Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 2e-14 >seq1 Length=64048162 Score = 89.7 bits (98), Expect = 2e-14 Identities = 213/313 (68%), Gaps = 18/313 (6%) Strand=Plus/Plus Query 2845 TGGCGCACCAATGGCAGACAATAACGAAGGTGCCGACGGAGTGGGTAATGCCTCAGGAAA 2904 ||| | |||||||| |||| | ||||||| ||| ||| | ||||| ||| |||| Sbjct 57516300 TGGGGTACCAATGGGCAACAACACACAAGGTGCTGACAGAGAGAGTAATTCCTTGGGAAG 57516359 Query 2905 TTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATTACCACCAGCACCCGAACCTG 2964 ||| |||||||| | | || | |||||||| || | ||| |||| | Sbjct 57516360 GCGGCGCTGCGATTCTGAGTAATTTGG--AAAGAGTCATCACGAAATCCACTTGAACTCG 57516417 Query 2965 GGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAGTGAAACTGCAGGTAG 3024 | | |||| ||||||||| | |||||||| |||| || ||| | | || Sbjct 57516418 TGTCTTGCCTGACTACAACAATCCTCTCTACAAA------TCCATTG---CTGGATG-AG 57516467 Query 3025 TACCA-ACGACAACACCTACT--TC-GGCTACAGCACCCCCTGGGGGTATTTTGACTTTA 3080 |||| || | |||| || || || || | || ||| | ||||| ||||||||||||| Sbjct 57516468 GACCAGACAATAACAACTCCTGTTCTGGATTCACCACACTGTGGGGATATTTTGACTTTA 57516527 Query 3081 ACAGATTCCACTGCCAC-TTCTCACCACGTGACTGGCAGCGACTCATCAACAACAACTGG 3139 || ||||| ||| ||| || ||||| | ||||||| | |||||||||||| || || Sbjct 57516528 ACTGATTCTGCTGTCACTTTAGCACCA-GACACTGGCAACAGCTCATCAACAACCACCGG 57516586 Query 3140 GGATTCCGGCCCA 3152 |||| | |||| Sbjct 57516587 CCATTCAGACCCA 57516599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14992688186850