Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geospiza_20fortis_20[refseq_20GCF_5F000277835.1_202012-07-25] 27,239 sequences; 1,065,292,181 total letters Query= NC_030199.1 Length=1939 Score E Sequences producing significant alignments: (Bits) Value seq42 131 2e-27 >seq42 Length=6121031 Score = 131 bits (144), Expect = 2e-27 Identities = 158/211 (75%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 358 AGGGCAACCGGAGCGACCTGTCGGGAGCTGTTGCCGCCGTGAAAGCCGGAAGAGCAATGA 417 |||||| |||||| | ||| ||||||||| ||||||| |||| ||||||| |||| Sbjct 4240305 AGGGCA-CCGGAGTGGCCTCACGGGAGCTGCTGCCGCCATGAAGGCCGGAACTAAAATGG 4240363 Query 418 GCGAGATCGCGCGAGAGTTCAGTGAAGTTTACGTCAAGTATGGGCGTGGCCTAAGAGATC 477 ||| | |||||||||||| |||| |||||||||| ||||||| ||| ||||||| Sbjct 4240364 CCGAACTTGCGCGAGAGTTCCC-GAAGCCTACGTCAAGTG-GGGCGTGACCTCAGAGATC 4240421 Query 478 TGGCTCTCCTGATTGGTCAGAAACCACGTGACTTCAAGACTGACGTCATACTGATAACTG 537 || ||||||||||| ||| ||||||| | || || ||||| ||| || | | || Sbjct 4240422 TGAGACTCCTGATTGGCCAGCAACCACGCAATTTAAAAACTGAAGTCTGCGTGCTGATTG 4240481 Query 538 GCCCCTCGGGGGTGGGGAAAAGCCGTTGGGC 568 |||| | | | || || ||||||||||| Sbjct 4240482 GCCCACCAGAGTGAGGCAAGAGCCGTTGGGC 4240512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6094235729970