Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manacus_20vitellinus_20[refseq_20GCF_5F001715985.1_202016-08-29] 15,315 sequences; 1,213,420,527 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 4e-16 >seq1 Length=64048162 Score = 95.1 bits (104), Expect = 4e-16 Identities = 194/285 (68%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 2901 CAAGGTGCCGACGGAGTGGGCAATTCCTCGGGAAATTGGCATTGCGATTCCCAATGGCTG 2960 |||||||| ||| ||| | | ||||||| ||||| ||| |||||||| | | | Sbjct 57516325 CAAGGTGCTGACAGAGAGAGTAATTCCTTGGGAAGGCGGCGCTGCGATTCTGAGTAATTT 57516384 Query 2961 GACAACGGAGTCGTTACCCGAACCACTCGAACCTGGGTCCTGCCCAGCTACAACAACCAC 3020 | || ||||| | || | ||||| |||| | ||| |||| ||||||||| | Sbjct 57516385 GGAAA--GAGTCATCACGAAATCCACTTGAACTCGTGTCTTGCCTGACTACAACAATCCT 57516442 Query 3021 TTGTACAAGCGGATCCAAGGACCGG--GAGGAACCGACCCCAACAATAAATTCTTTGGAT 3078 | ||||| ||||| | | || ||||| | ||| ||||| | | ||||| Sbjct 57516443 CTCTACAA----ATCCATTG-CTGGATGAGGACCAGACAATAACAACTCCTGTTCTGGAT 57516497 Query 3079 TCAGCACCCCCTGGGGGTACTTTGACTACAACCGATTCCACTGCCACTTCTCCCCCCGAG 3138 ||| ||| | ||||| || ||||||| ||| ||||| ||| ||||| | || || Sbjct 57516498 TCACCACACTGTGGGGATATTTTGACTTTAACTGATTCTGCTGTCACTTTAGCACCAGAC 57516557 Query 3139 ACTGGCAACGACTCATCAACAACAACTGGGGCATCCGACCCAAAG 3183 ||||||||| |||||||||||| || || || |||||| || Sbjct 57516558 ACTGGCAACAGCTCATCAACAACCACCGGCCATTCAGACCCACAG 57516602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14867909091825