Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 3e-17 >seq1 Length=64048162 Score = 98.7 bits (108), Expect = 3e-17 Identities = 208/306 (68%), Gaps = 7/306 (2%) Strand=Plus/Plus Query 2823 TGGCGCACCAATGGCAGACAATAACGAGGGCGCCGACGGAGTGGGTAATTCCTCGGGAAA 2882 ||| | |||||||| |||| | | || || ||| ||| | ||||||||| ||||| Sbjct 57516300 TGGGGTACCAATGGGCAACAACACACAAGGTGCTGACAGAGAGAGTAATTCCTTGGGAAG 57516359 Query 2883 TTGGCATTGCGATTCCACATGGATGGGCGACAGAGTCATCACCACCAGCACCCGAACCTG 2942 ||| |||||||| | | || | ||||||||||| | ||| |||| | Sbjct 57516360 GCGGCGCTGCGATTCTGAGTAATTTGG--AAAGAGTCATCACGAAATCCACTTGAACTCG 57516417 Query 2943 GGCCCTGCCCACCTACAACAACCACCTCTACAAACAAATTTCCAGCCAATCAGGAGCCTC 3002 | | |||| ||||||||| | ||||||||| ||| | | || |||| | Sbjct 57516418 TGTCTTGCCTGACTACAACAATCCTCTCTACAAATCCATTGCTGG---ATGAGGACCAGA 57516474 Query 3003 GAACGACAATCACTACTTTGGCTACAGCACCCCTTGGGGGTATTTTGACTTCAACAGATT 3062 || |||| || | ||| | || ||| | ||||| ||||||||||| ||| |||| Sbjct 57516475 CAATAACAACTCCTGTTCTGGATTCACCACACTGTGGGGATATTTTGACTTTAACTGATT 57516534 Query 3063 CCACTGCCACTTT-TCACCACGTGACTGGCAAAGACTCATCAACAACAACTGGGGATTCC 3121 | ||| |||||| ||||| | |||||||| |||||||||||| || || |||| Sbjct 57516535 CTGCTGTCACTTTAGCACCA-GACACTGGCAACAGCTCATCAACAACCACCGGCCATTCA 57516593 Query 3122 GACCCA 3127 |||||| Sbjct 57516594 GACCCA 57516599 Score = 95.1 bits (104), Expect = 4e-16 Identities = 116/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 4006 CCAGGCATGGTCTGGCAGGACAGAGATGTGTACCTTCAGGGG-CCCATCTGGGCAAAGAT 4064 || |||||| |||| ||| ||||||||| || ||| | ||||| | ||| || || Sbjct 57516962 CCTGGCATGAACTGGATGGATCAAGATGTGTATCTGCAGAGAACCCATATTGGCCAAAAT 57517021 Query 4065 TCCACACACGGACGGACATTTTCACCCCTCTCCCCTCATGGGTGGATTCGGACTTAAACA 4124 ||| |||| || ||||||||||| || | | |||||||| | ||| || || ||||| Sbjct 57517022 TCCGGACACAGATGGACATTTTCATCC--CAGCTCTCATGGGAGAATTTGGTCTCAAACA 57517079 Query 4125 CCCTCCTCCACAGATTCTCATCAAGAACACCCCGGT 4160 || |||||||| |||||| | || ||||| || || Sbjct 57517080 TCCCCCTCCACAAATTCTCCTGAAAAACACACCAGT 57517115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14858310699900