Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq39689 154 4e-34 >seq39689 Length=9188 Score = 154 bits (170), Expect = 4e-34 Identities = 245/354 (69%), Gaps = 13/354 (4%) Strand=Plus/Minus Query 1306 CGGCTGGTGCACTCGCGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGAC 1365 |||||| |||| | | ||| | ||||| |||||||| |||||||| ||||| | ||| Sbjct 7728 CGGCTGCTGCAGAAGAGACTTCAGCAAGAGAAACACCGTGTGGCTGTACGGACCTGTGAC 7669 Query 1366 CACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACC-------GTGCCCTTTTATG 1418 | ||||||||||||||||| ||||| ||||| | || || || ||| Sbjct 7668 GAAGGGAAAGACCAACATCGCTGAAGCTGTCTCTTTGCTCTTTGGTGGTCCCGCTTCATG 7609 Query 1419 GCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGA 1478 |||| || |||||||| || |||||||| || |||||| | | Sbjct 7608 GCTGCGTCAACTGGACCAACGAGAACTTTCCCTGCAGTGACTGCGTGGATAAAATGATTA 7549 Query 1479 TCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgg 1538 | |||||||||||||| || ||||| |||| | || ||| | |||||||| | ||| Sbjct 7548 TTTGGTGGGAGGAGGGTAAAATGACATCCAAGATCGTCGAAGCTGCCAAGGCTCTTCTGG 7489 Query 1539 gggggTCTAGAGTACGAGTGGATCAAAAATGTAA---ATCCTCTGTACAAGTAGACTCTA 1595 | || |||| || | |||| |||||||||||| |||| ||| ||| |||| | | Sbjct 7488 GTGGCTCTAAGGTGAGGGTGGGTCAAAAATGTAAGGGATCC-GTGT-CAA-TAGATCCAA 7432 Query 1596 CCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACT 1649 | || || |||||||| ||||| | |||||||| |||| ||||| |||| Sbjct 7431 CGCCAGTCATTATCACATCCAACGCAGACATGTGTTCTGTGGCAGATGGTAACT 7378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14895169014540