Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq39689 324 4e-85 seq35619 114 4e-22 >seq39689 Length=9188 Score = 324 bits (358), Expect = 4e-85 Identities = 474/664 (71%), Gaps = 31/664 (5%) Strand=Plus/Minus Query 907 TACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCGAGAAGGAATGGCTG 966 ||||||| ||||| || ||| | | |||||||| ||||| |||||||||||||||| Sbjct 8009 TACATGGCCCTCGTCGACTGGTTAATCGAGAAGGGCATCACGTCCGAGAAGGAATGGCTT 7950 Query 967 CTGGAAAACAGAGAAAGCTTTCGGAGCTTTCAG------GCCTCGAGCAACTCGGCGCGT 1020 ||||| ||| | |||||| ||||||||| || ||||||| | || Sbjct 7949 TTGGAAGACAAACGTTCCTTTCGAAGCTTTCAGAGCAATGCTTCGAGCAGC------CGA 7896 Query 1021 CAGATCAAGACGGCCCTGCAAGGCGCCATTCAGGAGATGCTTCTGACCAAGACGGCGGAG 1080 ||| ||| | || | || | | | || ||||| ||| |||| | ||| Sbjct 7895 CAGGCGAAGGCTGCTATACAGAACACAGTGGCAGAAATGCTCCTGGCCAAAAGGGCTCCC 7836 Query 1081 GACTACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATCCGTCAGAACCGCATCTAC 1140 |||||||| | |||||||| | || ||| ||||||| || ||| | |||||| Sbjct 7835 GACTACCTGATTGGAAAGGAA---GACT---ACGGCGACATCACCCAAAACAGGATCTAC 7782 Query 1141 AAGATTCTGGAACT--GAACCACTACGACCCAGCGTACGTGGGGAGTATTTTGGTCGGGT 1198 ||||| ||| ||| |||| |||| ||||| | || ||||| || || || ||||| | Sbjct 7781 AAGATACTG--ACTTGGAACAACTATGACCCCCCCTATGTGGGAAGCATCTTTGTCGGCT 7724 Query 1199 GGTGCCAGAAGAAA-TGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACATGCGACCACC 1257 | ||| |||||| | | ||||| ||||||| ||||||||| ||||| || ||| | Sbjct 7723 GCTGC-AGAAGAGACTTCAGCAAGAGAAACACCGTGTGGCTGTACGGACCTGTGACGAAG 7665 Query 1258 GGCAAGACCAACATCGCGGAGGCTAT-----TGCCCAT--GCTGTGCCGTTCTATGGATG 1310 || |||||||||||||| || ||| | ||| | | | || ||| | |||| || Sbjct 7664 GGAAAGACCAACATCGCTGAAGCTGTCTCTTTGCTCTTTGGTGGTCCCGCTTCATGGCTG 7605 Query 1311 CGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATCTG 1370 ||| ||||||||||||||||||||||| | || |||||||| || ||||||||||| || Sbjct 7604 CGTCAACTGGACCAACGAGAACTTTCCCTGCAGTGACTGCGTGGATAAAATGATTATTTG 7545 Query 1371 GTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGAGG 1430 |||||||||||| |||||||| |||| | || ||| | |||||||| ||||||| || Sbjct 7544 GTGGGAGGAGGGTAAAATGACATCCAAGATCGTCGAAGCTGCCAAGGCTCTTCTGGGTGG 7485 Query 1431 ATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCGGT 1490 ||| |||||| |||| |||||||| || | || || | || || || ||||| || Sbjct 7484 CTCTAAGGTGAGGGTGGGTCAAAAATGTAAGGGATCCGTGTCAATAGATCCAACGCCAGT 7425 Query 1491 CATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTCGA 1550 |||||| || ||| | ||||||||| ||| || || ||| ||||||| | || Sbjct 7424 CATTATCACATCCAACGCAGACATGTGTTCTGTGGCAGATGGTAACTTGACCACGCTGGA 7365 Query 1551 GCAT 1554 |||| Sbjct 7364 GCAT 7361 >seq35619 Length=136974 Score = 114 bits (126), Expect = 4e-22 Identities = 225/329 (68%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 1057 ATGCTTCTGACCAAGACGGCGGAGGACTACCTCGTCGGAAAGGATCCCGTCTCGGACGAC 1116 ||| |||||||||||| || |||||||| ||||| ||| | || | | Sbjct 88383 ATGGTTCTGACCAAGAAAGCATCTGACTACCTGACTGGAAAAGAT---GACT---ATGGA 88436 Query 1117 GACATCCGTCAGAACCGCATCTACAAGATTCTGGAACTGAACCACTACGACCCAGCGTAC 1176 |||||| ||| ||| |||||||| || ||| |||| || |||||||| ||| Sbjct 88437 GACATCACTCAAAACAAAATCTACAAAATACTGACTTTGAATGGATATGACCCAGCCTAC 88496 Query 1177 GTGGGGAGTATTTTGGTCGGGTGGTGCCAGAAGA-AATGGGGCAAGCGAAACACGCTGTG 1235 |||| || | || || |||||||| ||||||| | | || | |||| | | || Sbjct 88497 ATGGGAAGCACATTCGTTGGGTGGTG-CAGAAGAGACTTCAATAACAGGAACATGATATG 88555 Query 1236 GCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGT 1295 ||||| |||| ||| | ||| || || |||||||| || ||||| | | ||| | Sbjct 88556 GCTGTATGGACCTGCCAACACTGGGAAAACCAACATTGCTCAGGCTGTATCGACTGCCAT 88615 Query 1296 GCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGA 1355 ||| || |||| || || || ||| | || || ||| ||| || ||||| | | || Sbjct 88616 GCCCTTTCATGGGTGTGTCAATTGGTCAAAGGACAACCTTCAGTATAACGATGTCATGGA 88675 Query 1356 AAAAATGATTATCTGGTGGGAGGAGGGCA 1384 |||||| |||| |||||||| ||||||| Sbjct 88676 CAAAATGGTTATTTGGTGGGAAGAGGGCA 88704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14898366775170