Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcophilus_20harrisii_20[refseq_20GCF_5F000189315.1_202011-02-17] 35,974 sequences; 3,174,693,010 total letters Query= NC_030837.1 Length=4639 Score E Sequences producing significant alignments: (Bits) Value seq197 342 2e-90 seq30416 224 3e-55 seq6912 154 4e-34 seq7943 114 4e-22 seq15215 80.6 8e-12 >seq197 Length=2052443 Score = 342 bits (378), Expect = 2e-90 Identities = 529/747 (71%), Gaps = 20/747 (3%) Strand=Plus/Minus Query 1039 GAAAAATGGATGCTCGGTGATCCAGACTCATACATTCAACACATAGCAAATCCAGGTGGT 1098 ||||| |||||| | | || ||||| ||||| |||||||| ||||| ||||| || Sbjct 1661630 GAAAACTGGATGGTTGAAGAGCCAGAGAGCTACATACAACACATTGCAAACCCAGGAGGA 1661571 Query 1099 GAGTCAGTTATAAAAGCAACTATGGACATTGTAACTCTCAAAATGGCAACAGAAAAAACA 1158 || | | |||||| | | ||||| || ||| || | |||||||| | | ||| Sbjct 1661570 GAAATAATAATAAAAACCATAATGGAAATGGTACTACTTAGAATGGCAAAATTTATGACA 1661511 Query 1159 GCATACCAACTAATCATAGAACATGAAGGCCCACAACTAGACAAACCAA---GAAAATGC 1215 || || ||||||| |||| | ||| || | | | |||||||| |||||| | Sbjct 1661510 GCCTATGAACTAATTGCAGAAAA---AGGATCAGA-CAAACCAAACCAACTAGAAAATAC 1661455 Query 1216 -AAAGCATGGAAACTAATCAAAAACAACAAAATGAATCCATACAAAGTTTACCATGCAAT 1274 |||| || ||| || | | | ||||| ||||||| ||||| ||||| || Sbjct 1661454 TAAAGTATTCAAAATACTAAGACTAAACAACTACAATCCATTTAAAGTAATGCATGCTAT 1661395 Query 1275 GAGCTGTTGCCTTAACAAACAACTAGGCAAACGAAACACAATCCTACTATGTGGACCTGC 1334 | ||| || || |||||| |||| ||| | ||||| ||| |||||| ||||| || Sbjct 1661394 AATGTGTGTGCTAAATAAACAATTAGGAAAAAGGAACACCATCTTACTATCAGGACCAGC 1661335 Query 1335 AAGTACAGGCAAAAGCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAATGTTGGATG 1394 ||| ||||| ||||| || | |||||| |||| || ||||||||||||| ||||| Sbjct 1661334 AAGCACAGGAAAAAGTCTGATTGCACAAAAAATTTGTGAATTAGTTGGTAATGTAGGATG 1661275 Query 1395 CTATAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAACCTAATCTG 1454 ||| || || ||| |||||||||||||| |||||| ||| ||||||| |||| || Sbjct 1661274 CTACAACCCAAGCAATGTAAACTTTCCATTCAGTGACTGCTGCAGCAAAAACATAATATG 1661215 Query 1455 GGTAGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCAATTATGAGTGG 1514 | | |||||||| | ||||| || |||||||||||||||||||| || ||| || Sbjct 1661214 GATTGAAGAAGCAAGAAACTTAGGACACCAAGTAAACCAATTTAAAGCCATAATGTCAGG 1661155 Query 1515 CCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGT 1574 || ||||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||| Sbjct 1661154 ACAATCAATCAGACTAGATCAAAAAGGAAAAGGAAGCAAATCAATGGAACCAACACCAGT 1661095 Query 1575 CATTATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAACTAAAACCAGA 1634 ||| ||||| | ||||||||||| ||| ||| | | || | |||| || |||||| Sbjct 1661094 CATAATGACATCAAATGAAGATATAACAGTAGTAAGAATAGGATGTGAAACAAGACCAGA 1661035 Query 1635 ACACAAACAACCTATCATGGACAGATGTGTCAGAATCTATCTAAACAATAGACTAAATGG 1694 ||||| |||| || || ||||||| | ||| | ||| || || || ||| Sbjct 1661034 ACACAGCGAACCAATATAACACCGATGTGTAAACATCAAATTAACAAAAAGTTTAGATGA 1660975 Query 1695 TGACTTTGGTTTGCTTGAACACAAT---GAAATTCCAAGCATATTCAAACACTTGATCAG 1751 | ||||| || ||||||| ||||| |||| || |||||| ||| | | Sbjct 1660974 TAGATTTGG---ACTAATACACAATGAAGAAATACCAAATATTTTCAAA-ACTCTAGAA- 1660920 Query 1752 TAAA---GGATTTGAACCAACAATGGC 1775 ||| |||| | | ||||||||||| Sbjct 1660919 -AAACTTGGATATCATCCAACAATGGC 1660894 Score = 96.9 bits (106), Expect = 1e-16 Identities = 206/302 (68%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 2493 CTCTACCATATAGGTTGGACTCTACCTGGATACAACTATCTAGGACCGGGTAACAA---C 2549 |||| | || ||| | || ||||| |||||||| || || ||||| || |||| | Sbjct 1660460 CTCTGGCTTACAGGATACACACTACCCGGATACAAATACCTCGGACCAGGAAACACATTC 1660401 Query 2550 AACTTTAAGAAGAAACCTACAAATCCATCTGACAAAGCCGCACGCAAACACGATTTAGAA 2609 || ||| |||| || || || | || ||||| || |||||| | | | Sbjct 1660400 GACC--AAGGAGAA-CCAACTAACGAAAGCGATAAAGCTGCCAAAAAACACAACGAACAT 1660344 Query 2610 TACAGCAAACTTATCCAACAAGGACA---CAATCCATACATCTACTTCAACCAAGCCGAC 2666 ||| || | |||| ||| ||| | | |||||| ||||| |||| ||| |||| ||| Sbjct 1660343 TAC--CATA-TTATACAAGAAGCAGAAAACAATCCTTACATAAACTTTAACGAAGCAGAC 1660287 Query 2667 GACGACTTCATCAAAAACACTGACCAAGCACCAGACTGGGGTGGTAAGTTCGGTAACTTT 2726 | ||||||||||| |||| || ||||| |||||| || ||| | | || || Sbjct 1660286 AAAAACTTCATCAAAGACACAGAACAAGCTAAAGACTGAGGAGGTTGGATTGGAAATAAG 1660227 Query 2727 GCCTTCAGACTAAAAAAGGCAATAGCACCTGAACTGGCACCTCCAGCaaaaaaaccaaaa 2786 || || | ||||||| | ||||||||| ||||||| || ||| ||||||| |||| Sbjct 1660226 GCGTTTAAACTAAAACAACTAATAGCACCAGAACTGGAACTACCAAACAAAAAACAAAAA 1660167 Query 2787 aC 2788 || Sbjct 1660166 AC 1660165 >seq30416 Length=3671673 Score = 224 bits (248), Expect = 3e-55 Identities = 352/498 (71%), Gaps = 7/498 (1%) Strand=Plus/Minus Query 1249 AATCCATACAAAGTTTACCATGCAATGAGCTGTTGCCTTAACAAACAACTAGGCAAACGA 1308 |||||| | || ||| ||||| || | ||| | ||||||||||| || ||| || Sbjct 1913086 AATCCAAATAAGGTTATACATGCTATAATGTGTGTGATAAACAAACAACTGGGGAAAAGA 1913027 Query 1309 AACACAATCCTACTATGTGGACCTGCAAGTACAGGCAAAAGCCT-ACTAGCACAAGAAAT 1367 ||| ||| || ||| ||| || |||| ||| |||| || | | |||||| || | Sbjct 1913026 CACAAAATACTCCTACAATGACTAGCTAGTATAGGAAAAAAACTTAATTGCACAAAAATT 1912967 Query 1368 AGCAAAACTAGTTGGTAATGTTGGATGCTATAATGCAGCAAATCAAAACTTTCCATTCAA 1427 | | ||||||||||||| ||||||||||| || | ||| ||||||||| ||||| Sbjct 1912966 TGTGATT-TAGTTGGTAATGTAGGATGCTATAACCCATCTAATGTAAACTTTCCTTTCAA 1912908 Query 1428 TGACTGTAGCAACAAAAACC-TAATCTGGGTAGAAGAAGCTGGTAACTTTGGTGTACAAG 1486 ||| || |||| ||||| | |||| | | | |||||||| || ||||| || ||||| Sbjct 1912907 TGATTGATGCAATAAAAAACATAATTTAGATGGAAGAAGCAGGGAACTTAGG---ACAAG 1912851 Query 1487 TAAACCAATTTAAAGCAATTATGAGTGGCCAGGCAATCAGACTAGACCAAAAAGGCAAAG 1546 ||||||||||||||||||||||| || || || | | || ||||||| |||| Sbjct 1912850 TAAACCAATTTAAAGCAATTATGTCAGGACAAAGTATTAACCCGGATCAAAAAGAAAAAG 1912791 Query 1547 GCAGCAAATCAATTGAACCAACTCCAGTCATTATGACTACTAATGAAGATATCACAAGAG 1606 |||| ||||||||||| ||||||||||| || |||| ||||||||||||| || || Sbjct 1912790 GCAGTAAATCAATTGAGCCAACTCCAGTAATGATGATATCTAATGAAGATATAACTTGAA 1912731 Query 1607 TCATGGTTGGTTCT-GAACTAAAACCAGAACACAAACAACCTATCATGGACAGATGTGTC 1665 | | |||| | | ||| ||| |||||| || | |||| || | | || | ||| Sbjct 1912730 TAAGAATTGGCTGTAGAAATAAGACCAGAGCATATTGAACCAATAAAACAAAGCTATGTT 1912671 Query 1666 AGAATCTATCTAAACAATAGACTAAATGGTGACTTTGGTTTGCTTGAACACAATGAAATT 1725 | || | | | || | ||||||||| | |||| | | | | || ||||||| Sbjct 1912670 AACATAAAAGTCACAAAAACTTTAAATGGTGGGTGTGGTATTATAGGAGACCATGAAATA 1912611 Query 1726 CCAAGCATATTCAAACAC 1743 |||| ||| || ||| || Sbjct 1912610 CCAAACATCTTTAAAAAC 1912593 >seq6912 Length=926260 Score = 154 bits (170), Expect = 4e-34 Identities = 218/304 (72%), Gaps = 7/304 (2%) Strand=Plus/Minus Query 1285 CTTAACAAACAACTAGGCAAACGAAACACAATCCTACTATGTGGACCTGCAAGTACAGGC 1344 || || ||| | || || ||| ||||||| || |||||| |||| || | | ||| Sbjct 471733 CTAAATAAATAGCTTGGTAAAAGAAACACGATAGTACTATAGGGACTAGCTACCATAGGA 471674 Query 1345 AAAAGCCTACTAGCACAAGAAATA---GCAAAACTAGTTGGTAATGTTGGATGCTATAAT 1401 ||||| ||| |||| | | ||| | | || | || ||| ||||||||| | || ||| Sbjct 471673 AAAAGTCTAATAGCTCCAAAAAAATGTGAAATATTACTTGCTAATGTTGGGTTGTACAAT 471614 Query 1402 GCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAACCTAATCTGGGTAGAA 1461 || ||||| ||||||||| |||||||| | | |||||| |||| || | ||| ||||| Sbjct 471613 CCATCAAATGTAAACTTTCCTTTCAATGATTATTGCAACAGAAACATATTGTGGATAGAA 471554 Query 1462 GAAGCTGGTAACTTTGGT--GTACAAGTAAACCAATTTAAAGCAATTATGAGTGGCCAGG 1519 || | | ||||| || || | ||| ||||||||||||||| ||| || || Sbjct 471553 GAGGTAAGAAACTTAGGCCAGTTAATGTA--CCAATTTAAAGCAATAATGTCAGGACAAT 471496 Query 1520 CAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGTCATTA 1579 || || ||||| |||| | |||||||||||||| |||||||||| |||| | || Sbjct 471495 GTATTAGGCTAGATTCAAAAAGAAAAGGCAGCAAATCCATTGAACCAAAACCAGGAAATA 471436 Query 1580 TGAC 1583 |||| Sbjct 471435 TGAC 471432 >seq7943 Length=141820 Score = 114 bits (126), Expect = 4e-22 Identities = 242/360 (67%), Gaps = 26/360 (7%) Strand=Plus/Plus Query 1285 CTTAACAAACAACTAGGCAAACGAAACA------CAATCCTACTATGTGGACCTGCAAGT 1338 || |||| | ||||||| ||| ||| | |||| ||||| ||||| || Sbjct 121560 CTAAACAGATAACTAGGAAAAGAAAATATTACTACAATATTACTACAAGGACCACTCAGC 121619 Query 1339 ACAGGCAAAA-GCCTACTAGCACAAGAAATAGCAAAACTAGTTGGTAATGTTGGATGCTA 1397 ||||| |||| | || |||||||| ||||| | ||||||||||||| ||| ||| Sbjct 121620 ACAGGAAAAAAGTTTAATAGCACAATAAATATGTGAGTTAGTTGGTAATGTAAGATACTA 121679 Query 1398 TAATGCAGCAAATCAAAACTTTCCATTCAATGACTGTAGCAACAAAAACCTAATCTGGGT 1457 || | || | || ||||||| || || || || | |||||| |||| | | | Sbjct 121680 TAGTACATCTTATGTTAACTTTCAAT-CATTGC---TACAATAAAAAACATAATATAGAT 121735 Query 1458 AGAAGAAGCTGGTAACTTTGGTGTACAAGTAAACCAATTTAAAGCAATTATGAGTGGCCA 1517 ||||||||| | ||||| || ||| |||||| ||| ||| || || Sbjct 121736 AGAAGAAGCAGAAAACTTAGGA------------CAAATTAAAGTAATAATGTCAGGACA 121783 Query 1518 GGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCAGTCAT 1577 || |||||| | ||||| ||||||||||||| |||||||||||||||||| | Sbjct 121784 AAGTATTAGACTAAATAAAAAA---AAAGGCAGCAAATTAATTGAACCAACTCCAGTAGT 121840 Query 1578 TATGACTACTAATGAAGATATCACAAGAGTCATGGTTGGTTCTGAACTAAAACCAGAACA 1637 ||||||| |||||| | || || | |||| ||| | |||| | | | ||||||| Sbjct 121841 TATGACTTTCAATGAATACATTACTTGTGTCAGAATTGAATGTGAAATTAGAGCAGAACA 121900 >seq15215 Length=4605142 Score = 80.6 bits (88), Expect = 8e-12 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 1513 GGCCAGGCAATCAGACTAGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACCAACTCCA 1572 || || ||| || | ||||||||||||| ||| | || | | | | |||||||| |||| Sbjct 4354678 GGACAAGCAGACAAAATAGACCAAAAAGGAAAAAGAAGTAGAACTACTGAACCAATTCCA 4354737 Query 1573 GTCATTATGACTACTAATGAAGATATC-ACAAGAGTCATGGTTGGTTCTGAACTAA 1627 || || ||||| ||||||||| ||||| || || |||| |||| | |||||||| Sbjct 4354738 GTAATAATGACCACTAATGAAAATATCAACGAG-GTCAGAATTGGCTGTGAACTAA 4354792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14727003149640