Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_008522.1 Length=1962 Score E Sequences producing significant alignments: (Bits) Value seq42 113 6e-22 >seq42 Length=6121031 Score = 113 bits (124), Expect = 6e-22 Identities = 204/296 (69%), Gaps = 18/296 (6%) Strand=Plus/Plus Query 266 GCCCGTGGTTCCGATGAGGACAATGAGCAGTATTGCGGCAAGGAGGGGGACGTTATACTC 325 |||||||| ||| || | ||||| |||||||| | | |||| || | ||| Sbjct 4240231 GCCCGTGGGTCCCATAAAGACAACGAGCAGTACTACAGCAAAGACAGTGAC--------- 4240281 Query 326 ACCATTGGGGTTCCTT-----CAAAGGGTAACCGGAGTGACCTTGCCGGAGCTGTTGCCG 380 | ||||| ||| | | |||| | |||||||| ||| | ||||||| ||||| Sbjct 4240282 -CGGGTGGGGATCCCTGTGGGCTGAGGGCA-CCGGAGTGGCCTCACGGGAGCTGCTGCCG 4240339 Query 381 CCGTGAAAGCCGGAAGAGGTATGGCCGAAGTCGCGCGAGAGTTCAGTCTAGCCTACGTCA 440 || |||| ||||||| ||||||||| | |||||||||||| ||||||||||| Sbjct 4240340 CCATGAAGGCCGGAACTAAAATGGCCGAACTTGCGCGAGAGTTC-CCGAAGCCTACGTCA 4240398 Query 441 GATATGGGCGGGGCCTGCGTGATCTTGCGCTGCTGATTGGCCAGAAGCCCCGTGACTTCA 500 | ||||| | ||| | ||||| || |||||||||||| | || || | || | Sbjct 4240399 -AGTGGGGCGTGACCTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCACGCAATTTAA 4240457 Query 501 AAACGGAAGTCATAGTGCTGACCGGCCCTAGTGGGTGTGGCAAATCCCGCTGGGCC 556 |||| |||||| ||||||| ||||| | ||| ||||| ||| |||||| Sbjct 4240458 AAACTGAAGTCTGCGTGCTGATTGGCCCACCAGAGTGAGGCAAGAGCCGTTGGGCC 4240513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6167814429072