Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq32895 167 8e-38 >seq32895 Length=128 Score = 167 bits (184), Expect = 8e-38 Identities = 98/102 (96%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 4672 GCGCGCAAAATATCCTCTTGTCCTTGAGTCTCATTGGAGGGTTCGTTCGTTCGAACCAGC 4731 ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 106 GCGCGCAAAATGTCCTGCTGTCCTTGAGTCTCATTGGAGGGTTCGTTCGTTCGAACCAGC 47 Query 4732 CAATCAGGGGAGGGGGAAGTGACGCAAGTTCCGGTCACATGC 4773 |||||||||||||||||||||||||||||||||||||| ||| Sbjct 46 CAATCAGGGGAGGGGGAAGTGACGCAAGTTCCGGTCACGTGC 5 Score = 145 bits (160), Expect = 2e-31 Identities = 85/88 (97%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 348 CTTGCGTCACTTCCCCCTCCCCTGATTGGCTGGTTCGAACGAACGAACCCTCCAATGAGA 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19 CTTGCGTCACTTCCCCCTCCCCTGATTGGCTGGTTCGAACGAACGAACCCTCCAATGAGA 78 Query 408 CTCAAGGACAAGAGGATATTTTGCGCGC 435 |||||||||| |||| ||||||||||| Sbjct 79 CTCAAGGACAGCAGGACATTTTGCGCGC 106 Score = 127 bits (140), Expect = 7e-26 Identities = 72/73 (99%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 1 CTCATTGGAGGGTTCGTTCGTTCGAACCAGCCAATCAGGGGAGGGGGAAGTGACGCAAGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 CTCATTGGAGGGTTCGTTCGTTCGAACCAGCCAATCAGGGGAGGGGGAAGTGACGCAAGT 18 Query 61 TCCGGTCACATGC 73 ||||||||| ||| Sbjct 17 TCCGGTCACGTGC 5 Score = 109 bits (120), Expect = 2e-20 Identities = 60/60 (100%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 5047 CTTGCGTCACTTCCCCCTCCCCTGATTGGCTGGTTCGAACGAACGAACCCTCCAATGAGA 5106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19 CTTGCGTCACTTCCCCCTCCCCTGATTGGCTGGTTCGAACGAACGAACCCTCCAATGAGA 78 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16213269557320