Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq39689 178 4e-41 seq35619 82.4 2e-12 >seq39689 Length=9188 Score = 178 bits (196), Expect = 4e-41 Identities = 415/617 (67%), Gaps = 38/617 (6%) Strand=Plus/Minus Query 1142 CCTGACAAAGACGGCTCCGGACTACCTGGTGGGCA-GCAACCCGCCGGAGGACATTACCA 1200 |||| | || | |||||| ||||||||| | || | | || | ||| | |||| ||| Sbjct 7854 CCTGGCCAAAAGGGCTCCCGACTACCTGATTGGAAAGGAAGACTACGGCG-ACATCACCC 7796 Query 1201 AAAATCGGATCTACCAAATCCTGGAGCTGAACGGGTACGATCCGCAGTACGCGGCCTCCG 1260 |||| |||||||| | || ||| |||| || || || | || | || | Sbjct 7795 AAAACAGGATCTACAAGATACTGACTTGGAACAACTATGACCCCCCCTATGTGGGAAGCA 7736 Query 1261 TCTTCCTGGGCTGGGCGCAAAAGA-AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGG 1319 |||| | ||||| ||| |||| | ||| | ||||| |||||| | ||||| | || Sbjct 7735 TCTTTGTCGGCTGCT-GCAGAAGAGACTTCAGCAAGAGAAACACCGTGTGGCTGTACGGA 7677 Query 1320 CCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCATCGCC---CAC----GCCGTGCC 1372 || | |||| ||| || ||||||||||| ||||| || | | | | || || Sbjct 7676 CCTGTGACGAAGGGAAAGACCAACATCGCTGAAGCTGTCTCTTTGCTCTTTGGTGGTCCC 7617 Query 1373 -CTTCTACGGCTGCGTAAACTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACA 1431 |||| | |||||||| ||||||||||| ||||||||||||| || || ||||| || | Sbjct 7616 GCTTC-ATGGCTGCGTCAACTGGACCAACGAGAACTTTCCCTGCAGTGACTGCGTGGATA 7558 Query 1432 AGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGAGC-GCCAAG 1490 | ||| | || |||||||||||||| || ||||| ||||| |||| || ||| |||||| Sbjct 7557 AAATGATTATTTGGTGGGAGGAGGGTAAAATGACATCCAAGATCGTCGA-AGCTGCCAAG 7499 Query 1491 GCCATTCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATC 1550 || ||||||| || |||||| | |||| ||||| || ||| ||| | || Sbjct 7498 GCTCTTCTGGGTGGCTCTAAGGTGAGGGTGGGTCAAAAATGTAAGGGATCCGTGTCAATA 7439 Query 1551 GAACCCACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAAC 1610 || || || || || || |||| |||||| | ||||||| | ||| || || ||| Sbjct 7438 GATCCAACGCCAGTCATTATCACATCCAACGCAGACATGTGTTCTGTGGCAGATGGTAAC 7379 Query 1611 AGCACCACCTTCGAGCATCAGCAGCCGCTGCAGGACCGGATGTTTGAATTTGAACTTACC 1670 ||||| | |||||| | | | ||||| ||| || ||| || Sbjct 7378 TTGACCACGCTGGAGCATGAAAAAGCACTGCA---------GTTCAAAATTGCAC----- 7333 Query 1671 CGCCGTTTGGACCA--TGACTTTGGGAAGGTCACCAAACAGGAAGTAAAGGACTTTTTCC 1728 ||| ||| ||| ||||||||| |||| | || || ||| ||||||||| Sbjct 7332 -------TGGTCCATGTGATTTTGGGAAGATCACAAGACGTGAGGTACTTGACTTTTTCA 7280 Query 1729 GGTGGGCTTCCGATCAC 1745 ||||||| ||| ||| Sbjct 7279 AGTGGGCTGACGAACAC 7263 >seq35619 Length=136974 Score = 82.4 bits (90), Expect = 2e-12 Identities = 133/188 (71%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 1274 GGCGCAAAAGA-AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGG 1332 || ||| |||| | ||| || ||||||| || ||||| | ||| || |||| || | Sbjct 88519 GGTGCAGAAGAGACTTCAATAACAGGAACATGATATGGCTGTATGGACCTGCCAACACTG 88578 Query 1333 GTAAAACCAACATCGCGGAAGC--CATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAA 1390 | ||||||||||| || | || |||| | ||| ||||||| | || || || || Sbjct 88579 GGAAAACCAACATTGCTCAGGCTGTATCGAC--TGCCATGCCCTTTCATGGGTGTGTCAA 88636 Query 1391 CTGGACCAATGAGAACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGA 1450 ||| | || || ||| ||| | |||||| | | ||||| ||||| || |||||||| Sbjct 88637 TTGGTCAAAGGACAACCTTCAGTATAACGATGTCATGGACAAAATGGTTATTTGGTGGGA 88696 Query 1451 GGAGGGCA 1458 ||||||| Sbjct 88697 AGAGGGCA 88704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15000695115330