Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq32895 168 2e-38 >seq32895 Length=128 Score = 168 bits (186), Expect = 2e-38 Identities = 100/103 (97%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 4688 GCGCGCAAAAAGTCCTGCTGTCCTTGAGTCTCATTGGAGGGTTCGTTCGTTCGAACCAGC 4747 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 GCGCGCAAAATGTCCTGCTGTCCTTGAGTCTCATTGGAGGGTTCGTTCGTTCGAACCAGC 47 Query 4748 CAATCAGGGGAGGGGGGAAGTGACGTAAGTTCCGGTCACGTGC 4790 |||||||||||| |||||||||||| ||||||||||||||||| Sbjct 46 CAATCAGGGGAG-GGGGAAGTGACGCAAGTTCCGGTCACGTGC 5 Score = 143 bits (158), Expect = 9e-31 Identities = 86/89 (97%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 358 CTTACGTCACTTCCCCCCTCCCCTGATTGGCTGGTTCGAACGAACGAACCCTCCAATGAG 417 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 19 CTTGCGTCACTTCCCC-CTCCCCTGATTGGCTGGTTCGAACGAACGAACCCTCCAATGAG 77 Query 418 ACTCAAGGACAGCAGGACTTTTTGCGCGC 446 |||||||||||||||||| |||||||||| Sbjct 78 ACTCAAGGACAGCAGGACATTTTGCGCGC 106 Score = 122 bits (134), Expect = 3e-24 Identities = 72/74 (97%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 1 CTCATTGGAGGGTTCGTTCGTTCGAACCAGCCAATCAGGGGAGGGGGGAAGTGACGTAAG 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 77 CTCATTGGAGGGTTCGTTCGTTCGAACCAGCCAATCAGGGGAG-GGGGAAGTGACGCAAG 19 Query 61 TTCCGGTCACGTGC 74 |||||||||||||| Sbjct 18 TTCCGGTCACGTGC 5 Score = 95.1 bits (104), Expect = 4e-16 Identities = 57/59 (97%), Gaps = 1/59 (2%) Strand=Plus/Plus Query 5074 CTTACGTCACTTCCCCCCTCCCCTGATTGGCTGGTTCGAACGAACGAACCCTCCAATGA 5132 ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 19 CTTGCGTCACTTCCCC-CTCCCCTGATTGGCTGGTTCGAACGAACGAACCCTCCAATGA 76 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16296398133240