Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq39689 168 2e-38 seq35619 87.8 5e-14 >seq39689 Length=9188 Score = 168 bits (186), Expect = 2e-38 Identities = 268/377 (71%), Gaps = 12/377 (3%) Strand=Plus/Minus Query 1331 GCAAAAGA-AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTA 1389 ||| |||| | ||| | ||||| |||||| | ||||| | || || | |||| ||| | Sbjct 7720 GCAGAAGAGACTTCAGCAAGAGAAACACCGTGTGGCTGTACGGACCTGTGACGAAGGGAA 7661 Query 1390 AAACCAACATCGCGGAAGCCATCGCC---CAC----GCCGTGCC-CTTCTACGGCTGCGT 1441 | ||||||||||| ||||| || | | | | || || |||| | |||||||| Sbjct 7660 AGACCAACATCGCTGAAGCTGTCTCTTTGCTCTTTGGTGGTCCCGCTTC-ATGGCTGCGT 7602 Query 1442 GAACTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTG 1501 ||||||||||| ||||||||||| | || || ||||| || || ||| | || ||||| Sbjct 7601 CAACTGGACCAACGAGAACTTTCCCTGCAGTGACTGCGTGGATAAAATGATTATTTGGTG 7542 Query 1502 GGAGGAGGGCAAGATGACGGCCAAGGTCGTAGAGAGC-GCCAAGGCCATCCTGGGCGGAA 1560 ||||||||| || ||||| ||||| |||| || ||| |||||||| | ||||| || Sbjct 7541 GGAGGAGGGTAAAATGACATCCAAGATCGTCGA-AGCTGCCAAGGCTCTTCTGGGTGGCT 7483 Query 1561 GCAAGGTGCGCGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCAACTCCCGTGA 1620 |||||| | |||| ||||| || ||| ||| | || || ||||| || || | Sbjct 7482 CTAAGGTGAGGGTGGGTCAAAAATGTAAGGGATCCGTGTCAATAGATCCAACGCCAGTCA 7423 Query 1621 TCGTCACCTCCAACACCAACATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGC 1680 | |||| |||||| | ||||||| | || || || |||| |||||| | |||| Sbjct 7422 TTATCACATCCAACGCAGACATGTGTTCTGTGGCAGATGGTAACTTGACCACGCTGGAGC 7363 Query 1681 ACCAACAACCACTCCAG 1697 | || || |||| ||| Sbjct 7362 ATGAAAAAGCACTGCAG 7346 >seq35619 Length=136974 Score = 87.8 bits (96), Expect = 5e-14 Identities = 134/188 (71%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 1328 GGCGCAAAAGA-AGTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGG 1386 || ||| |||| | ||| || ||||||| || ||||| | ||| || |||| || | Sbjct 88519 GGTGCAGAAGAGACTTCAATAACAGGAACATGATATGGCTGTATGGACCTGCCAACACTG 88578 Query 1387 GTAAAACCAACATCGCGGAAGC--CATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAA 1444 | ||||||||||| || | || |||| | ||| ||||||| | || || || || Sbjct 88579 GGAAAACCAACATTGCTCAGGCTGTATCGAC--TGCCATGCCCTTTCATGGGTGTGTCAA 88636 Query 1445 CTGGACCAATGAGAACTTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGA 1504 ||| | || || ||| ||| || |||||| | | ||||| ||||| || |||||||| Sbjct 88637 TTGGTCAAAGGACAACCTTCAGTATAACGATGTCATGGACAAAATGGTTATTTGGTGGGA 88696 Query 1505 GGAGGGCA 1512 ||||||| Sbjct 88697 AGAGGGCA 88704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15131803301160