Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq39689 174 5e-40 >seq39689 Length=9188 Score = 174 bits (192), Expect = 5e-40 Identities = 268/376 (71%), Gaps = 11/376 (3%) Strand=Plus/Minus Query 1278 TCTTTCTCGGCTGGGCCCAGAAAAGG-TTCGGGAAGCGCAACACCATCTGGCTGTTTGGG 1336 ||||| ||||||| | |||| || ||| | ||| | |||||| | ||||||| || Sbjct 7735 TCTTTGTCGGCTGCTGC-AGAAGAGACTTCAGCAAGAGAAACACCGTGTGGCTGTACGGA 7677 Query 1337 CCGGCCACCACGGGCAAGACCAACATCGCGGAAGCCATCGCC---CAC----GCCGTGCC 1389 || | || | ||| |||||||||||||| ||||| || | | | | || || Sbjct 7676 CCTGTGACGAAGGGAAAGACCAACATCGCTGAAGCTGTCTCTTTGCTCTTTGGTGGTCCC 7617 Query 1390 -CTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGATTGCGTCGACA 1448 |||| | |||||||||||||||||||| ||||||||||||| || ||| ||||| || | Sbjct 7616 GCTTC-ATGGCTGCGTCAACTGGACCAACGAGAACTTTCCCTGCAGTGACTGCGTGGATA 7558 Query 1449 AGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGG 1508 | ||| | || |||||||||||||| || ||||| ||||| |||| || | ||||||| Sbjct 7557 AAATGATTATTTGGTGGGAGGAGGGTAAAATGACATCCAAGATCGTCGAAGCTGCCAAGG 7498 Query 1509 CCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCG 1568 | |||| || ||| |||||| | |||| ||||| || ||| |||| || | Sbjct 7497 CTCTTCTGGGTGGCTCTAAGGTGAGGGTGGGTCAAAAATGTAAGGGATCCGTGTCAATAG 7438 Query 1569 ACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAACA 1628 | || || || || || |||| |||||| | ||||||| | ||| || || ||| Sbjct 7437 ATCCAACGCCAGTCATTATCACATCCAACGCAGACATGTGTTCTGTGGCAGATGGTAACT 7378 Query 1629 GCACCACCTTCGAGCA 1644 ||||| | ||||| Sbjct 7377 TGACCACGCTGGAGCA 7362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14975113030290