Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_002361.1 Length=2037 Score E Sequences producing significant alignments: (Bits) Value seq42 118 1e-23 >seq42 Length=6121031 Score = 118 bits (130), Expect = 1e-23 Identities = 274/410 (67%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 441 ACCGGAGCGATCTCAGCGAGGCTGTTGCCGCGGTGAAAGCCGGAAGAGCAATGACCGAGG 500 ||||||| | |||| | |||| |||||| |||| ||||||| |||| |||| Sbjct 4240310 ACCGGAGTGGCCTCACGGGAGCTGCTGCCGCCATGAAGGCCGGAACTAAAATGGCCGAAC 4240369 Query 501 TCGCGCGAGACTTCAGTGAGATATACGTCAAATATGGGCGTGGCTTGCGCGACCTGAAGC 560 | |||||||| ||| || |||||||| | ||||||| | | | || |||| | Sbjct 4240370 TTGCGCGAGAGTTCCCGAAGCC-TACGTCAAGTG-GGGCGTGACCTCAGAGATCTGAGAC 4240427 Query 561 TGCTGATTGGTCAGCAGCCCCGTGACTTCAAAACGGAAGTCATCGTCATCACGGGCCCGC 620 | |||||||| ||||| || || | || ||||| |||||| ||| | | ||||| | Sbjct 4240428 TCCTGATTGGCCAGCAACCACGCAATTTAAAAACTGAAGTCTGCGTGCTGATTGGCCCAC 4240487 Query 621 CCGGTTGCGGGAAGAGCCGTTGGGCAGCTGACTACCCCG-GAAGT--AAATTCTACAAGA 677 | | || || |||||||||||||| || || || | | || | | | ||| | Sbjct 4240488 CAGAGTGAGGCAAGAGCCGTTGGGCCGC---CTCCCATGAGGGGTCATACTCCCACAGGG 4240544 Query 678 TGAAGGGTGAATGGTGGGA-----CGGG-----------TACGACCACCAGGAAGTAGTC 721 |||||||||||||| |||| || || | || || Sbjct 4240545 CCCGCGGTGAATGGTGGGACAATGCGGGATGGCTGTGAAGGGGAAAACAAAGACAGAGCA 4240604 Query 722 ATCATTGATGACTTCTACGGCTGGCTGCCCTTCTGTGAGCTGCTGCGTGTGACCGACCGG 781 |||| |||||||||||| ||||||| | |||||||||||||| || |||||||||| Sbjct 4240605 GTCATGGATGACTTCTACAGCTGGCTCCTTTTCTGTGAGCTGCTCCGGCTGACCGACCGC 4240664 Query 782 TACCCGCATAAGGTGCCCGTGAAAGG------GGCCTTTGTGGAGTTCAC 825 || || ||||| || || ||||| || |||||||| || ||||| Sbjct 4240665 TATCCACATAAAGTCCCTGTGAATGGAATTCCTGCCTTTGTAGAATTCAC 4240714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6407744969622