Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_008033.1 Length=2063 Score E Sequences producing significant alignments: (Bits) Value seq42 98.7 1e-17 >seq42 Length=6121031 Score = 98.7 bits (108), Expect = 1e-17 Identities = 389/604 (64%), Gaps = 41/604 (7%) Strand=Plus/Plus Query 208 AAGAAA-AAAGTGAGACTCACAAGCCTTAAAAAAGTGCTGCAAAGAGCTCACTGGGAGAA 266 |||||| |||| ||||| ||| || ||||||||| ||| |||| ||| ||| Sbjct 4240172 AAGAAAGAAAGAAAGACTGACAGCACTGAAAAAAGTGTTGCT--GAGCCCACCTGGAAGT 4240229 Query 267 GGCCCGAGGCAGTGATGAAGATAATGAGAAATACTGCAGTAAAGAGGGGGAC---GTGAT 323 ||||| || || |||| || ||| | |||| ||| ||||| | ||| ||| Sbjct 4240230 TGCCCGTGGGTCCCATAAAGACAACGAGCAGTACTACAGCAAAGACAGTGACCGGGTGGG 4240289 Query 324 ACTCACGATCGGCATACCAGTGAAGGGAAACCGGAGCGACCTTGCCGGAGCTGTTGCCGC 383 || | | ||| ||| || | |||||| | ||| | ||||||| |||||| Sbjct 4240290 GATCCCTGTGGGC-------TGAGGGCA--CCGGAGTGGCCTCACGGGAGCTGCTGCCGC 4240340 Query 384 TGTGAAAGCCGGAAGAGGAATGAGTGAGATCGCGCGAGAGTTCAGTGAGACTTACGTCAG 443 |||| ||||||| |||| || | |||||||||||| || | ||||||| Sbjct 4240341 CATGAAGGCCGGAACTAAAATGGCCGAACTTGCGCGAGAGTTC-CCGAAGCCTACGTCA- 4240398 Query 444 ATATGGGCGGGGCCTCCGGGATCTAGCCCTTCTGATTGGTCAGAAGCAACGTGACTTCAA 503 | ||||| | |||| | ||||| || |||||||| ||| | | ||| | || || Sbjct 4240399 AGTGGGGCGTGACCTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCACGCAATTTAAA 4240458 Query 504 GACGGAAGTTACCGTGCTTACTGGCCCTTCAG-GTGTGGGCAAGTCCCGGTGGGCCAATG 562 || ||||| |||||| | |||||| ||| ||| |||||| ||| |||||| Sbjct 4240459 AACTGAAGTCTGCGTGCTGATTGGCCCACCAGAGTG-AGGCAAGAGCCGTTGGGCCGCCT 4240517 Query 563 AACAAGTTGGGACAAAGTTCTATAAAATGAAAGGTGATTGGTGGGA------TGGAT-AC 615 || | ||| || | | | | | ||||| |||||||| |||| | Sbjct 4240518 CCCATGAGGGGTCATACTCCCACAGGGCCCGCGGTGAATGGTGGGACAATGCGGGATGGC 4240577 Query 616 TG---------CAATGAGGATATAGTAATCATTGATGATTTCTATGGGTGGATACCCTTC 666 || || | || | || | |||| ||||| ||||| | ||| | | ||| Sbjct 4240578 TGTGAAGGGGAAAACAAAGACAGAGCAGTCATGGATGACTTCTACAGCTGGCTCCTTTTC 4240637 Query 667 TGTGAGCTGCTGAGACTGTGTGATCGATACCCACATAAGGTGCCCGTCAAGGG------G 720 ||||||||||| | ||| || || || |||||||| || || || || || Sbjct 4240638 TGTGAGCTGCTCCGGCTGACCGACCGCTATCCACATAAAGTCCCTGTGAATGGAATTCCT 4240697 Query 721 TCCTATGTGGAGTTCAACAGCAAGCAGATCATCATTACCAGTAACACCCCACCGGACTCG 780 ||| ||| || |||| |||||| |||||||| ||||| |||| ||||||| | Sbjct 4240698 GCCTTTGTAGAATTCACAAGCAAGATCATCATCATGACCAGCAACAAGATGCCGGACTAG 4240757 Query 781 TGGT 784 |||| Sbjct 4240758 TGGT 4240761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6490920890346