Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_026945.1 Length=1982 Score E Sequences producing significant alignments: (Bits) Value seq42 138 1e-29 >seq42 Length=6121031 Score = 138 bits (152), Expect = 1e-29 Identities = 344/521 (66%), Gaps = 30/521 (6%) Strand=Plus/Plus Query 266 GCCCGGGGTTCCGATGAGGATAATGAGCAGTATTGCAGCAAAGAAGGGGACGTGATACTT 325 ||||| || ||| || | || || |||||||| | ||||||||| | ||| | | Sbjct 4240231 GCCCGTGGGTCCCATAAAGACAACGAGCAGTACTACAGCAAAGACAGTGACCGGGTGGGG 4240290 Query 326 ACCATTGGGGCCCCCGCAAAAGGCAATCGGAGTGACCTTGCCGGAGCTGTTGCCGCCGTG 385 | | || || || | |||| ||||||| ||| | ||||||| ||||||| || Sbjct 4240291 ATCCCTGTGG-----GCTGAGGGCAC-CGGAGTGGCCTCACGGGAGCTGCTGCCGCCATG 4240344 Query 386 AAAGCCGGAAGACCAATGACGGAAGTCGCGCGAGAGTTCAGTGAAGCCTACGTCAAGTGG 445 || ||||||| |||| | ||| | |||||||||||| |||||||||||||||| | Sbjct 4240345 AAGGCCGGAACTAAAATGGCCGAACTTGCGCGAGAGTTC-CCGAAGCCTACGTCAAGT-G 4240402 Query 446 GGGCGTGGCCTGAAGGATCTGGCACTGATGATTGGCCAGAAGCCCCGTGACTTCAAGACG 505 ||||||| ||| | |||||| ||| ||||||||||| | || || | || || || Sbjct 4240403 GGGCGTGACCTCAGAGATCTGAGACTCCTGATTGGCCAGCAACCACGCAATTTAAAAACT 4240462 Query 506 GAGGTGATTGTGTTGACCGGCCCCTCGGGGGTGGGGAAGAGCCGCTGGGCCAATGAACAG 565 || || ||| ||| ||||| | | | || |||||||| |||||| || Sbjct 4240463 GAAGTCTGCGTGCTGATTGGCCCACCAGAGTGAGGCAAGAGCCGTTGGGCCGCCTCCCAT 4240522 Query 566 GAAGGTACGAAATACTACAAGATGAAGGGTGATTGGTGGGAC------GGAT-------- 611 || || | | | | ||| | ||||| ||||||||| |||| Sbjct 4240523 GAGGGGTCATACTCCCACAGGGCCCGCGGTGAATGGTGGGACAATGCGGGATGGCTGTGA 4240582 Query 612 --ATTCAAACGAAGACATCGTGGTGATTGACGACTTCTATGGGTGGATCCCGTTCTGTGA 669 |||| |||||| | || || || |||||||| | ||| ||| |||||||| Sbjct 4240583 AGGGGAAAACAAAGACAGAGCAGTCATGGATGACTTCTACAGCTGGCTCCTTTTCTGTGA 4240642 Query 670 GCTGCTCCGCCTTTGTGATCGTTATCCCCACAAAGTGCCAGTCAAAGGCA------GCTA 723 ||||||||| || || || ||||| || ||||| || || || || | || Sbjct 4240643 GCTGCTCCGGCTGACCGACCGCTATCCACATAAAGTCCCTGTGAATGGAATTCCTGCCTT 4240702 Query 724 CGTGGAGTTTACGTCAAAGAAGATCATCATCACGAGCAACA 764 || || || || |||| |||||||| || ||||||| Sbjct 4240703 TGTAGAATTCACAAGCAAGATCATCATCATGACCAGCAACA 4240743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6231795906552