TAATAGCACAAAAAATATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATG 1318 | || ||||||||||| || || | ||||||||||| || |||||||| | |||| Sbjct 1661317 TGATTGCACAAAAAATTTGTGAATTAGTTGGTAATGTAGGATGCTACAACCCAAGCAATG 1661258 Query 1319 TAAACTTTCCTTTCAATGACTGCAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCA 1378 |||||||||| |||| ||||||| ||| |||||| ||||| ||| | |||||||| | | Sbjct 1661257 TAAACTTTCCATTCAGTGACTGCTGCAGCAAAAACATAATATGGATTGAAGAAGCAAGAA 1661198 Query 1379 ACTTTGGAGGCCAAGTAAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTG 1438 |||| ||| ||||||||||||||| ||| | || ||| || |||||||||||||| | Sbjct 1661197 ACTTAGGACACCAAGTAAACCAATTTAAAGCCATAATGTCAGGACAATCAATCAGACTAG 1661138 Query 1439 ACCAAAAAGGAAAAGGCAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATG 1498 | |||||||||||||| || ||| ||| ||||||| |||||||||||||| |||||| Sbjct 1661137 ATCAAAAAGGAAAAGGAAGCAAATCAATGGAACCAACACCAGTCATAATGACATCAAATG 1661078 Query 1499 AAGACATAACCAAAGTAATGATAGGATGTGAACTCAAACCAGAACACAAACAACCTATAA 1558 |||| ||||| ||||| |||||||||||| | ||||||||||| |||| ||| Sbjct 1661077 AAGATATAACAGTAGTAAGAATAGGATGTGAAACAAGACCAGAACACAGCGAACCAATAT 1661018 Query 1559 TGGACAGATGTGTAAGAATAGAACTCaaaaaaaGACTACAAGGTGACTTTGGTTTGCTTG 1618 || ||||||||| || || | | |||||| || | | | ||||| | | Sbjct 1661017 AACACCGATGTGTAAACATCAAATTAACAAAAAGTTTAGATGATAGATTTGGACTAATAC 1660958 Query 1619 AAGATGGTGAAATCCCAGACATATTCAAATGGTTAATTAAGAAAGGATATGAACCAACAA 1678 | ||| ||||| ||| | || |||||| || || |||||| | ||||||| Sbjct 1660957 ACAATGAAGAAATACCAAATATTTTCAAAACTCTAGAAAAACTTGGATATCATCCAACAA 1660898 Query 1679 TG 1680 || Sbjct 1660897 TG 1660896 >seq30416 Length=3671673 Score = 217 bits (240), Expect = 4e-53 Identities = 351/496 (71%), Gaps = 9/496 (2%) Strand=Plus/Minus Query 1156 AATCCATACAAAGTATTCCATGCAATCATGTGCTGTC-TCAACAAACAAATGGGCAAAAG 1214 |||||| | || || | ||||| || ||||| ||| | ||||||||| |||| ||||| Sbjct 1913086 AATCCAAATAAGGTTATACATGCTATAATGTG-TGTGATAAACAAACAACTGGGGAAAAG 1913028 Query 1215 AAACACCATTCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCT-AATAGCACAAAAAA 1273 | ||| || || || | | || || | || |||| || ||| ||||||||| Sbjct 1913027 ACACAAAATACTCCTACAATGACTAGCTAGTATAGGAAAAAAACTTAATTGCACAAAAAT 1912968 Query 1274 TATGCCAACTGGTTGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCA 1333 | || | | ||||||||||| || ||||| || | || ||||||||||||||||||| Sbjct 1912967 T-TGTGATTTAGTTGGTAATGTAGGATGCTATAACCCATCTAATGTAAACTTTCCTTTCA 1912909 Query 1334 ATGACTGCAGCAACAAAAAT-ATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAA 1392 |||| || |||| ||||| ||||| | | | |||||||| || ||||| ||| ||| Sbjct 1912908 ATGATTGATGCAATAAAAAACATAATTTAGATGGAAGAAGCAGGGAACTTAGGA---CAA 1912852 Query 1393 GTAAACCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAA 1452 ||||||||||| ||| |||| ||| || ||| || | | || ||||||| |||| Sbjct 1912851 GTAAACCAATTTAAAGCAATTATGTCAGGACAAAGTATTAACCCGGATCAAAAAGAAAAA 1912792 Query 1453 GGCAGTAAAGAAATCCAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAA 1512 ||||||||| ||| | ||||||||||| || |||| | |||||||| ||||| | Sbjct 1912791 GGCAGTAAATCAATTGAGCCAACTCCAGTAATGATGATATCTAATGAAGATATAACTTGA 1912732 Query 1513 GTAATGATAGGATGT-GAACTCAAACCAGAACACAAACAACCTATAATGGACAGATGTGT 1571 ||| || || ||| ||| | | |||||| || | |||| |||| | || | ||| Sbjct 1912731 ATAAGAATTGGCTGTAGAAATAAGACCAGAGCATATTGAACCAATAAAACAAAGCTATGT 1912672 Query 1572 AAGAATAGAACTCaaaaaaaGACTACAAGGTGACTTTGGTTTGCTTGAAGATGGTGAAAT 1631 | ||| || ||| ||||| || | |||| | |||| | | | ||| |||||| Sbjct 1912671 TAACATAAAAGTCACAAAAACTTTAAATGGTGGGTGTGGTATTATAGGAGACCATGAAAT 1912612 Query 1632 CCCAGACATATTCAAA 1647 ||| |||| || ||| Sbjct 1912611 ACCAAACATCTTTAAA 1912596 >seq6912 Length=926260 Score = 147 bits (162), Expect = 7e-32 Identities = 230/323 (71%), Gaps = 12/323 (4%) Strand=Plus/Minus Query 1165 AAAGTATTCCATGCAATC-ATGTGCTGTCTCAACAAACAAATGGGCAAAAGAAACACCAT 1223 ||| || | || ||||| ||||| || || || ||| | | || ||||||||||| || Sbjct 471759 AAATTAATTCAAGCAATATATGTG-TG-CTAAATAAATAGCTTGGTAAAAGAAACACGAT 471702 Query 1224 TCTACTGTGTGGGCCTGCAAGCACTGGCAAAAGCCTAATAGCACAAAAAATATGCCAACT 1283 |||| | || | || | || || ||||| |||||||| | ||||| ||| || | Sbjct 471701 AGTACTATAGGGACTAGCTACCATAGGAAAAAGTCTAATAGCTCCAAAAAAATGTGAAAT 471642 Query 1284 GGT---TGGTAATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTG 1340 | || ||||||||| | |||||| | |||||||||||||||||||||||||| | Sbjct 471641 ATTACTTGCTAATGTTGGGTTGTACAATCCATCAAATGTAAACTTTCCTTTCAATGATTA 471582 Query 1341 CAGCAACAAAAATATAATCTGGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAA---A 1397 |||||| ||| ||| | ||| ||||||| | | ||||| |||||| ||| | Sbjct 471581 TTGCAACAGAAACATATTGTGGATAGAAGAGGTAAGAAACTT---AGGCCAGTTAATGTA 471525 Query 1398 CCAATTCAAAACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAG 1457 |||||| ||| |||| ||| || |||| || || || || |||| |||||||||| Sbjct 471524 CCAATTTAAAGCAATAATGTCAGGACAATGTATTAGGCTAGATTCAAAAAGAAAAGGCAG 471465 Query 1458 TAAAGAAATCCAACCAACTCCAG 1480 ||| || |||||| |||| Sbjct 471464 CAAATCCATTGAACCAAAACCAG 471442 >seq7943 Length=141820 Score = 100 bits (110), Expect = 9e-18 Identities = 205/304 (67%), Gaps = 22/304 (7%) Strand=Plus/Plus Query 1243 AGCACTGGCAAAA-GCCTAATAGCACAAAAAATATGCCAACTGGTTGGTAATGTTGGTTG 1301 ||||| || |||| | ||||||||||| ||||||| | | ||||||||||| | | Sbjct 121617 AGCACAGGAAAAAAGTTTAATAGCACAATAAATATGTGAGTTAGTTGGTAATGTAAGATA 121676 Query 1302 CTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGCAACAAAAAT-ATAATCT 1360 ||| | | | || |||| ||||||| ||| | ||| ||| ||||| ||||| | Sbjct 121677 CTATAGTACATCTTATGTTAACTTTC-----AATCATTGCTACAATAAAAAACATAATAT 121731 Query 1361 GGGTAGAAGAAGCTGGCAACTTTGGAGGCCAAGTAAACCAATTCAAAACAATCATGAGTG 1420 | |||||||||| | ||||| ||| ||| | ||| ||| ||| | Sbjct 121732 AGATAGAAGAAGCAGAAAACTTAGGA------------CAAATTAAAGTAATAATGTCAG 121779 Query 1421 GCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAAATCCAACCAACTCCAG 1480 | ||| || ||||| | ||||| |||||||| ||| ||| |||||||||||| Sbjct 121780 GACAAAGTATTAGACTAAATAAAAAA---AAAGGCAGCAAATTAATTGAACCAACTCCAG 121836 Query 1481 TCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGGATGTGAACTCAAACCAG 1540 | | |||||| |||||| |||| || || | || | ||||||| | | | ||| Sbjct 121837 TAGTTATGACTTTCAATGAATACATTACTTGTGTCAGAATTGAATGTGAAATTAGAGCAG 121896 Query 1541 AACA 1544 |||| Sbjct 121897 AACA 121900 >seq55 Length=4765182 Score = 91.5 bits (100), Expect = 4e-15 Identities = 194/281 (69%), Gaps = 14/281 (5%) Strand=Plus/Plus Query 1291 AATGTTGGTTGCTACAATGCCTCAAATGTAAACTTTCCTTTCAATGACTGCAGCAACAAA 1350 ||| || ||||||||||| | ||||| | | ||||| |||| |||||||| ||||| Sbjct 3164080 AATATTAGTTGCTACAATCCAACAAATATGAGTTTTCCATTCATTGACTGCACTGACAAA 3164139 Query 1351 AATATAATCTGGGTAGAAGAAGCTGG-CAACT--TTGGAGGCCAAGTAAACCAATTCAAA 1407 || ||||| | ||| |||||| ||| ||||| | | | ||| || | |||| || Sbjct 3164140 AACATAATAT-GGTTGAAGAATATGGACAACTAAATCAATG---AGTCAATCGATTC-AA 3164194 Query 1408 ACAATCATGAGTGGCCAATCAATCAGACTTGACCAAAAAGGAAAAGGCAGTAAAGAAATC 1467 ||||| ||| || | || | ||| | || ||||| | |||| ||| || Sbjct 3164195 ACAAT--TGA-TGTGTAGGCAGTAAGAATAGATTAAAAAAGTAAAGTATCAAAACCAAAT 3164251 Query 1468 CAACCAACTCCAGTCATAATGACTACAAATGAAGACATAACCAAAGTAATGATAGGATGT 1527 |||| ||||||| || |||| ||||||| |||| || ||||| | ||||||||| Sbjct 3164252 TAACCCACTCCAG---TACAGACTGCAAATGAGAACATTACAAAAGTTAGAATAGGATGT 3164308 Query 1528 GAACTCAAACCAGAACACAAACAACCTATAATGGACAGATG 1568 ||| | ||||| ||| | | ||| | || | || ||||| Sbjct 3164309 GAATTAAAACCTGAATATACTCAATCAATTAAAGAAAGATG 3164349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15130044504300