Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 7e-13 >seq1 Length=64048162 Score = 84.2 bits (92), Expect = 7e-13 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 4064 CCCATTTGGGCCAAAATTCCACACACGGATGGACACTTTCACCCGTCTCCTCTCATTGGC 4123 ||||| | |||||||||||| |||| |||||||| ||||| || | ||||||| || Sbjct 57517005 CCCATATTGGCCAAAATTCCGGACACAGATGGACATTTTCATCC--CAGCTCTCATGGGA 57517062 Query 4124 GGATTTGGACTGAAAAGCCCGCCTCCACAAATATTCATCAAAAACACTCCTGT 4176 | |||||| || ||| || ||||||||||| || | |||||||| || || Sbjct 57517063 GAATTTGGTCTCAAACATCCCCCTCCACAAATTCTCCTGAAAAACACACCAGT 57517115 Score = 82.4 bits (90), Expect = 2e-12 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 3014 GGATTCTCCACCCCCTGGGGATACTTTGACTTTAACCGCTTCCACTGCCACTTCTCGC-C 3072 |||||| |||| | |||||||| |||||||||||| | ||| ||| ||||| | || | Sbjct 57516494 GGATTCACCACACTGTGGGGATATTTTGACTTTAACTGATTCTGCTGTCACTT-TAGCAC 57516552 Query 3073 AAGAGACTGGCAAAGGCTCATCAACAACCACTGG 3106 ||| |||||||| |||||||||||||||| || Sbjct 57516553 CAGACACTGGCAACAGCTCATCAACAACCACCGG 57516586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14903103195550