Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq39689 188 2e-44 seq35619 118 3e-23 >seq39689 Length=9188 Score = 188 bits (208), Expect = 2e-44 Identities = 403/592 (68%), Gaps = 19/592 (3%) Strand=Plus/Minus Query 1220 CCTTGTTGATTGGCTCATTGAAATGGGGATAACATCTGAGAAGCAATGGCTCACTGAGAA 1279 ||| || || ||| | || || | ||| || || || |||||| ||||||| || | Sbjct 8001 CCTCGTCGACTGGTTAATCGAGAAGGGCATCACGTCCGAGAAGGAATGGCTTTTGGAAGA 7942 Query 1280 CCGAGAGAGCTACAGAAGCTTTCA-AGCAACTTCTTCAAATAATAGACAAGTGAAAGCTG 1338 | | || |||||||||| ||||| | |||| | | |||| | ||| |||| Sbjct 7941 CAAACGTTCCTTTCGAAGCTTTCAGAGCAA-TGCTTCGAGCAGCCGACAGGCGAAGGCTG 7883 Query 1339 CACTGGAAAATGCCCGTGCTGAAATGTTATTGACAAAGACTGCAACTGATTACCTGATAG 1398 | | | || | || |||||| | || | || | || | || |||||||| | Sbjct 7882 CTATACAGAACACAGTGGCAGAAATGCTCCTGGCCAAAAGGGCTCCCGACTACCTGATTG 7823 Query 1399 GAAA---AGACCCTGTCCTGGATATAACTAAGAATAGGGTCTATCAAATTCTGAAAATGA 1455 |||| |||| | | || || || | || ||| |||| | || |||| || Sbjct 7822 GAAAGGAAGACTACGGC---GACATCACCCAAAACAGGATCTACAAGATACTGACTTGGA 7766 Query 1456 ATAACTACAACCCTCAATACATAGGAAGTATCCTGTGCGGCTGGGTGAAGA-GAGAGTTC 1514 | ||||| |||| | || | ||||| ||| | |||||| || ||| |||| ||| Sbjct 7765 ACAACTATGACCCCCCCTATGTGGGAAGCATCTTTGTCGGCTGC-TGCAGAAGAGACTTC 7707 Query 1515 AACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCA 1574 | ||| |||||| || | ||||| |||||||||| || | || ||||||||||| || Sbjct 7706 AGCAAGAGAAACACCGTGTGGCTGTACGGACCTGTGACGAAGGGAAAGACCAACATCGCT 7647 Query 1575 GAAGCTAT-----TGCCCAT--GCTGTACC-CTTCTATGGCTGTGTTAACTGGACTAATG 1626 |||||| | ||| | | | || || |||| ||||||| || |||||||| || | Sbjct 7646 GAAGCTGTCTCTTTGCTCTTTGGTGGTCCCGCTTC-ATGGCTGCGTCAACTGGACCAACG 7588 Query 1627 AGAACTTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAA 1686 |||||||||| | | ||| || || ||||||||| | ||||||||||||||||| |||| Sbjct 7587 AGAACTTTCCCTGCAGTGACTGCGTGGATAAAATGATTATTTGGTGGGAGGAGGGTAAAA 7528 Query 1687 TGACTAATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAG 1746 |||| ||| | || ||| |||| || || || |||| || ||| || |||| | Sbjct 7527 TGACATCCAAGATCGTCGAAGCTGCCAAGGCTCTTCTGGGTGGCTCTAAGGTGAGGGTGG 7468 Query 1747 ACCAGAAATGTAAAGGATCTGTTTGTATTGAACCTACTCCTGTAATTATTAC 1798 || |||||||| ||||| || | || || || || || || ||||| || Sbjct 7467 GTCAAAAATGTAAGGGATCCGTGTCAATAGATCCAACGCCAGTCATTATCAC 7416 >seq35619 Length=136974 Score = 118 bits (130), Expect = 3e-23 Identities = 225/326 (69%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 1360 AAATGTTATTGACAAAGACTGCAACTGATTACCTGATAGGAAAAGACCCTGTCC-TGGAT 1418 ||||| | |||| |||| ||| |||| ||||||| |||||||| || | |||| Sbjct 88381 AAATGGTTCTGACCAAGAAAGCATCTGACTACCTGACTGGAAAAGA---TGACTATGGAG 88437 Query 1419 ATA--ACTAAGAATAGGGTCTATCAAATTCTGAAAATGAATAACTACAACCCTCAATACA 1476 | | ||| | || | |||| |||| |||| ||||| || |||| |||| Sbjct 88438 ACATCACTCAAAACAAAATCTACAAAATACTGACTTTGAATGGATATGACCCAGCCTACA 88497 Query 1477 TAGGAAGTATCCTGTGCGGCTGGGTGAAGA-GAGAGTTCAACAAAAGAAACGCCATATGG 1535 | ||||| | | || ||| || ||| |||| ||||| || || ||| |||||| Sbjct 88498 TGGGAAGCACATTCGTTGGGTGG-TGCAGAAGAGACTTCAATAACAGGAACATGATATGG 88556 Query 1536 CTCTACGGACCTGCCACCACCGGGAAGACCAACATTGCAGAAGCTATTGCCCATGCTGTA 1595 || || |||||||||| ||| ||||| ||||||||||| | ||| | | ||| | Sbjct 88557 CTGTATGGACCTGCCAACACTGGGAAAACCAACATTGCTCAGGCTGTATCGACTGCCATG 88616 Query 1596 CCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTTCCTTTTAATGATTGTGTTGAT 1655 ||||| |||| ||||| || ||| | || || ||| ||| | ||| ||| | || Sbjct 88617 CCCTTTCATGGGTGTGTCAATTGGTCAAAGGACAACCTTCAGTATAACGATGTCATGGAC 88676 Query 1656 AAAATGCTGATTTGGTGGGAGGAGGG 1681 |||||| | ||||||||||| ||||| Sbjct 88677 AAAATGGTTATTTGGTGGGAAGAGGG 88702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16215844154730