Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 1e-15 >seq1 Length=64048162 Score = 93.3 bits (102), Expect = 1e-15 Identities = 210/312 (67%), Gaps = 13/312 (4%) Strand=Plus/Plus Query 2744 TGGCGCACCAATGGCAGACAATAACGAAGGCGCCGACGGAGTGGGTAGTTCCTCGGGAAA 2803 ||| | |||||||| |||| | |||| || ||| ||| | ||| ||||| ||||| Sbjct 57516300 TGGGGTACCAATGGGCAACAACACACAAGGTGCTGACAGAGAGAGTAATTCCTTGGGAAG 57516359 Query 2804 TTGGCATTGCGATTCCACATGGCTGGGCGACAGAGTCATCACCACCAGCACCCGAACCTG 2863 ||| |||||||| | | || | ||||||||||| | ||| |||| | Sbjct 57516360 GCGGCGCTGCGATTCTGAGTAATTTGG--AAAGAGTCATCACGAAATCCACTTGAACTCG 57516417 Query 2864 GGCCCTGCCCACCTACAACAACCACCTCTACAAGCAAATCTCCAACGGGACATCGGGAGG 2923 | | |||| ||||||||| | |||||||| |||| | || |||| Sbjct 57516418 TGTCTTGCCTGACTACAACAATCCTCTCTACAAA------TCCATTGCTGGAT---GAGG 57516468 Query 2924 AGCCACCAACGACAACACCTACTTCGGCTACAGCACCCCCTGGGGGTATTTTGACTTTAA 2983 | | ||| ||||| ||| | || | || ||| | ||||| |||||||||||||| Sbjct 57516469 ACCAGACAATAACAACTCCTGTTCTGGATTCACCACACTGTGGGGATATTTTGACTTTAA 57516528 Query 2984 CAGATTCCACTGCCACTTT-TCACCACGTGACTGGCAGCGACTCATCAACAACAACTGGG 3042 | ||||| ||| |||||| ||||| | ||||||| | |||||||||||| || || Sbjct 57516529 CTGATTCTGCTGTCACTTTAGCACCA-GACACTGGCAACAGCTCATCAACAACCACCGGC 57516587 Query 3043 GATTCCGGCCCA 3054 |||| | |||| Sbjct 57516588 CATTCAGACCCA 57516599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13943264003050